BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.9
(388 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780705 99 1e-21
TC12829 67 3e-17
AV767121 82 1e-16
CB826728 65 4e-13
BP060613 61 3e-10
AV780221 52 2e-07
BP085058 44 4e-05
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 36 0.010
CN825238 34 0.047
AV411435 30 0.89
AV780250 29 1.2
AV776569 28 2.0
TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like p... 28 2.0
BP065085 28 2.0
TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloro... 28 2.6
TC9957 similar to UP|Q9FXS1 (Q9FXS1) WRKY transcription factor N... 28 3.4
TC15874 27 5.8
AV414192 27 7.6
TC17544 similar to PIR|T04919|T04919 DNA-binding protein homolog... 27 7.6
>AV780705
Length = 524
Score = 99.0 bits (245), Expect = 1e-21
Identities = 56/152 (36%), Positives = 90/152 (58%), Gaps = 4/152 (2%)
Frame = -2
Query: 69 YLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFI 128
YLGLP I G++K+ +++E++ ++L+GWKE L++AG+E+LIK+I QAIPSY M+
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305
Query: 129 LPDSICADIDRMIACFFW----GGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEAL 184
P + C + ++A F+W G V G T+ +K GG+GFR R A
Sbjct: 304 FPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*P---LSKEKGGVGFRDLRTQNLAF 134
Query: 185 VAKN**RIYMFPESLMGRVFKVVYSPSSSILM 216
+A+ R+ PE+L RV K +Y P+ ++ +
Sbjct: 133 LARQAWRVLTNPEALWVRVMKSLYFPTPALCL 38
>TC12829
Length = 448
Score = 67.0 bits (162), Expect(2) = 3e-17
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +3
Query: 100 EKSLSRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFF 145
EK L RAGRE+LIKS+ +AIP+YIMSCF LPDSIC+ I+ M+ F+
Sbjct: 252 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 389
Score = 37.7 bits (86), Expect(2) = 3e-17
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 141 IACFFWGGDVTRRGLHWTRWANLC 164
+ F W GDV+RR +HW W LC
Sbjct: 376 LVSFIWSGDVSRRSIHWLGWKKLC 447
>AV767121
Length = 525
Score = 82.4 bits (202), Expect = 1e-16
Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Frame = +2
Query: 95 LKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRG 154
L WK+K++S GR LI+S+ A+P + +S F LP + R++ F WGG
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 155 LHWTRWANLCKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVV---YSPS 211
+ +W ++CK K GGLG + F +AL+ K R P+SL RV + YS
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSCG 361
Query: 212 SSILMAKKGYITWSSILKAGGKIEGG--GGGLRWRVGDGFQINLLQDKWLPDG 262
SS W+ IL + G GL+ VG+G Q + WL G
Sbjct: 362 SS---------WWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSG 493
>CB826728
Length = 509
Score = 65.1 bits (157), Expect(2) = 4e-13
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +3
Query: 252 NLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNGRWNLELLEEVFSSSPMQKILAIPL 311
++L D WLP+ + LVY + +L+L+KV+DL++NGRWN L+ VFS S LA+ L
Sbjct: 3 DILHDAWLPNSAPLVYCEDLFVDLQLKKVADLIENGRWNENLVSMVFSPSTTAVFLAVSL 182
Query: 312 SNQGNTDALY 321
Q D L+
Sbjct: 183 PLQSYEDCLF 212
Score = 25.8 bits (55), Expect(2) = 4e-13
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 321 YWYDTFNGVYVCKSGYKFIR 340
+W + +G Y KSGY+FIR
Sbjct: 211 FWPGSSDGWYSSKSGYEFIR 270
>BP060613
Length = 378
Score = 61.2 bits (147), Expect = 3e-10
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = +1
Query: 143 CFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGR 202
C W RG+HW +W L + K +GGLGF+ F +AL+AK RI P++L +
Sbjct: 37 CQVWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQ 216
Query: 203 VFKVVYSPSSSILMAKK---GYITWSSILKAGGKIEGGGGGLRWRVGDG 248
+ K +Y P L K WSS+L + G +W++G G
Sbjct: 217 ILKALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQG---QWQLGSG 354
>AV780221
Length = 461
Score = 51.6 bits (122), Expect = 2e-07
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Frame = +3
Query: 111 LIKSIAQAIPSYIMSCFILPDS-ICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRD 169
LI+S+ A+P + + F LP +++ FF + + W +W+ +C+ K +
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 170 GGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSSILK 229
GGLG + F +AL+ K R+ + L +V + Y + + +W + L
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKNA-----IPQSASSWWNDLH 353
Query: 230 AGGKIEGGGG----GLRWRVGDGFQINLLQDKWL 259
+ +GGGG GL R+G+G ++ + WL
Sbjct: 354 STCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>BP085058
Length = 452
Score = 44.3 bits (103), Expect = 4e-05
Identities = 33/126 (26%), Positives = 49/126 (38%)
Frame = +2
Query: 49 NCFHELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGR 108
N + + + + KY+ P G + F F +R+ RL K L++ R
