BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.13
(195 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 65 8e-12
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 59 6e-10
TC18577 27 2.3
TC13761 weakly similar to GB|AAO63290.1|28950733|BT005226 At5g57... 26 4.0
TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%) 26 4.0
CN825561 26 5.2
AV423739 25 8.9
BP056506 25 8.9
AV776135 25 8.9
TC8882 homologue to UP|Q43715 (Q43715) Chloroplastic outer envel... 25 8.9
TC8161 similar to UP|Q8LBV7 (Q8LBV7) Contains similarity to plas... 25 8.9
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 65.1 bits (157), Expect = 8e-12
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Frame = -3
Query: 51 RSKWLKEGDQNTKYFHSLINWRKRTNSIMGLM-IDGNWVEDPQAIKTEVQNYFEQCFTNS 109
R K LK GD NT++FH+ R+ N I+ + G WVE + + NYF +++S
Sbjct: 590 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 411
Query: 110 LGTLVR--LDEISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKF 167
+R L I K ++D N L + +E+K AV+ G K+P D N F Q+
Sbjct: 410 PLQYLRECLAPIP-KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQN 234
Query: 168 WDLLKDDFHRVLEDFWNRG 186
+++K+D + + DF++ G
Sbjct: 233 REIVKNDVNNAILDFFDHG 177
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 58.9 bits (141), Expect = 6e-10
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Frame = -3
Query: 3 EVVQKLNELDRKEEEEGLSEE--ENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
E+ + N+L+ + E+ E +RK L + W R E Q+SR KWLK GD+
Sbjct: 384 EIAELKNQLEHLQNYSNSGEDWQEIKQRKMRLKDLW---RQEELFWSQRSRIKWLKSGDK 214
Query: 61 NTKYFHSLINWRKRTNSIMGLM-IDGNWVEDPQAIKTEVQNYFEQCFTNS 109
NTK+FH+ R+ N I + + G WV AI +V +++ + ++
Sbjct: 213 NTKFFHASTVQRRERNRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKST 64
>TC18577
Length = 536
Score = 26.9 bits (58), Expect = 2.3
Identities = 9/26 (34%), Positives = 16/26 (60%)
Frame = -1
Query: 45 LLYQKSRSKWLKEGDQNTKYFHSLIN 70
L+YQKS+ W+ +G N F+ + +
Sbjct: 515 LIYQKSKQTWVNKGRMNKNQFNPMFH 438
>TC13761 weakly similar to GB|AAO63290.1|28950733|BT005226 At5g57910
{Arabidopsis thaliana;}, partial (21%)
Length = 652
Score = 26.2 bits (56), Expect = 4.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 5 VQKLNELDRKEEEEGLSEEENNERK 29
V+K E +KEEEEG EE+ ERK
Sbjct: 239 VKKQIERKKKEEEEGGVEEKT*ERK 165
>TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%)
Length = 1317
Score = 26.2 bits (56), Expect = 4.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 54 WLKEGDQNTKYFHSLINW 71
W G+ NT+ HS+INW
Sbjct: 967 WRIIGNNNTREIHSMINW 1020
>CN825561
Length = 646
Score = 25.8 bits (55), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = +2
Query: 7 KLNELDRKEEEEGLSEEENNERKWLLDEFWT 37
+ E D +EEEE EEE RK ++ + ++
Sbjct: 77 RYKEYDEEEEEEEEDEEEEGRRKRVVTDLYS 169
>AV423739
Length = 465
Score = 25.0 bits (53), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 103 EQCFTNSLGTLVRLDEISFKSISDADNELLTGRFGMEEVKG 143
++C+ + RLDEISF S++ F M+E+KG
Sbjct: 300 KECWGS*TWEAERLDEISFSSLA----------FSMDEIKG 392
>BP056506
Length = 533
Score = 25.0 bits (53), Expect = 8.9
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = -3
Query: 48 QKSRSKWLKEGDQNTKYFHSLINWRKRTN 76
QK +SKWL + Q S+I+++ +TN
Sbjct: 216 QKDKSKWLDQSFQCMFVNFSIIDFKAKTN 130
>AV776135
Length = 450
Score = 25.0 bits (53), Expect = 8.9
Identities = 10/34 (29%), Positives = 15/34 (43%), Gaps = 9/34 (26%)
Frame = -2
Query: 146 WECGGDKS---------PEPDEFNFKFIQKFWDL 170
W+C G + P PD N F+ +FW +
Sbjct: 389 WQCSGQELHNPLAY*LFPSPDCLNSSFLYQFWPI 288
>TC8882 homologue to UP|Q43715 (Q43715) Chloroplastic outer envelope
membrane protein (OEP75) precursor (OEP75), partial
(32%)
Length = 1246
Score = 25.0 bits (53), Expect = 8.9
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -3
Query: 69 INWRKRTNSIMGLMIDGNWVEDPQ 92
INWRKR + +GNW+ P+
Sbjct: 371 INWRKRVKVSW*RLKNGNWLPIPR 300
>TC8161 similar to UP|Q8LBV7 (Q8LBV7) Contains similarity to plastid
ribosomal protein L19, partial (54%)
Length = 1101
Score = 25.0 bits (53), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 59 DQNTKYFHSLINWRKRTNSIMGL 81
D+ KY H+ +NW + T S + L
Sbjct: 1069 DKKKKYIHNALNWYRYTCSFLRL 1001
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,858,681
Number of Sequences: 28460
Number of extensions: 52107
Number of successful extensions: 316
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of query: 195
length of database: 4,897,600
effective HSP length: 85
effective length of query: 110
effective length of database: 2,478,500
effective search space: 272635000
effective search space used: 272635000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0023.13