TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.3
         (106 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780221                                                               36  9e-04
BP060613                                                               32  0.013
AV767121                                                               32  0.016
BP033834                                                               28  0.31
AV780705                                                               26  0.90
BP078012                                                               25  2.6
TC18058 homologue to UP|Q8W0I1 (Q8W0I1) Ubiquitin-conjugating en...    24  3.4
AV777280                                                               24  4.5
TC12056 weakly similar to UP|ILEU_HUMAN (P30740) Leukocyte elast...    24  4.5
TC18325                                                                23  5.8
CB829501                                                               23  5.8
TC19543 similar to UP|Q9LK88 (Q9LK88) NADPH:quinone oxidoreducta...    23  7.6
TC18604 homologue to UP|KPPR_MESCR (P27774) Phosphoribulokinase,...    23  7.6
BP050969                                                               23  9.9
TC15242 similar to UP|ASSY_ARATH (Q9SZX3) Argininosuccinate synt...    23  9.9
TC10966                                                                23  9.9

>AV780221 
          Length = 461

 Score = 36.2 bits (82), Expect = 9e-04
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +3

Query: 6   VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDR 44
           V+W  V   KD GGL V+     N ALLGK  WRM ++R
Sbjct: 153 VKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKER 269


>BP060613 
          Length = 378

 Score = 32.3 bits (72), Expect = 0.013
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 4   HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
           H  +W+ +T  KD GGL  ++    N ALL K  WR+
Sbjct: 76  HWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRI 186


>AV767121 
          Length = 525

 Score = 32.0 bits (71), Expect = 0.016
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 6   VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWR 39
           V+W  V   K+ GGL +++    N ALLGK  WR
Sbjct: 191 VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWR 292


>BP033834 
          Length = 534

 Score = 27.7 bits (60), Expect = 0.31
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 4  HLVRWEKVTNEKDCGGLRVRETRK 27
          HLV W K T+ K+  GL  RE RK
Sbjct: 25 HLVSWGKATHVKNY*GLGFREARK 96


>AV780705 
          Length = 524

 Score = 26.2 bits (56), Expect = 0.90
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 15  KDCGGLRVRETRKGNIALLGKPVWRM 40
           K+ GG+  R+ R  N+A L +  WR+
Sbjct: 187 KEKGGVGFRDLRTQNLAFLARQAWRV 110


>BP078012 
          Length = 361

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = -1

Query: 2   CWHLVRW-EKVTN 13
           CWH+V W EK+ N
Sbjct: 124 CWHMVHW*EKINN 86


>TC18058 homologue to UP|Q8W0I1 (Q8W0I1) Ubiquitin-conjugating enzyme E2
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein) ,
           complete
          Length = 806

 Score = 24.3 bits (51), Expect = 3.4
 Identities = 11/38 (28%), Positives = 17/38 (43%), Gaps = 2/38 (5%)
 Frame = +1

Query: 3   WHLVRWEKVTNEKDCGGLRVRETR--KGNIALLGKPVW 38
           W L+ W K+    +C G+     R   GN+  L +  W
Sbjct: 520 WRLMIWWKILASNNCSGVYAINCRIENGNLEELSELFW 633


>AV777280 
          Length = 511

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 61  NSWSVKLKVTCRTLGTSLIGLESD*GMVSLACYNKEI 97
           N W V     C TL T   G+E +    S ACY +++
Sbjct: 243 NGWMVYTSQVCETLLTRGSGVEIE----S*ACYKRQL 145


>TC12056 weakly similar to UP|ILEU_HUMAN (P30740) Leukocyte elastase
          inhibitor (LEI) (Monocyte/neutrophil elastase
          inhibitor) (M/NEI) (EI), partial (6%)
          Length = 401

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 6  VRWEKVTNEKDCGG 19
          VR E + NEKDC G
Sbjct: 91 VRMENLPNEKDCSG 50


>TC18325 
          Length = 513

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 10/22 (45%), Positives = 17/22 (76%)
 Frame = +3

Query: 84  D*GMVSLACYNKEIVPLVSEMA 105
           D*G++S +C N+ IV  ++E+A
Sbjct: 177 D*GLISSSCCNQLIVVTLNEVA 242


>CB829501 
          Length = 440

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (55%), Gaps = 2/32 (6%)
 Frame = +1

Query: 18 GGLRVRETRKGN--IALLGKPVWRMSQDRKCI 47
          GG +  E   GN  IA  G+P W++  DR+ +
Sbjct: 67 GGEKGSEVSDGNERIAEEGRPRWQVHMDRQLV 162


>TC19543 similar to UP|Q9LK88 (Q9LK88) NADPH:quinone oxidoreductase, partial
           (67%)
          Length = 568

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 2   CWHLVRWEKVT 12
           CW  +RW K+T
Sbjct: 175 CWRRLRWRKIT 207


>TC18604 homologue to UP|KPPR_MESCR (P27774) Phosphoribulokinase,
           chloroplast precursor  (Phosphopentokinase) (PRKASE)
           (PRK) , partial (45%)
          Length = 724

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = +3

Query: 55  SI*KIHNSWSVKLKVTCRTLGT 76
           S+  +  SWS+K+   C TLG+
Sbjct: 558 SLLNLPKSWSLKVFTQCMTLGS 623


>BP050969 
          Length = 557

 Score = 22.7 bits (47), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 60  HNSWSVKLKVTCRTLGTSLIGLESD 84
           HN+WS++  +T   L TS IG  S+
Sbjct: 433 HNTWSIRKNLT--LLITSTIGYPSE 501


>TC15242 similar to UP|ASSY_ARATH (Q9SZX3) Argininosuccinate synthase,
           chloroplast precursor  (Citrulline--aspartate ligase) ,
           partial (57%)
          Length = 1296

 Score = 22.7 bits (47), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (65%)
 Frame = -3

Query: 1   TCWHLVRWEKVTNEKDCG 18
           +C   V+W ++  E+DCG
Sbjct: 184 SCVEYVKW*QLMEEEDCG 131


>TC10966 
          Length = 431

 Score = 22.7 bits (47), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 41  SQDRKCI*AEC*RASI*KIHNSWSVKLKVTCRT 73
           S+++ CI ++     +  I NS S +L   CRT
Sbjct: 377 SKEKSCIISDTRNCKVLSIFNSQSCQLSK*CRT 279


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.341    0.146    0.527 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,232,305
Number of Sequences: 28460
Number of extensions: 27832
Number of successful extensions: 172
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of query: 106
length of database: 4,897,600
effective HSP length: 82
effective length of query: 24
effective length of database: 2,563,880
effective search space: 61533120
effective search space used: 61533120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 47 (22.7 bits)