Sbjct: 77 NLRDRMVSITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPAR 256
Query: 109 EILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKR 168
L K + AI Y+M LP SIC I ++ F W G+ W + K
Sbjct: 257 LTLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVW---ENVNGIPLVAWETIQSRKS 427
Query: 169 DGGLGF 174
GL F
Sbjct: 428 MVGLIF 445
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 36.2 bits (82), Expect = 0.010
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = -3
Query: 48 ENCFHELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAG 107
E +++T +L KE K + LG+P + K K + +R +L+ W +SLS AG
Sbjct: 220 ETTKNQITNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAG 41
Query: 108 REILIKSI 115
R LI SI
Sbjct: 40 RLQLINSI 17
>CN825238
Length = 692
Score = 33.9 bits (76), Expect = 0.047
Identities = 14/49 (28%), Positives = 27/49 (54%)
Frame = +3
Query: 288 RWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
RWN++L++++F I +IPL + ++ W + NG + +S Y
Sbjct: 318 RWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAY 464
>AV411435
Length = 426
Score = 29.6 bits (65), Expect = 0.89
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 306 ILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIR 340
I+ P S G+ D L+W +G Y KSGY+ ++
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVK 107
>AV780250
Length = 494
Score = 29.3 bits (64), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +3
Query: 318 DALYWYDTFNGVYVCKSGYKFIRDMML 344
D L W T NG Y KSGY +R+ ++
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVV 254
>AV776569
Length = 633
Score = 28.5 bits (62), Expect = 2.0
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 249 FQINLLQDKWLPDGSSLVY-MHEAIAELRLEKVSDLLDN 286
FQ LLQD+ LP G + MH+A + L K+ DLL +
Sbjct: 194 FQQKLLQDRALPHGLQM*G*MHQASTDTTLLKLQDLLSS 78
>TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like protein
(AT5g16880/F2K13_30), partial (77%)
Length = 1574
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Frame = +3
Query: 267 YMHEA-IAELRLEKVSDLLDNGRWNLELLEEVFSSSPMQKIL 307
+ HE + E+ + D R ++ELL V SSSP Q +L
Sbjct: 756 FQHEVPVLSFTPEQTKEAFDVARNSIELLSTVLSSSPQQDVL 881
>BP065085
Length = 454
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 289 WNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
W+ ++ +F + +ILAI L D +W N VY KS Y
Sbjct: 448 WDGXVISHIFCPATTGQILAILLPIPRLADEFHWPHNSNSVYSSKSRY 305
>TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
nucleoid DNA binding protein-like {Arabidopsis
thaliana;} , partial (58%)
Length = 2067
Score = 28.1 bits (61), Expect = 2.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 226 SILKAGGKIEGGGGGLRWRVGDG 248
S+++ GG +E GGGGLR V G
Sbjct: 186 SLVEGGGDVEDGGGGLRRTVNWG 118
>TC9957 similar to UP|Q9FXS1 (Q9FXS1) WRKY transcription factor Nt-SubD48,
partial (16%)
Length = 653
Score = 27.7 bits (60), Expect = 3.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 224 WSSILKAGGKIEGGGGGLRWRVG 246
W + G GGGGG RWRVG
Sbjct: 518 WLLLQFRGVLCGGGGGGWRWRVG 450
>TC15874
Length = 546
Score = 26.9 bits (58), Expect = 5.8
Identities = 17/63 (26%), Positives = 32/63 (49%)
Frame = -1
Query: 71 GLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFILP 130
G PT S T+I NF+++ +W K K+ R +L+ S + +++ S +LP
Sbjct: 417 GTPT--SSSYTKISNFLRKMVWA*NP*DKPKNFPRGVERLLLNS---GMDAWVPSLILLP 253
Query: 131 DSI 133
+ +
Sbjct: 252 EPL 244
>AV414192
Length = 160
Score = 26.6 bits (57), Expect = 7.6
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 1/39 (2%)
Frame = +3
Query: 317 TDALYWYDTFNGVYVCKSGYKF-IRDMMLREEHRPLPCR 354
TD W +G+Y +SGY++ ++ REE R L R
Sbjct: 33 TDCQVWRGDMSGLYSTRSGYQWLLKGTAGREERRVLRLR 149
>TC17544 similar to PIR|T04919|T04919 DNA-binding protein homolog T9A21.10 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(14%)
Length = 578
Score = 26.6 bits (57), Expect = 7.6
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 7/53 (13%)
Frame = +1
Query: 195 FPESLMGRVFKVVYSP--SSSILMAKKGYITWSSILKAG-----GKIEGGGGG 240
F E L GRV YSP ++S ++ +SS+ + G + GGGGG
Sbjct: 175 FTECLQGRVMDYNYSPFGNTSFGLSPSSSEAFSSVDQGNQKPPEGDVAGGGGG 333
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.334 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,513,054
Number of Sequences: 28460
Number of extensions: 109644
Number of successful extensions: 1091
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of query: 388
length of database: 4,897,600
effective HSP length: 92
effective length of query: 296
effective length of database: 2,279,280
effective search space: 674666880
effective search space used: 674666880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0023.9