BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.8
(85 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP047502 61 2e-17
BP055341 31 0.045
TC19706 29 0.17
TC19179 27 0.65
TC8798 26 1.1
TC15412 similar to PIR|T10841|T10841 inorganic diphosphatase - ... 26 1.1
TC11798 26 1.4
TC8804 similar to UP|Q8L6A7 (Q8L6A7) Carboxypeptidase type III, ... 26 1.4
BP057687 25 1.9
TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%) 25 2.5
BP064363 25 2.5
TC12322 weakly similar to UP|Q8DHD9 (Q8DHD9) Tlr2020 protein, pa... 25 3.2
TC15520 similar to UP|Q8L5E1 (Q8L5E1) Acid phosphatase , partia... 25 3.2
BP064514 25 3.2
TC19003 25 3.2
TC10398 weakly similar to UP|Q9FII5 (Q9FII5) Receptor protein ki... 24 4.2
TC10796 similar to GB|AAO64916.1|29029074|BT005981 At5g53430 {Ar... 24 4.2
AV415490 24 4.2
TC12719 homologue to UP|ZFP1_ARATH (Q42485) Zinc finger protein ... 24 4.2
TC13022 similar to UP|Q7XQH1 (Q7XQH1) OJ000114_01.6 protein, par... 24 5.5
>BP047502
Length = 486
Score = 60.8 bits (146), Expect(2) = 2e-17
Identities = 31/41 (75%), Positives = 33/41 (79%)
Frame = -1
Query: 1 MILIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQ 41
MILI VM FYF FCNFIGLITMGLLLRIGIGD + +LQ
Sbjct: 438 MILIRVMLFYFSFCNFIGLITMGLLLRIGIGDGELI*KILQ 316
Score = 41.6 bits (96), Expect(2) = 2e-17
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -2
Query: 33 VAWLSFVLQLKTKEEIRGRR 52
VAWLSFVLQLKT+EEIRGRR
Sbjct: 233 VAWLSFVLQLKTQEEIRGRR 174
>BP055341
Length = 463
Score = 30.8 bits (68), Expect = 0.045
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 30 IGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLLLDLMFSMLQFGYTLFLLV 80
I + W F + L + E N+H+ +LL L S LQ+ YT FL+V
Sbjct: 201 IQGIPWEHFFISLPWELEHNRL*WKNVHMKRILLCLFISYLQY*YTNFLIV 49
>TC19706
Length = 491
Score = 28.9 bits (63), Expect = 0.17
Identities = 11/35 (31%), Positives = 21/35 (59%)
Frame = +3
Query: 24 LLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHL 58
+L + + V W+ + L+TKE +GR +++HL
Sbjct: 300 VLFHLVVHLVVWICLYVSLRTKENFKGRDMLHMHL 404
>TC19179
Length = 585
Score = 26.9 bits (58), Expect = 0.65
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +2
Query: 1 MILIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRG 50
+ LI FF F+FCNF+ LLL+I LKTK E RG
Sbjct: 338 IFLIFFNFFAFYFCNFLEF----LLLQI-------------LKTKAENRG 436
>TC8798
Length = 627
Score = 26.2 bits (56), Expect = 1.1
Identities = 17/72 (23%), Positives = 32/72 (43%), Gaps = 4/72 (5%)
Frame = +3
Query: 3 LIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWL----SFVLQLKTKEEIRGRRGMNLHL 58
L+ + + F+GL + L +G+ WL F L + T+ +G+ L
Sbjct: 273 LVWIFSLLVWIIKFVGLHGLNFPLLVGLRGFRWLWRIARFYLIISTQVSCCRLKGIATKL 452
Query: 59 LTLLLDLMFSML 70
L L +++F +L
Sbjct: 453 LILCQNMLFLLL 488
>TC15412 similar to PIR|T10841|T10841 inorganic diphosphatase - mung bean
{Vigna radiata;} , partial (20%)
Length = 536
Score = 26.2 bits (56), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 8 FFYFFFCNFIGLITMGLLLRIGIG 31
FF+FFF F L TMG +L +G
Sbjct: 14 FFFFFFFFFFFLTTMGAVLLPDLG 85
>TC11798
Length = 521
Score = 25.8 bits (55), Expect = 1.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 6 VMFFYFFFCNFI 17
V+FF+FFFCN +
Sbjct: 320 VVFFFFFFCNIL 355
>TC8804 similar to UP|Q8L6A7 (Q8L6A7) Carboxypeptidase type III, partial
(63%)
Length = 1210
Score = 25.8 bits (55), Expect = 1.4
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = -3
Query: 15 NFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHL 58
+F+ + + LL + + W+SF+L+ + E I + + +++
Sbjct: 356 HFVDAVIVSLLNYAHVHCIIWVSFILKSRISESITNGKSLQINM 225
>BP057687
Length = 573
