TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.7
         (362 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP052706                                                               78  2e-16
TC8970                                                                 44  4e-05
BP061914                                                               31  0.28
TC7881                                                                 31  0.37
TC18328 weakly similar to UP|HSP2_PANPA (P35299) Sperm histone P...    30  0.48
AV408648                                                               30  0.83
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    29  1.4
AV418491                                                               28  1.8
TC9462 similar to UP|O49840 (O49840) Protein kinase (AT2G02800/T...    28  2.4
AV408058                                                               28  2.4
TC12695 similar to UP|Q9SAK1 (Q9SAK1) T8K14.10, partial (17%)          28  3.1
BP054465                                                               27  4.1
AV769326                                                               27  4.1
BP057299                                                               27  4.1
BP039012                                                               27  4.1
AW720191                                                               27  5.4
TC16857 similar to PIR|T51729|T51729 arginine-tRNA-protein trans...    27  5.4
BP068663                                                               27  7.0
TC19483 similar to UP|Q9ZR87 (Q9ZR87) Bifunctional nuclease, par...    27  7.0
TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kina...    27  7.0

>BP052706 
          Length = 503

 Score = 78.2 bits (191), Expect(2) = 2e-16
 Identities = 42/57 (73%), Positives = 46/57 (80%)
 Frame = +2

Query: 82  SPISATLILLTHGVQVLVRVLNSNHFAPVPPRMANHHEPVVDHLAVWRPSNHKQIDK 138
           SPIS+T ILLTH V+VLV VLN  HFA   P MANHH+PVVDHLAV RPS HKQI+K
Sbjct: 203 SPISSTRILLTHEVRVLVGVLN--HFASNLP*MANHHKPVVDHLAVXRPSKHKQINK 367



 Score = 23.5 bits (49), Expect(2) = 2e-16
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +1

Query: 136 IDKQTSKQDSARVNSR 151
           +  QT KQ SARVNS+
Sbjct: 343 VQTQTDKQGSARVNSQ 390


>TC8970 
          Length = 609

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = -3

Query: 100 RVLNSNHFAPVPPRMANHHEPVVDHLAVWRPSNHKQIDKQTS 141
           R L+S+HFAP PPR  N  E  V+ LA  RP+ HK  +K T+
Sbjct: 151 RRLSSSHFAPGPPRTTNLLESSVERLAAGRPTKHKHTNKATA 26


>BP061914 
          Length = 274

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 277 PHSVSPVVAAAHPLDVRNLGSHYHLKVFYIRLIHYEVHLQNRSLICSFVPK 327
           PH  SP+      + ++ L   +H K+F   L ++  +L N + +C FVP+
Sbjct: 157 PHYSSPLYPGPQTIQLQTLYLKFH-KIFSYHLSYFH-YLSNNTCVCKFVPR 11


>TC7881 
          Length = 1321

 Score = 30.8 bits (68), Expect = 0.37
 Identities = 25/84 (29%), Positives = 38/84 (44%), Gaps = 5/84 (5%)
 Frame = +1

Query: 262 LPGTSSQCLTS--KECHPHSVSPVVAAAHPLDVRNLGSHYHLKVFYIRLIHYEVHLQ--- 316
           L GT S+ + S    C P  ++ +V AA    VRNL  + HL +  +R+     HL+   
Sbjct: 25  LGGTLSRSIRSVLDICFPLEITTMVRAALIRSVRNLNRNSHLPMLSLRVRFASDHLEGHF 204

Query: 317 NRSLICSFVPKTTTSRDPHLPPSN 340
           N       +PK+   R    PP +
Sbjct: 205 NSEKGAMELPKSPEVRSTIAPPED 276


>TC18328 weakly similar to UP|HSP2_PANPA (P35299) Sperm histone P2 precursor
           (Protamine P2), partial (25%)
          Length = 517

 Score = 30.4 bits (67), Expect = 0.48
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 36  WSMTAVLFQIWTSVGSGGGGRRLAAMAEAAGERCFGGGGWE 76
           W    VLF  ++  G+  GG     M  A   RC GGG WE
Sbjct: 227 WKEKEVLFFFFSLTGAESGG----GMVAADEGRCCGGGDWE 117


>AV408648 
          Length = 430

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 172 FIYDLSNSQDGHNPPCLTISTCYAGHEQE----QYNSTWL 207
           F+  LSN  DGH P  +T++ C + H ++    Q+ S WL
Sbjct: 249 FLCFLSNLSDGHGPYHVTLAGCISTHIRKTLS*QWPSQWL 368


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 52  GGGGRRLAAMAEAAGERCFGGGG 74
           GGGGRR        G R +GGGG
Sbjct: 367 GGGGRREGGYGGGGGSRGYGGGG 435


>AV418491 
          Length = 234

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 35  SWSMTAVLFQIWTSVGSGGGGRRLAAMAEAAGERCFGG 72
           SW    VL   W  +  GGGGRRL    E  G + F G
Sbjct: 184 SWRRALVL---WRVLSGGGGGRRLLGEGE*WGRQRFQG 80


>TC9462 similar to UP|O49840 (O49840) Protein kinase (AT2G02800/T20F6.6) ,
           partial (37%)
          Length = 576

