BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.12
(152 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10... 75 6e-15
BP033698 34 0.010
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 29 0.40
AV413863 28 0.53
TC13530 similar to UP|C5P1_ARATH (Q8H0V1) CDK5RAP1-like protein,... 28 0.53
AV780663 28 0.53
TC12093 28 0.69
BP057299 28 0.90
TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodula... 27 1.2
AV415539 27 1.5
TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, par... 26 2.6
TC14120 similar to UP|Q9P1T7 (Q9P1T7) HIC protein isoform p40, p... 26 3.4
AV421977 26 3.4
BP052072 26 3.4
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 26 3.4
BP055954 25 4.5
AV418586 25 5.8
TC12296 weakly similar to UP|Q8S9Y8 (Q8S9Y8) OJ1656_A11.22 prote... 25 7.6
TC9708 weakly similar to UP|Q84ME1 (Q84ME1) At5g19080/T16G12_120... 25 7.6
>TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10N7_50
{Arabidopsis thaliana;}, partial (27%)
Length = 883
Score = 74.7 bits (182), Expect = 6e-15
Identities = 40/57 (70%), Positives = 41/57 (71%)
Frame = -1
Query: 4 TVQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVA 60
T EATQNK G+GAAGTEAEA AAEG EA ART EAGG FERSSR R EVA
Sbjct: 172 TAHEATQNKSGNGAAGTEAEAPEAAEGTEAVAARTTEAGGNASFERSSRGRES*EVA 2
>BP033698
Length = 541
Score = 34.3 bits (77), Expect = 0.010
Identities = 18/34 (52%), Positives = 20/34 (57%), Gaps = 3/34 (8%)
Frame = -2
Query: 81 TAPSKRTAVKSSCHLNRCKR---GAVKALFWCSV 111
TA TA +S+ NRCKR AVK FWCSV
Sbjct: 540 TAVESFTAARSTAVQNRCKRPFLSAVKGYFWCSV 439
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 28.9 bits (63), Expect = 0.40
Identities = 20/63 (31%), Positives = 26/63 (40%), Gaps = 5/63 (7%)
Frame = -1
Query: 10 QNKRGSGAAGTEAEAAAAAE---GMEAATARTA--EAGGGEGFERSSRSRLCREVAECGQ 64
+ +R G G E + AE +E +A E GGGEG E + R E E
Sbjct: 480 EEERERGGGGREEDVRGGAEFSGDVEGVSAEEVDEECGGGEGAEGVAEGRKGAEYGEGDS 301
Query: 65 YIN 67
Y N
Sbjct: 300 YFN 292
>AV413863
Length = 397
Score = 28.5 bits (62), Expect = 0.53
Identities = 14/38 (36%), Positives = 17/38 (43%)
Frame = -2
Query: 9 TQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEG 46
T+ KRGSG G + A E T GGG+G
Sbjct: 126 TKEKRGSGT*GRKGREGEAGEKRTGRTTAVEAEGGGKG 13
>TC13530 similar to UP|C5P1_ARATH (Q8H0V1) CDK5RAP1-like protein, partial
(11%)
Length = 627
Score = 28.5 bits (62), Expect = 0.53
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSR 52
GSG +G EAAA + +E R GGG+ ER+ R
Sbjct: 371 GSGESGLSDEAAAESGALEFGGTREG-CGGGDEIERARR 258
>AV780663
Length = 568
Score = 28.5 bits (62), Expect = 0.53
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -3
Query: 18 AGTEAEAAAAAEGMEAATARTAEAGGGEGFER 49
AG A+AAAAAE E + E G GE +R
Sbjct: 143 AGAVADAAAAAEAAEKGREKKREGGEGEEEDR 48
>TC12093
Length = 356
Score = 28.1 bits (61), Expect = 0.69
Identities = 21/39 (53%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Frame = -1
Query: 3 TTVQEATQNKRGSGA-AGTEAEAAAAAEGMEAATARTAE 40
TTV EA G GA AGT A A MEAAT RTA+
Sbjct: 224 TTVAEAPLAASGPGAGAGTSVAANVAL--MEAATMRTAK 114
>BP057299
Length = 551
Score = 27.7 bits (60), Expect = 0.90
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +3
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGF-----ERSSRS 53
G G++G A AAAAA TA GGG G ER RS
Sbjct: 219 GGGSSGDAAVAAAAAAARAHDGGDTAAGGGGGGSNSGDDERGDRS 353
Score = 25.4 bits (54), Expect = 4.5
Identities = 14/37 (37%), Positives = 16/37 (42%)
Frame = +3
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERS 50
G G + +A AAAA A AGGG G S
Sbjct: 216 GGGGSSGDAAVAAAAAAARAHDGGDTAAGGGGGGSNS 326
>TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodulation aberrant