Score = 25.4 bits (54), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL I +AW FV + +T+
Sbjct: 395 IIMGLLLFTPIAFLAWFPFVSEFQTR 318
>TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%)
Length = 786
Score = 25.0 bits (53), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = -1
Query: 54 MNLHLLTLLLDLMFSMLQFGYTLFLLVFT 82
++LHLL L L L L+ ++ FLL F+
Sbjct: 114 LSLHLLLLSLSLPPIFLRISFSFFLLCFS 28
>BP064363
Length = 527
Score = 25.0 bits (53), Expect = 2.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 7 MFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVL 40
M F FC+FI L + + + + V WL F+L
Sbjct: 159 MLLSFMFCSFIFLFSATVASWL*VS*VPWLLFML 58
>TC12322 weakly similar to UP|Q8DHD9 (Q8DHD9) Tlr2020 protein, partial
(6%)
Length = 357
Score = 24.6 bits (52), Expect = 3.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 55 NLHLLTLLLDLMFSMLQFGYTL---FLLVFTDF 84
+LH+L L +L F LQF L FL T F
Sbjct: 26 SLHILRFLFELPFQWLQFAVPLASPFLSTLTPF 124
>TC15520 similar to UP|Q8L5E1 (Q8L5E1) Acid phosphatase , partial (17%)
Length = 474
Score = 24.6 bits (52), Expect = 3.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 37 SFVLQLKTKEEIRGRRGMNLHLLTLLLDLMFSM 69
SFVL + R RR +N HLL ++D + SM
Sbjct: 146 SFVLHNQYWGSDRRRRKLNKHLLLTVIDEVVSM 244
>BP064514
Length = 468
Score = 24.6 bits (52), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +2
Query: 53 GMNLHLLTLLLDLMFSMLQFGYTLFLL 79
G+N H+L L+ L + QF T FL+
Sbjct: 44 GLNFHMLGLMYLLPMCIFQFXCTSFLM 124
>TC19003
Length = 467
Score = 24.6 bits (52), Expect = 3.2
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +1
Query: 2 ILIGVMFFYFFFCNFIGLIT 21
+++ ++FF+FFFC F + +
Sbjct: 325 LIMCLVFFFFFFCYFFSVFS 384
>TC10398 weakly similar to UP|Q9FII5 (Q9FII5) Receptor protein kinase-like
protein, partial (5%)
Length = 602
Score = 24.3 bits (51), Expect = 4.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 1 MILIGVMFFYFFFCNFIGLITMGLL 25
MI +G FF+FFF F LI GL+
Sbjct: 405 MIEVGFFFFFFFFDIF--LIVEGLV 473
>TC10796 similar to GB|AAO64916.1|29029074|BT005981 At5g53430 {Arabidopsis
thaliana;}, partial (5%)
Length = 519
Score = 24.3 bits (51), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Frame = -1
Query: 8 FFYFFFCNFIGLITMGLL--LRIGIGDVAWLS 37
FF FFF F GLI + L LR + W+S
Sbjct: 327 FFLFFFSLFFGLIKITALV*LRFSL*RRGWVS 232
>AV415490
Length = 377
Score = 24.3 bits (51), Expect = 4.2
Identities = 7/16 (43%), Positives = 13/16 (80%)
Frame = +1
Query: 1 MILIGVMFFYFFFCNF 16
++++G +FF+FFF F
Sbjct: 313 VVIVGRVFFFFFFSGF 360
>TC12719 homologue to UP|ZFP1_ARATH (Q42485) Zinc finger protein 1, partial
(18%)
Length = 548
Score = 24.3 bits (51), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (50%), Gaps = 8/39 (20%)
Frame = -3
Query: 6 VMFFYFFFCNFI-GLITMG-------LLLRIGIGDVAWL 36
+ FF+FF C F G++ +G +LL I + WL
Sbjct: 183 IFFFFFFSCGFCNGVLGLGGASGREKILLSPSIAALCWL 67
>TC13022 similar to UP|Q7XQH1 (Q7XQH1) OJ000114_01.6 protein, partial (5%)
Length = 565
Score = 23.9 bits (50), Expect = 5.5
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +3
Query: 4 IGVMFFYFFFC 14
+ ++FF+FFFC
Sbjct: 135 VAILFFFFFFC 167
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.343 0.159 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,710,338
Number of Sequences: 28460
Number of extensions: 23362
Number of successful extensions: 455
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of query: 85
length of database: 4,897,600
effective HSP length: 61
effective length of query: 24
effective length of database: 3,161,540
effective search space: 75876960
effective search space used: 75876960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0023.8