BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.23
(1569 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 108 5e-24
BP053073 98 9e-21
BP085058 93 4e-19
AV780705 83 4e-16
BP069214 78 1e-14
TC19596 72 9e-13
BP060613 69 4e-12
AV767121 59 6e-09
CN825238 55 1e-07
AV411435 54 1e-07
BP076564 54 1e-07
AV780221 53 4e-07
AV407204 52 7e-07
TC11323 50 2e-06
BP043532 49 6e-06
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 47 2e-05
BP056414 47 2e-05
BE122611 45 1e-04
BP068806 44 2e-04
BP080173 44 2e-04
>TC18710
Length = 843
Score = 108 bits (271), Expect = 5e-24
Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Frame = +2
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQN-VVFKLDL 861
+K+ V RL+ + +LI P+QS FI GR DN +I+Q+ H +N +N + KLD+
Sbjct: 401 SKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHSIIKLDM 580
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W FL +L FGF V +IM VS S + NGV P + P RGLR GD
Sbjct: 581 NKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGD 760
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGEL 950
P SPYLF+ +E L++ IQ++ N G L
Sbjct: 761 PFSPYLFLFTMEVLSLLIQNSF--NMGNL 841
>BP053073
Length = 456
Score = 98.2 bits (243), Expect = 9e-21
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = -2
Query: 1481 YSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTRFHVYAAIV 1540
+S F+G++EILK ELL +L+GLQ W +G R+++V +DS + LSL++ G RFH YAAIV
Sbjct: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
Query: 1541 GAIRELLRRDWRVELKHMLREGNVVAD 1567
G I +LLR DW+V + +LREGN V D
Sbjct: 275 GMIHDLLRFDWQVNFRLILREGNAVVD 195
>BP085058
Length = 452
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/115 (42%), Positives = 69/115 (59%)
Frame = +2
Query: 1022 VTSIPFTANLERYLGFPIFQGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVL 1081
+TSIPFT N+ +Y+ FPI QG +E F F LDRV + A K LLNK + L K VL
Sbjct: 101 ITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAKPVL 280
Query: 1082 NAIPVYPMQLFWFH*AVCDHLDSLAKNFIWSRGERRGMNMVAWRTVTLPKCNGGL 1136
+AI +Y MQL W ++CD + ++ ++F+W G+ +VAW T+ K GL
Sbjct: 281 SAISMYVMQLNWLPQSICDQICTVVRHFVWE--NVNGIPLVAWETIQSRKSMVGL 439
>AV780705
Length = 524
Score = 82.8 bits (203), Expect = 4e-16
Identities = 50/141 (35%), Positives = 71/141 (49%), Gaps = 2/141 (1%)
Frame = -2
Query: 1034 YLGFPIFQGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFW 1093
YLG P GR ++ ++V K WK LLN+AGK +L K ++ AIP Y M +
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305
Query: 1094 FH*AVCDHLDSLAKNFIW-SRGERRGMNMVAWRTV-TLPKCNGGLGIRKARLINTSMLGK 1151
F C+ L +L +F W S+GE A T L K GG+G R R N + L +
Sbjct: 304 FPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLAFLAR 125
Query: 1152 LVWDLVNSHDKLWV*VLLDLY 1172
W ++ + + LWV V+ LY
Sbjct: 124 QAWRVLTNPEALWVRVMKSLY 62
>BP069214
Length = 545
Score = 77.8 bits (190), Expect = 1e-14
Identities = 39/79 (49%), Positives = 51/79 (64%)
Frame = -2
Query: 1489 EILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTRFHVYAAIVGAIRELLR 1548
EI ELLA+ GL WDRGFRQ++ SDS L+L+ H YAA++ +I++LL
Sbjct: 409 EITNMELLAMWHGLDLVWDRGFRQVICQSDSTEALALVLGVPPPRHRYAALIWSIKDLLS 230
