BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.16
(463 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI967617 56 4e-12
CB827002 61 3e-10
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 50 6e-07
AV765466 36 0.012
TC12220 35 0.020
BP038017 33 0.076
CN825057 32 0.29
BP065711 31 0.49
TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-fi... 30 1.1
AV425218 30 1.1
TC8058 weakly similar to UP|Q94FM7 (Q94FM7) Elicitor-inducible c... 29 1.4
BU494347 28 2.5
TC12870 homologue to GB|AAC39461.1|3153205|ATU80922 serine/threo... 27 5.5
TC9207 similar to UP|Q9ZPE9 (Q9ZPE9) T3H13.4 protein, partial (11%) 27 7.1
BP077937 27 7.1
TC16996 similar to UP|Q8HLG5 (Q8HLG5) ATPase subunit 6, partial ... 27 7.1
TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro prote... 27 7.1
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 27 7.1
BP084072 27 9.3
TC14263 similar to UP|Q8S4C0 (Q8S4C0) Isoflavone synthase, parti... 27 9.3
>AI967617
Length = 442
Score = 55.8 bits (133), Expect(2) = 4e-12
Identities = 35/105 (33%), Positives = 58/105 (54%), Gaps = 1/105 (0%)
Frame = +1
Query: 344 DFNDATQKASELIEQSKAKKSCQREGSLSLSQTNILNLKDPIRL-RRKGRGTKNKSSLGL 402
D N+A + A++ IE +AK+SCQ+ G +S+ + I +K P+ L +K +
Sbjct: 118 DXNNARKIANQQIELGRAKRSCQK-GDVSMKEN*ICYVKGPVPL*GQKCVVARVHRLRE* 294
Query: 403 TVKHVINCLIFKTPGHNKLTGTYCSQQGHTMSDFEGGEDEINLFT 447
K V+NC + K PGHNKLT T+ + G ++ + E E + F+
Sbjct: 295 DGKRVLNCSVCKQPGHNKLTCTFLTANGESVVNIGSDESEYDHFS 429
Score = 32.0 bits (71), Expect(2) = 4e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2
Query: 323 RCSALMDLYRALGYLNSNT 341
RC ALMDLYR L LNS+T
Sbjct: 56 RCGALMDLYRVLSELNSDT 112
>CB827002
Length = 534
Score = 61.2 bits (147), Expect = 3e-10
Identities = 42/171 (24%), Positives = 71/171 (40%)
Frame = +1
Query: 106 QDNCWVKETYEKRSIWVAAHLRGKFFAGCRTTSRCEGFQSELGKHVHSRYNLTDFLQQLQ 165
QD+ W+ Y HLR FFA T R + S +V++ NL F + +
Sbjct: 28 QDHEWLS-LYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYE 204
Query: 166 NCVKHMRFREIEDDCHSIHGVPAMKTNLESLEMSATKHFTNNVFLLFRPVLQHAPLMKVL 225
++ +E+ D +++ +P ++T +E A++ +T +F+ F+ L
Sbjct: 205 KALESRNEKEVRADYDTMNTLPVLRTP-SPMEKQASELYTRKIFMRFQEELVGTLTFMAS 381
Query: 226 DCTDAVTCLNYTVAKLSFLAKEWHVSVSSDNKDFKYSCMKMESRGLACEHI 276
D + Y VAK K ++V + SC E GL C HI
Sbjct: 382 KADDDGEVITYHVAKFGEDHKAYYVKFNVLEMKASCSCQMFEFSGLLCRHI 534
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 50.4 bits (119), Expect = 6e-07
Identities = 23/59 (38%), Positives = 34/59 (56%)
Frame = +2
Query: 5 DSVMTMQFMVELASKDDNYFCEHIADQINSLQHLFWRDGVGRLSYQVYGDVLAFDVTEK 63
D+ + ++ A D +F + SL++LFW DGV R+ Y V+GDV+AFD T K
Sbjct: 149 DAAAALSYLEGKADNDPMFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYK 325
>AV765466
Length = 599
Score = 36.2 bits (82), Expect = 0.012
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 260 KYSCMKMESRGLACEHIVDVLAHLRIEELSECFIFKRWSKGAK 302