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 291 DVRNLGSHYHLKVFYIRLIHYEVHLQNRSLICSFVPKTTTSRDPHLPPSNPSRKSF 346
           +V  LG  YH  +  ++LI Y +  +NR L+  F+PK   S D HL    P   S+
Sbjct: 394 EVNYLGQLYHPNL--VKLIGYCLDGENRLLVYEFMPK--GSLDNHLFTRGPQPLSW 549


>AV408058 
          Length = 386

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 102 LNSNHFAPVPPRMANHHEPV 121
           L+S+HFAP  PRM  +HE +
Sbjct: 318 LSSSHFAPGLPRMTKNHERI 259


>TC12695 similar to UP|Q9SAK1 (Q9SAK1) T8K14.10, partial (17%)
          Length = 571

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 213 YVRVSQKTIHSHKDSCLDKDYYLYNTLR--YSQEQYNSAL 250
           +V ++   +H+HK     KD+Y+Y+T R   + E  NSA+
Sbjct: 328 WVHITW*IMHTHKKIKFQKDFYIYHTQRRVCATELANSAV 209


>BP054465 
          Length = 517

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 RSILPGTSSQCLTSKECHPHSVSPVVA 285
           RS+L G  S  L S +CHP  VSP V+
Sbjct: 274 RSVLRGCMSSTLHSCKCHPI*VSPRVS 354


>AV769326 
          Length = 262

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 333 DPHLPPSNPSRKSFDP 348
           DPH PPSNP   + DP
Sbjct: 95  DPHSPPSNPPSAASDP 142


>BP057299 
          Length = 551

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = +3

Query: 47  TSVGSGGGGRRLAAMAEAAGERCFGGGGWEKTNQMS 82
           T+ G GGGG       +  G+R FGG  W +   ++
Sbjct: 291 TAAGGGGGGSNSGD--DERGDRSFGGNRWPRQETLA 392


>BP039012 
          Length = 582

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 50  GSGGGGRRLAAMAEAAGERCFGGGGW 75
           G GGGG R   + EA G R   GGG+
Sbjct: 257 GVGGGGEREPPLCEAGGGRRGRGGGF 180


>AW720191 
          Length = 508

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 14/42 (33%), Positives = 19/42 (44%)
 Frame = -1

Query: 34  KSWSMTAVLFQIWTSVGSGGGGRRLAAMAEAAGERCFGGGGW 75
           +SW +       W +  S  GGR   +M +   E   GGGGW
Sbjct: 367 QSWILRRRRAGRWVAGVSRSGGR--GSMMDGGSEAACGGGGW 248


>TC16857 similar to PIR|T51729|T51729 arginine-tRNA-protein transferase 1
           [imported] - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (3%)
          Length = 802

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 16/73 (21%), Positives = 30/73 (40%)
 Frame = -1

Query: 245 QYNSALLTVTSYYTRSILPGTSSQCLTSKECHPHSVSPVVAAAHPLDVRNLGSHYHLKVF 304
           Q N+    +T +   S +  T    +++ +   H   P ++   PL +  L  H H  V 
Sbjct: 430 QENTPFAQITLFPQPSYISATGIPSISAAQHRRHCADPCISHEIPLSLARLC*HQHFPVQ 251

Query: 305 YIRLIHYEVHLQN 317
            +     +VH Q+
Sbjct: 250 QMMYFLGQVHHQS 212


>BP068663 
          Length = 562

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 160 NTGLVFNHFCSGFIYDLSNSQDGHNP--PCLTISTCYAGHEQEQYNSTW 206
           NTG V   FC   I  L ++Q  H P  P  +    +  +++E  NS W
Sbjct: 206 NTGTVARSFCVKQIR*LWSTQKVHGPRQPANSFFNLFQSNKKETTNSGW 352


>TC19483 similar to UP|Q9ZR87 (Q9ZR87) Bifunctional nuclease, partial (33%)
          Length = 532

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 273 KECHPHSVSPVVAAAHPLDVRNLGS 297
           ++CH  S++  + A+H + V NLGS
Sbjct: 111 EQCHSSSITGYLRASHTVQVVNLGS 37


>TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kinase,
           chloroplast precursor  , partial (86%)
          Length = 1857

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 20/82 (24%), Positives = 33/82 (39%), Gaps = 5/82 (6%)
 Frame = +2

Query: 277 PHSVSPVVAAAHPLDVRNLGSHY----HLKVFYIRLIHYEVHLQNRSL-ICSFVPKTTTS 331
           P S+SP+  +  P  +  L +      H   F    + +    Q++ L + S  P     
Sbjct: 8   PFSISPISTS*KPSKLSTLSAFSTEKNHTLTFLSLSLEWHQRQQHQPLSLSSAPPPPPPP 187

Query: 332 RDPHLPPSNPSRKSFDPQHNNG 353
             PH PP++ SR      H+ G
Sbjct: 188 PPPHPPPASTSRPPSASAHSGG 253


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.132    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,484,114
Number of Sequences: 28460
Number of extensions: 144791
Number of successful extensions: 1094
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of query: 362
length of database: 4,897,600
effective HSP length: 91
effective length of query: 271
effective length of database: 2,307,740
effective search space: 625397540
effective search space used: 625397540
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)