Query: 1549 RDWRVELKHMLREGNVVAD 1567
R+W V + HMLREGN AD
Sbjct: 229 REWEVSMTHMLREGNSCAD 173
>TC19596
Length = 499
Score = 71.6 bits (174), Expect = 9e-13
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 1460 DPGRAEVGGVVRDAVGCWLFG-YSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSD 1518
D R +GG+VRDA G W+ G Y+G +G + L+AE+ A+ GL W+ R+ D
Sbjct: 34 DDDRMGMGGIVRDAHGAWISGFYAGSLG-GDALRAEIAALKHGLTLLWNAHVRRATCEVD 210
Query: 1519 SMVVLSLLRHGVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
+ ++ L + +FH A+ + IR LL RDW V L ++ RE N AD
Sbjct: 211 CLDIVEALENDRYQFHALASELLDIRLLLDRDWTVTLAYVPREANAAAD 357
>BP060613
Length = 378
Score = 69.3 bits (168), Expect = 4e-12
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Frame = +1
Query: 1111 WSRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHDKLWV*VLLD 1170
WS RG++ W +T K GGLG + + N ++L K W ++++ D LWV +L
Sbjct: 49 WSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILKA 228
Query: 1171 LYCTNSDFLHAPRRRG-SCVWNAVMKTRDIIQDGFTWRIGRGD 1212
LY + DFL +R G S VW++++ R+++ W++G G+
Sbjct: 229 LYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGE 357
>AV767121
Length = 525
Score = 58.9 bits (141), Expect = 6e-09
Identities = 50/176 (28%), Positives = 71/176 (39%), Gaps = 10/176 (5%)
Frame = +2
Query: 1061 ASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHLDSLAKNFIWSRGERRGMN 1120
+ WK + ++ G+ L + VL A+P++ + F V L +NF+W E
Sbjct: 5 SKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENKI 184
Query: 1121 M-VAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHDKLWV*VL---LDLYCTNS 1176
V W V PK GGLGI+ N ++LGK W + D LW V+ D Y
Sbjct: 185 A*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSC-- 358
Query: 1177 DFLHAPRRRGSCVWNAVMKTRDIIQDGF-----TWRIGRGD-LSFWFSKCHGSKAL 1226
GS WN ++ DG+ +G GD FW GS L
Sbjct: 359 ---------GSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLL 499
>CN825238
Length = 692
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/85 (31%), Positives = 41/85 (47%), Gaps = 5/85 (5%)
Frame = +3
Query: 1284 VWAPSLEGKYSVQSCYRWL-----LDMEGGTAVSVDWA*LWKFQVPEKMKLFAWQAAHRS 1338
+W S G +SV+S Y + + A S W LW+ VP KMK FA++ A
Sbjct: 417 LWRWSRNGAFSVRSAYYNIQVAKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAYRVARNI 596
Query: 1339 LPTVDTFHDRGVAIPRWCSLCHHHV 1363
+P + RG+A+ C C+H +
Sbjct: 597 IPCRENLQRRGIAVQNECPTCNHQI 671
>AV411435
Length = 426
Score = 54.3 bits (129), Expect = 1e-07
Identities = 40/147 (27%), Positives = 62/147 (41%), Gaps = 9/147 (6%)
Frame = +3
Query: 1280 EDLVVWAPSLEGKYSVQSCYRWL---------LDMEGGTAVSVDWA*LWKFQVPEKMKLF 1330
ED + W G+YSV+S YR + L S W +W QVP+K++ F
Sbjct: 36 EDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSF 215
Query: 1331 AWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLCVSLTPG 1390
W+AA+ ++P R + +C +C+ E H L C+ + VW
Sbjct: 216 LWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW---------- 365
Query: 1391 FFTASSFLDWIASVPRHDVAGLLVHAW 1417
F +F+ H+V G+L AW
Sbjct: 366 FGCPLNFV-------VHEVHGMLFGAW 425
>BP076564
Length = 371
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +2