K C E RG+ C H + +L+ R++E+ + ++ RW K +
Sbjct: 595 KCDCRLFEFRGILCRHSLAILSQERVKEVPDRYVLDRWRKNMR 467
>TC12220
Length = 473
Score = 35.4 bits (80), Expect = 0.020
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 267 ESRGLACEHIVDVLAHLRIEELSECFIFKRWSKGAKDGVY 306
E G+ C H + V L + E+ +I RW++ A+DGV+
Sbjct: 1 EYEGVLCRHPLRVFXILELREVPSRYILHRWTRNAEDGVF 120
>BP038017
Length = 570
Score = 33.5 bits (75), Expect = 0.076
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 2 LKNDSVMTMQFMVELASKDDNYFCEHIADQINSLQHLFWRDGVGRLSYQVYGDVLAFD 59
L D+ + + ++ K+ ++ D N + ++FW D R +Y +GD + FD
Sbjct: 158 LGRDAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYNYFGDAVIFD 331
>CN825057
Length = 721
Score = 31.6 bits (70), Expect = 0.29
Identities = 13/61 (21%), Positives = 32/61 (52%)
Frame = +1
Query: 1 MLKNDSVMTMQFMVELASKDDNYFCEHIADQINSLQHLFWRDGVGRLSYQVYGDVLAFDV 60
M + D+ + +++ + ++ N+F ++ L+++FW D Y + DV++FD
Sbjct: 466 MDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDT 645
Query: 61 T 61
+
Sbjct: 646 S 648
>BP065711
Length = 524
Score = 30.8 bits (68), Expect = 0.49
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 86 GFKNCMFRKKWDELVLNLGLQDNCW 110
GF +C R++W EL LG+ + CW
Sbjct: 215 GFPSCYRRRRWPELWKVLGVGERCW 289
>TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-finger,
complete
Length = 2092
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
Frame = +1
Query: 142 GFQSELGKHVHSRYNLT--DFLQQLQNCVKHMRFREIEDDCHSIH 184
G ++ K S NLT +L LQ+ + FRE+E DC+ +H
Sbjct: 1930 G*DEQINKLYCSMINLTLYIYLDILQSGGNRLAFREVEQDCYCVH 2064
>AV425218
Length = 419
Score = 29.6 bits (65), Expect = 1.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 92 FRKKWDELVLNLGLQDNCWVKETYEKR 118
F + W ++V + GL+DN W+ E + +R
Sbjct: 335 FERNWKKIVEDFGLEDNEWLNELFLER 415
>TC8058 weakly similar to UP|Q94FM7 (Q94FM7) Elicitor-inducible cytochrome
P450, partial (28%)
Length = 887
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 168 VKHMR-FREIEDDCHSIHGVPAMKTNLESLEMSATKHFTNNVFLLFRPVLQHAPLMKVLD 226
++H R ++++D+ ++ G+ M + ++ F L P APL+ +
Sbjct: 68 IRHPRVMKKLQDELKNVVGMGRMVEEADLPKLPYLDMVMKETFRLHPP----APLLPPRE 235
Query: 227 CTDAVTCLNYTVAKLS-FLAKEW 248
CT+ +T Y +AK S L W
Sbjct: 236 CTEDITINGYFIAKKSRVLVNSW 304
>BU494347
Length = 521
Score = 28.5 bits (62), Expect = 2.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 12 FMVELASKDDNYFCEHIADQINSLQHLFWRDG 43
++++L+ + + FC H Q NS+ H+ WR G
Sbjct: 428 YILQLSLSNASNFCMHHNPQKNSVLHMRWRPG 333
>TC12870 homologue to GB|AAC39461.1|3153205|ATU80922 serine/threonine
protein phosphatase type one {Arabidopsis thaliana;} ,
partial (55%)
Length = 546
Score = 27.3 bits (59), Expect = 5.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 356 IEQSKAKKSCQREGSLSLSQTNILNLKDPIRL 387
+ +S+ ++ C + LSQ N+L L+ PIR+
