TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0024.11
         (148 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP033552                                                               28  0.65
AV406521                                                               26  3.2
TC19059 weakly similar to PIR|E86340|E86340 protein F2D10.32 [im...    25  4.2
TC11688 weakly similar to UP|Q9M269 (Q9M269) Serine/threonine-pr...    25  5.5
AW428659                                                               25  5.5
BP077965                                                               25  7.2
TC18325                                                                24  9.4

>BP033552 
          Length = 505

 Score = 28.1 bits (61), Expect = 0.65
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +2

Query: 20  FSTIKFRNHVHQGILREILASEFQNSKQIS 49
           F   +F   V   ILR +LA+EFQNSKQ S
Sbjct: 155 FLRFRFFLRVPLRILR*VLATEFQNSKQDS 244


>AV406521 
          Length = 267

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 15  KSDYDFSTIKFRNHVHQGILR---EILASEFQNSKQISKIWEKRY 56
           K  Y  S  +F N  H   +R   E +  EF+NS+ +  +W+  Y
Sbjct: 126 KGYYRRSEDEFSNSSHTFCMRHLSESIGKEFKNSRLVHLLWKAAY 260


>TC19059 weakly similar to PIR|E86340|E86340 protein F2D10.32 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (26%)
          Length = 438

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 98  KRIFKFSKDSKSHLKRSSKSEIAYS 122
           +R FKF  +SKS ++RSS S   ++
Sbjct: 98  RRAFKFEFESKSQVQRSSYSSSTFT 172


>TC11688 weakly similar to UP|Q9M269 (Q9M269) Serine/threonine-protein
           kinase-like protein, partial (6%)
          Length = 445

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = +1

Query: 91  TLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSC 133
           +L+    KRI ++ +  + HLK SS+S    +     K  NSC
Sbjct: 61  SLLAADKKRILQYIRHLQFHLKSSSESSSKEADALAAK*INSC 189


>AW428659 
          Length = 281

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 105 KDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRES 143
           KDS SH K +S+SE    G+    A  + ++   S+ +S
Sbjct: 101 KDSSSHFKNASQSENQMVGNTGAGAGPTLYSSLGSSTDS 217


>BP077965 
          Length = 275

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 42  FQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEF 87
           F    Q  +IW  +Y +  KR+ +     V+ L   + +  +SPEF
Sbjct: 135 FLKKDQRKRIWYLKY*QFIKRYIKKDIFQVSSL*PIKGFCGHSPEF 272


>TC18325 
          Length = 513

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = -2

Query: 58  KSQKRWFRSKEISVARLPESEYYRAYSPEFRNETLVEG 95
           KS+ +   +    +  L ES YY+  +    N+TLV G
Sbjct: 284 KSKTKTVSALSTRICYLIESHYYQLVATRTGNQTLVSG 171


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,215,451
Number of Sequences: 28460
Number of extensions: 24113
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of query: 148
length of database: 4,897,600
effective HSP length: 82
effective length of query: 66
effective length of database: 2,563,880
effective search space: 169216080
effective search space used: 169216080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)