TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.17
         (369 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP046665                                                               75  2e-14
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    64  3e-11
BP085968                                                               54  3e-08
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    44  6e-05
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    41  3e-04
TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    41  3e-04
BP063650                                                               30  0.11
TC9044 similar to GB|AAR21619.1|38490051|AY457043 TATA-binding p...    27  5.4
BP039904                                                               27  7.1
BP065488                                                               26  9.2
TC10728                                                                26  9.2

>BP046665 
          Length = 524

 Score = 75.1 bits (183), Expect = 2e-14
 Identities = 44/59 (74%), Positives = 49/59 (82%)
 Frame = -2

Query: 310 ILHAQEYQIKKLY*SKVLR*CY*EI*IKQPVYALERG**WLILEQML*RPL**QEPTLE 368
           ILHA EYQI K +* K LR*C+*EI IKQ V+A+ER **WLILEQM *+PL** EPTLE
Sbjct: 523 ILHASEYQIIK*H*RKELR*CF*EIYIKQSVFAMERD**WLILEQM**KPL**LEPTLE 347


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 64.3 bits (155), Expect = 3e-11
 Identities = 30/46 (65%), Positives = 38/46 (82%)
 Frame = +3

Query: 260 LHWNVLRKLIILCLIYYQIIQQST*AQITLANLTRTLNYNQSGLLQ 305
           LHWN+LR+L+ LCLIY+Q I  ST*AQI LAN+ +T NY+ +GLLQ
Sbjct: 459 LHWNLLRRLMNLCLIYFQAIPPST*AQIPLANMMKTPNYSHNGLLQ 596


>BP085968 
          Length = 341

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 39/103 (37%), Positives = 48/103 (45%), Gaps = 5/103 (4%)
 Frame = +3

Query: 1   FTFCMDMEELAKILSGIHYLNVASSG-----TFSAAIRSMGMIVLNVASSGIASLLLPGG 55
           F F MD+E   K L GIH L V         T+   +  +G  +                
Sbjct: 75  FIFYMDLEVREKHLCGIHGLQV*DHKDSWF*TWHQVVLLLGCCLEE-------------- 212

Query: 56  RTAHSRFCIPLQTDKTATCNIKQDSLRENLLICAKFIIWDEAP 98
           RTAHSRF I +  +  +TCNIKQ S +  LL  A  IIWDEAP
Sbjct: 213 RTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIWDEAP 341


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 23/29 (79%), Positives = 25/29 (85%)
 Frame = +2

Query: 325 KVLR*CY*EI*IKQPVYALERG**WLILE 353
           KVL *C+*EI* K PVYA+ER **WLILE
Sbjct: 47  KVL**CF*EI*FKHPVYAMERD**WLILE 133


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 341 YALERG**WLILEQML*RPL**QEPTLE 368
           YA+ER **WLILE M *+PL** EPTLE
Sbjct: 170 YAMERD**WLILEHMS*KPL**LEPTLE 253


>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 341 YALERG**WLILEQML*RPL**QEPTLE 368
           YA+ER **WLILE M *+PL** EPTLE
Sbjct: 62  YAMERD**WLILEHMS*KPL**LEPTLE 145


>BP063650 
          Length = 497

 Score = 30.4 bits (67), Expect(2) = 0.11
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 141 QILPVIPKGGRQDIVSATVNSSDLWKYCKVL 171
           + L V+ KG  QDI+ A VN+S L  +C+VL
Sbjct: 58  KFLTVVYKGRMQDIIHAIVNASYL*DHCQVL 150



 Score = 20.8 bits (42), Expect(2) = 0.11
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 133 VVLGGDFRQI 142
           VVL GDFRQI
Sbjct: 33  VVLQGDFRQI 62


>TC9044 similar to GB|AAR21619.1|38490051|AY457043 TATA-binding protein
           associated factor 4 {Arabidopsis thaliana;} , partial
           (5%)
          Length = 580

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = +2

Query: 232 LDLIDLHIPIWCRT*RLKSFWKDDAYCVLH 261
           L+ +   I I C + +LKSF K D  CV+H
Sbjct: 362 LNFVVEFIIILCLSTKLKSFLKSDTNCVVH 451


>BP039904 
          Length = 544

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = -2

Query: 169 KVLKLTKNMRLCTTGSPEL 187
           K+L L +N+RLC TGS  L
Sbjct: 384 KILDLLENLRLCVTGSSVL 328


>BP065488 
          Length = 439

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 14/17 (82%), Positives = 15/17 (87%)
 Frame = -1

Query: 350 LILEQML*RPL**QEPT 366
           LILEQM *+PL** EPT
Sbjct: 433 LILEQMS*KPL**LEPT 383


>TC10728 
          Length = 500

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = -3

Query: 1   FTFCMDMEELAKILSGIHYLNVASSGTFSAAI 32
           F +C D+   +K +S +H LNV     FS  I
Sbjct: 174 FCYCCDVLH*SKSVSHVHNLNVPEVACFSVTI 79


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.342    0.152    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,067,149
Number of Sequences: 28460
Number of extensions: 83031
Number of successful extensions: 579
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of query: 369
length of database: 4,897,600
effective HSP length: 92
effective length of query: 277
effective length of database: 2,279,280
effective search space: 631360560
effective search space used: 631360560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 56 (26.2 bits)