TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.4
         (161 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9669 similar to UP|Q9LQA7 (Q9LQA7) F4N2.10, partial (16%)            27  1.7
AV407566                                                               27  1.7
TC14962 similar to GB|AAP37696.1|30725348|BT008337 At5g15120 {Ar...    26  2.9
AV780534                                                               26  2.9
TC11306 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation fact...    26  3.8
BP071202                                                               25  4.9
AW720129                                                               25  6.4

>TC9669 similar to UP|Q9LQA7 (Q9LQA7) F4N2.10, partial (16%)
          Length = 472

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 14/46 (30%), Positives = 23/46 (49%)
 Frame = -1

Query: 31  EELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTAR 76
           E++TG+I +    N   S     + +L LL      +EEH+E+  R
Sbjct: 151 EDITGMITRF*ESNTTRSASMVRETWLLLLCIVSSFWEEHQEIEQR 14


>AV407566 
          Length = 321

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 14/46 (30%), Positives = 23/46 (49%)
 Frame = -3

Query: 31  EELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTAR 76
           E++TG+I +    N   S     + +L LL      +EEH+E+  R
Sbjct: 151 EDITGMITRF*ESNTTRSASMVRETWLLLLCIVSSFWEEHQEIEQR 14


>TC14962 similar to GB|AAP37696.1|30725348|BT008337 At5g15120 {Arabidopsis
           thaliana;}, partial (36%)
          Length = 632

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
 Frame = -3

Query: 9   QIRSLAFDQDLFWE--LHSSLSLAEELTGLINQLL--SRNIIASVKTPLQEFLSLLREAV 64
           ++R + F  D+FW   + +SL     L G        S+N++ASVK  L     LL   V
Sbjct: 414 EMRHIRFQADIFWSYCI*NSLKSLNVLRGRDKPCSPRSKNLLASVK*LLNRRHLLLTPPV 235

Query: 65  PL 66
           PL
Sbjct: 234 PL 229


>AV780534 
          Length = 536

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 23  LHSSLSL-AEELTGLINQLLSRNIIASVKTPLQEFLSL 59
           LHS +SL AE+   +I  LLS   +A +   LQ  LSL
Sbjct: 224 LHSEVSLFAEDGVSVITVLLSTRCLADLLRKLQPLLSL 111


>TC11306 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation factor 4,
           eIF4-like protein, partial (6%)
          Length = 550

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
 Frame = -3

Query: 27  LSLAEELTGLINQLL-------SRNI-IASVKTPLQEFLSLLREAVPLYEEHRELTARVF 78
           L LA   + L + LL        RNI    +  P+Q FLS+ + ++P++  +  L+  +F
Sbjct: 527 LCLARTRSSLFSSLLFSLRRRRERNISFQYLAPPIQPFLSIYQSSIPIFSIY--LSINLF 354

Query: 79  FAEHQID 85
           F    ID
Sbjct: 353 FFFFSID 333


>BP071202 
          Length = 414

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 24  HSSLSLAEELTGLINQLLSRNIIASVKTPLQEFL 57
           HS++S  + L      + S  + A  KTP+ EFL
Sbjct: 202 HSNISCKQNLCSYSKHMDSNFMTAKKKTPINEFL 303


>AW720129 
          Length = 555

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 9   QIRSLAFDQDLFWELHSSLSLAEELTGLINQLLSRNII 46
           Q+R LAF +  +W+LH  +     LT    +L  +N+I
Sbjct: 241 QLRWLAFSESDWWKLHMRIM----LTRTCKKLQEKNVI 342


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.132    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,004,104
Number of Sequences: 28460
Number of extensions: 19783
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of query: 161
length of database: 4,897,600
effective HSP length: 83
effective length of query: 78
effective length of database: 2,535,420
effective search space: 197762760
effective search space used: 197762760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)