root formation protein), complete
Length = 3308
Score = 27.3 bits (59), Expect = 1.2
Identities = 23/58 (39%), Positives = 29/58 (49%), Gaps = 10/58 (17%)
Frame = +1
Query: 14 GSGAAGTEAEAAAAAEGMEA-ATARTAEAGGG---------EGFERSSRSRLCREVAE 61
G GA G +AEAA +A G+EA + GGG +ER SR R+ R AE
Sbjct: 2086 GDGARGQKAEAAPSA-GLEAHRVPEAGDQGGGCSRVFKGREYNWERRSRHRVQRFHAE 2256
>AV415539
Length = 419
Score = 26.9 bits (58), Expect = 1.5
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Frame = -3
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGG---------EGFERSSRSRLCREVAE 61
GSG+ G E G AR A+ GGG G E + CREVAE
Sbjct: 300 GSGSEGETEEPFKRGFGAAPEPARVADLGGGGGECSGENSGGDEGHGEAVDCREVAE 130
>TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (38%)
Length = 735
Score = 26.2 bits (56), Expect = 2.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Frame = +3
Query: 7 EATQNKRGS---GAAGTEAEAAAAAEGMEAATARTAEAGGG 44
+AT+ + GS GAA T A AA AATA +A G
Sbjct: 99 DATRTRHGSTHHGAAATGAAVPTAAASAAAATALRHDASPG 221
>TC14120 similar to UP|Q9P1T7 (Q9P1T7) HIC protein isoform p40, partial (7%)
Length = 588
Score = 25.8 bits (55), Expect = 3.4
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
Frame = -2
Query: 10 QNKRGSGAAGTEAEAAAAAEGM-EAATARTAEAGG 43
+ + G G E E AAA G AAT RT + GG
Sbjct: 137 EGESGEKKEGKETEGVAAAHGGGAAATQRTLDLGG 33
>AV421977
Length = 535
Score = 25.8 bits (55), Expect = 3.4
Identities = 13/29 (44%), Positives = 14/29 (47%)
Frame = -2
Query: 17 AAGTEAEAAAAAEGMEAATARTAEAGGGE 45
AAG E A AEG+ A GGGE
Sbjct: 384 AAGAELTAENLAEGVAVVDAEALVGGGGE 298
>BP052072
Length = 387
Score = 25.8 bits (55), Expect = 3.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 76 RVFVFTAPSKRTAVKSSCHLNRC 98
+V V+ K T V S CH N+C
Sbjct: 109 KVLVYKISPKLTTVWSQCHTNKC 177
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 25.8 bits (55), Expect = 3.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 21 EAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECGQYINRY 69
EAE A A ATARTA E ++ ++ E E + + Y
Sbjct: 565 EAEKAWTASATSTATARTARPWAAEKAKQVEAEKVGMEAVEGREILGEY 419
>BP055954
Length = 518
Score = 25.4 bits (54), Expect = 4.5
Identities = 15/40 (37%), Positives = 18/40 (44%)
Frame = -3
Query: 7 EATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEG 46
+A QN GAA AE+ AA G E E G+G
Sbjct: 174 DARQNNAVGGAAAVVAESTAAEVGREDEG*EEEEEAEGDG 55
>AV418586
Length = 416
Score = 25.0 bits (53), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +2
Query: 69 YKSLLPLRVFVFTAPSKRT 87
Y LPLRV+V+ PSK T
Sbjct: 332 YPLSLPLRVYVYNMPSKFT 388
>TC12296 weakly similar to UP|Q8S9Y8 (Q8S9Y8) OJ1656_A11.22 protein, partial
(10%)
Length = 613
Score = 24.6 bits (52), Expect = 7.6
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 13 RGSGAAGTEAEAAAA-AEGMEAATARTAEAGGG 44
R AG A AAAA EG AA A AGGG
Sbjct: 485 RADNLAGAAAVAAAAPGEGGAAADDGAALAGGG 387
>TC9708 weakly similar to UP|Q84ME1 (Q84ME1) At5g19080/T16G12_120, partial
(30%)
Length = 754
Score = 24.6 bits (52), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -3
Query: 22 AEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREV 59
+ + E + A R + GEGFERSS S+ R +
Sbjct: 725 SSSKGVVEVVSAHITRGNTSSPGEGFERSSNSKKPRSM 612
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,400,189
Number of Sequences: 28460
Number of extensions: 31277
Number of successful extensions: 204
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of query: 152
length of database: 4,897,600
effective HSP length: 82
effective length of query: 70
effective length of database: 2,563,880
effective search space: 179471600
effective search space used: 179471600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0023.12