Sbjct: 113 LSESEIRQLCVNARQIFLSQPNLLELRAPIRI 208
>TC9207 similar to UP|Q9ZPE9 (Q9ZPE9) T3H13.4 protein, partial (11%)
Length = 586
Score = 26.9 bits (58), Expect = 7.1
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = -3
Query: 206 NNVFLLFRPVLQHAPL-MKVLDCTDAVTCLNYTVAKLSFL 244
N ++ R LQ P ++ DCT ++ LNYT L+FL
Sbjct: 458 NKFMMIKRFDLQRKPTSQRITDCTSSLLNLNYTH*SLNFL 339
>BP077937
Length = 469
Score = 26.9 bits (58), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +1
Query: 281 AHLRIEELSECFIFKRWSKGAKDGVYS 307
+HL+ L + F+ W KG KDG+ S
Sbjct: 79 SHLQHN*LKKILSFELWKKGIKDGILS 159
>TC16996 similar to UP|Q8HLG5 (Q8HLG5) ATPase subunit 6, partial (7%)
Length = 534
Score = 26.9 bits (58), Expect = 7.1
Identities = 11/41 (26%), Positives = 26/41 (62%)
Frame = +3
Query: 173 FREIEDDCHSIHGVPAMKTNLESLEMSATKHFTNNVFLLFR 213
+ ++E C SI+ VP+ + +ESL+ S++ + +F +++
Sbjct: 162 WNQVEILCESIYPVPSSEVGMESLKWSSSGCLCSVLFAVYK 284
>TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro protein (Sjogren
syndrome type A antigen) (SS-A) (Ro(SS-A)) (52 kDa
ribonucleoprotein autoantigen Ro/SS-A), partial (5%)
Length = 545
Score = 26.9 bits (58), Expect = 7.1
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = +2
Query: 370 SLSLSQTNILNLKDPIRLRRKGRGTKNKSSLGLTVKHVINCLI 412
S+ + IL K +R R+G NK +LG+TV+ + C+I
Sbjct: 257 SVRPKMSRILGAKTSVREGREG*A--NKGTLGITVQSIPGCII 379
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198
transposase-like {Oryza sativa (japonica
cultivar-group);}, partial (8%)
Length = 488
Score = 26.9 bits (58), Expect = 7.1
Identities = 11/61 (18%), Positives = 30/61 (49%)
Frame = +1
Query: 1 MLKNDSVMTMQFMVELASKDDNYFCEHIADQINSLQHLFWRDGVGRLSYQVYGDVLAFDV 60
+L ++ +Q+ ++ ++ + D + + ++FW D + Y +GD+++ D
Sbjct: 31 LLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDS 210
Query: 61 T 61
T
Sbjct: 211T 213
>BP084072
Length = 457
Score = 26.6 bits (57), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -2
Query: 408 INCLIFKTPGHNKLTGTYCSQQ 429
++C + K+PGH + T CSQQ
Sbjct: 312 LSC*LVKSPGHQARSVTNCSQQ 247
>TC14263 similar to UP|Q8S4C0 (Q8S4C0) Isoflavone synthase, partial (30%)
Length = 600
Score = 26.6 bits (57), Expect = 9.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 181 HSIHGVPAMKTNLESLEMSATKHFTNNVFLLF 212
H++ VP +TN+ S +S+ K+ TNN+ + F
Sbjct: 420 HNLMCVPLARTNVTSELLSS*KYNTNNLHVFF 515
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,713,463
Number of Sequences: 28460
Number of extensions: 129110
Number of successful extensions: 592
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of query: 463
length of database: 4,897,600
effective HSP length: 93
effective length of query: 370
effective length of database: 2,250,820
effective search space: 832803400
effective search space used: 832803400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0023.16