TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.1
         (416 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...   166  7e-42
BP046665                                                              151  2e-37
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...   137  7e-37
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    78  8e-24
BP065488                                                               88  2e-18
BP085968                                                               65  3e-11
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    64  5e-11
AU089042                                                               55  3e-08
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     47  4e-06
TC8780                                                                 36  0.010
TC16839 similar to UP|FLS_EUSGR (Q9M547) Flavonol synthase  (FLS...    30  0.56
AV766504                                                               27  4.8
BP051237                                                               27  4.8
TC9515 similar to UP|O49081 (O49081) Clp-like energy-dependent p...    27  4.8
TC12181 similar to AAQ89616 (AAQ89616) At3g01370, partial (14%)        27  4.8
TC15539                                                                27  6.2
TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protei...    27  8.1

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score =  166 bits (420), Expect = 7e-42
 Identities = 80/128 (62%), Positives = 99/128 (76%)
 Frame = +1

Query: 289 LRNDTTLMVIALTPYIIVATALSGTKSG*SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCF 348
           L N T L+V+ L  Y+I AT ++GT  G   +IPRL + PSD+  PFKF RR FPI +CF
Sbjct: 61  LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 240

Query: 349 VMTINKSEGQSLSHVGLYLPKPVFTHGQLYVALSRVKSRKGLKIFIVDDRGVVSNCTRNV 408
            MTINKS+GQSLSHV LYL +PVFTHGQLYVALSRV+SRKGLK+ ++D+   V+N T+NV
Sbjct: 241 AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKNV 420

Query: 409 VYEEVFQN 416
           VY EVF+N
Sbjct: 421 VYREVFEN 444


>BP046665 
          Length = 524

 Score =  151 bits (381), Expect = 2e-37
 Identities = 75/131 (57%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
 Frame = -1

Query: 258 DVKCSGIPNHRIVLKVEVPIMLIRNLVQSAGLRNDTTLMVIALTPYIIVATALSGTKSG* 317
           D+ C GIPNH+I LK   PIML+RN+ Q+ G  N T L+V  L   +I AT ++ T  G 
Sbjct: 524 DITCFGIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGD 345

Query: 318 SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCFVMTINKSEGQSLSHVGLYLPKPVFTHGQL 377
             +IPR+ + PSD+  PFKF RRQFPI +C  MTINKS+GQSLSHVGLYL + VFTHGQL
Sbjct: 344 DIFIPRMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHVGLYLSRHVFTHGQL 165

Query: 378 YVAL-SRVKSR 387
           YVAL +++K R
Sbjct: 164 YVALHAKIKKR 132



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = -2

Query: 366 YLPKPVFTHGQLYVALSRVKSRKGLKIFIVDDRGVVSNCTRNVVY 410
           Y+   +++H      LS ++SRKGLK+ ++D+   V+N T+NVVY
Sbjct: 202 YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score =  137 bits (345), Expect(3) = 7e-37
 Identities = 65/112 (58%), Positives = 84/112 (74%)
 Frame = +2

Query: 305 IVATALSGTKSG*SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCFVMTINKSEGQSLSHVG 364
           I  T ++GT  G    IPR+ + PSD+  PFKF RRQ PI +CF MTINKS+G+SLSHVG
Sbjct: 137 IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVG 316

Query: 365 LYLPKPVFTHGQLYVALSRVKSRKGLKIFIVDDRGVVSNCTRNVVYEEVFQN 416
           LYL +PV THG LYVAL RV+SRK LK+ ++D+   ++N T+NVVY E+F+N
Sbjct: 317 LYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFEN 472



 Score = 31.2 bits (69), Expect(3) = 7e-37
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 277 IMLIRNLVQSAGLRNDTTLMVIAL 300
           IML+RN+VQ++GL N T L+V+ L
Sbjct: 58  IMLLRNIVQASGLCNGTRLIVVDL 129



 Score = 22.7 bits (47), Expect(3) = 7e-37
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 259 VKCSGIPNHRIVLK 272
           + CS IPNH+I  K
Sbjct: 3   ITCSDIPNHKITEK 44


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 78.2 bits (191), Expect(2) = 8e-24
 Identities = 37/69 (53%), Positives = 48/69 (68%)
 Frame = +1

Query: 289 LRNDTTLMVIALTPYIIVATALSGTKSG*SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCF 348
           L + T L+V+ L  Y+I AT ++GT  G   +IPRL + PSD+  PFKF RR FPI +CF
Sbjct: 169 LCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 348

Query: 349 VMTINKSEG 357
            MTINKS+G
Sbjct: 349 AMTINKSQG 375



 Score = 48.9 bits (115), Expect(2) = 8e-24
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 382 SRVKSRKGLKIFIVDDRGVVSNCTRNVVYEEVFQN 416
           SRV+SRKGLK+ ++D+   V+N T+NVVY EVF+N
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFEN 473


>BP065488 
          Length = 439

 Score = 88.2 bits (217), Expect = 2e-18
 Identities = 48/103 (46%), Positives = 67/103 (64%), Gaps = 2/103 (1%)
 Frame = -1

Query: 316 G*SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCFVMTINKSEGQ-SLSHVGLYLPKPVFTH 374
           G   +IPR+++ PS +  P KF R QFPI +CF MTINKS+       V L      ++H
Sbjct: 379 GDDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQXSVHYPTVALISFLACYSH 200

Query: 375 -GQLYVALSRVKSRKGLKIFIVDDRGVVSNCTRNVVYEEVFQN 416
             +LYVALS V+SRKGLK+ ++ +   V+N T+N VY+EVF+N
Sbjct: 199 MDKLYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKN 71


>BP085968 
          Length = 341

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 30/39 (76%), Positives = 35/39 (88%)
 Frame = +3

Query: 9   RTAHSRFSIPISIHEISTCNVRQGSPKAEMLQKVSLIIW 47
           RTAHSRFSI ISI++ISTCN++QGS KAE+LQK S IIW
Sbjct: 213 RTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIW 329


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 63.9 bits (154), Expect = 5e-11
 Identities = 27/45 (60%), Positives = 37/45 (82%)
 Frame = +2

Query: 209 TLESVEEVNNFMLSMIPGEETKYLSYDTPCRSDEDSDIDA*WFTS 253
           TLESVE+VN FML ++PG  T+YLS DT C+ DED+++ +*WFT+
Sbjct: 461 TLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WFTT 595


>AU089042 
          Length = 191

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 32/61 (52%), Positives = 38/61 (61%)
 Frame = +3

Query: 270 VLKVEVPIMLIRNLVQSAGLRNDTTLMVIALTPYIIVATALSGTKSG*SFYIPRLSLTPS 329
           VLK  VP+ML+ NL  S GL N T L+V  L P +I AT LSGT  G   YI  ++L PS
Sbjct: 6   VLKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPS 185

Query: 330 D 330
           D
Sbjct: 186 D 188


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 23/39 (58%), Positives = 28/39 (70%)
 Frame = +2

Query: 377 LYVALSRVKSRKGLKIFIVDDRGVVSNCTRNVVYEEVFQ 415
           LYVA+SRVKS+ GLKI I  D       T+N+VY+EVFQ
Sbjct: 2   LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQ 118


>TC8780 
          Length = 713

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 17/24 (70%), Positives = 18/24 (74%)
 Frame = +3

Query: 69  GP*NCIPYENKSLKFFSRFRVPIP 92
           GP*NC PYENKSLK F  F +P P
Sbjct: 624 GP*NCAPYENKSLKIF--FPIPDP 689


>TC16839 similar to UP|FLS_EUSGR (Q9M547) Flavonol synthase  (FLS) , partial
           (23%)
          Length = 624

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 12/17 (70%), Positives = 13/17 (75%)
 Frame = +3

Query: 68  IGP*NCIPYENKSLKFF 84
           +GP*NC PY NKS  FF
Sbjct: 570 VGP*NCTPYPNKS*NFF 620


>AV766504 
          Length = 414

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 17/44 (38%), Positives = 24/44 (53%)
 Frame = +3

Query: 269 IVLKVEVPIMLIRNLVQSAGLRNDTTLMVIALTPYIIVATALSG 312
           +V +VE P  + +NL    G+ N     VIAL PY ++A  L G
Sbjct: 54  LVREVETPNKIFQNLKTKNGV-NVQKKNVIALKPYPLIANFLMG 182


>BP051237 
          Length = 481

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 72  NCIPYENKSLKFFSRFRVPIPY 93
           NC+ Y+NKSLKF   F +P P+
Sbjct: 137 NCMTYKNKSLKF--SFLIPDPW 196


>TC9515 similar to UP|O49081 (O49081) Clp-like energy-dependent protease
           (ATP-dependent Clp protease proteolytic subunit)
           (Endopeptidase Clp) , partial (74%)
          Length = 1158

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 335 FKFSRRQFPIIMCFVMTINKSEGQSLSHVGLYLPKPVFTH 374
           +K+       I+CF  TINK++ QSL +    +P  V  H
Sbjct: 867 YKYHANNLGSILCFQYTINKTKLQSLRNRKKTVPLCVLLH 748


>TC12181 similar to AAQ89616 (AAQ89616) At3g01370, partial (14%)
          Length = 682

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 1/56 (1%)
 Frame = +2

Query: 86  RFRVPIP-YIPLGSIATTFSSAVNSTYLWKYCKVIKLTINMRLQHAASSSSSMEIK 140
           R   PIP +  LG        A     LW+ C+++K+ +   +Q+  S   + EIK
Sbjct: 278 RLSRPIPSHFALGRNKKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIK 445


>TC15539 
          Length = 722

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = -3

Query: 12  HSRFSIPISIHEISTCNVRQGSPKAEMLQ 40
           HSR  IPI    IS C +   +P+  +L+
Sbjct: 303 HSRIPIPIFFRHISMCELHNCNPRFRLLK 217


>TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protein, partial
           (79%)
          Length = 733

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
 Frame = +1

Query: 343 PIIMCFVMTINKSEGQSLSHVGLYLPKPV-------FTHGQLYVALSRVKSRKGL----- 390
           PII  F  + + S+  +L    L++ KPV       F+ G L V+     +   L     
Sbjct: 190 PIIPLFSTSASSSQSSTLCSTPLWISKPVPSPRSSPFSAGSLQVSSQTPSASHSLGRLCW 369

Query: 391 --KIFIVDDRGVVSNCTRNV 408
             + F+  D  +V  C RNV
Sbjct: 370 LPRFFVGLDSFLVMVCLRNV 429


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,178,851
Number of Sequences: 28460
Number of extensions: 96097
Number of successful extensions: 546
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of query: 416
length of database: 4,897,600
effective HSP length: 93
effective length of query: 323
effective length of database: 2,250,820
effective search space: 727014860
effective search space used: 727014860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)