Query: 1322 QVPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQ 1381
+V EK K H++LP H +A C C V+ +HCL+DC S +VW
Sbjct: 59 KVVEKCKFMVGLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWN 238
Query: 1382 NLCVSLTPGFFTASSFLDWIASVPRH-DVAGLLVHAWFIW 1420
L S GF ++ + W+ S+ + +V L+ W+IW
Sbjct: 239 RLGCSSFGGFLSSDGW-SWLLSIMKQPNVEKLIYILWWIW 355
>AV780221
Length = 461
Score = 52.8 bits (125), Expect = 4e-07
Identities = 36/102 (35%), Positives = 48/102 (46%), Gaps = 7/102 (6%)
Frame = +3
Query: 1122 VAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHDKLWV*VLLDLYCTNSDFLHA 1181
V W TV PK GGLG++ L N ++LGK W ++ D LW VLL Y +A
Sbjct: 153 VKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY------KNA 314
Query: 1182 PRRRGSCVWNAVMKT------RDIIQDGFTWRIGRG-DLSFW 1216
+ S WN + T +Q G RIG G ++ FW
Sbjct: 315 IPQSASSWWNDLHSTCFEDGGGGWMQRGLCRRIGEGTEVKFW 440
>AV407204
Length = 432
Score = 52.0 bits (123), Expect = 7e-07
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -2
Query: 1493 AELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLRH-GVTRFHVYAAIVGAIRELLRRDW 1551
AE LA+ GL+ WD G R+LV +SD ++ + FH + ++ I L+ R+W
Sbjct: 374 AEALALRDGLRLAWDNGTRKLVCNSDCKELIDAIADPSRASFHAHGWVLREIHALMTRNW 195
Query: 1552 RVELKHMLREGNVVAD 1567
RVEL R+ N+VAD
Sbjct: 194 RVELFWCCRDVNMVAD 147
>TC11323
Length = 657
Score = 50.4 bits (119), Expect = 2e-06
Identities = 25/66 (37%), Positives = 41/66 (61%)
Frame = +2
Query: 1462 GRAEVGGVVRDAVGCWLFGYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMV 1521
G A GG++RD ++FG+S F+ +A+I+K L A+L GL C G+ + + DS +
Sbjct: 68 GNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILEGLLVCKPLGYDGIGIECDSNI 247
Query: 1522 VLSLLR 1527
V+S +R
Sbjct: 248 VVSWIR 265
>BP043532
Length = 465
Score = 48.9 bits (115), Expect = 6e-06
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = -2
Query: 1485 IGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTRFHVYAAIVGAIR 1544
+G+ IL AEL ++ GL+ RGF ++++ +DS + L G H +V
Sbjct: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
Query: 1545 ELLRRDWRVELKHMLREGNVVAD 1567
L+ ++ + KH+ RE N VAD
Sbjct: 284 HLVGQNCYIHWKHVYREVNFVAD 216
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/122 (29%), Positives = 53/122 (42%)
Frame = -3
Query: 960 ISHLFFADDVLLLAKAKVSQVRKVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADI 1019
ISHL FAD++++ + + + + N+L F SGL N AKS F + V K I
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVF--ILVKETTKNQI 200
Query: 1020 FVVTSIPFTANLERYLGFPIFQGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKL 1079
+ R LG P + ++DR K W GR L+ AG+ L
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 1080 VL 1081
+L
Sbjct: 19 IL 14
>BP056414
Length = 606
Score = 47.0 bits (110), Expect = 2e-05
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Frame = -3
Query: 1463 RAEVGGVVRDAVGCWLFGYSGFIGMAEILKA---ELLAVLFGLQSCWDRGFRQLVVSSDS 1519
+A GGVVRDA G W G++ +G+ A EL+AV + Q+++ SDS
Sbjct: 499 QASCGGVVRDAAGSWSKGFARSLGVLRWHXAFFVELMAVQTAVDFIMSWDIPQVIIESDS 320
Query: 1520 MVVLSLLRH-GVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
V+ LL++ + H Y I I++ + + + RE N +AD
Sbjct: 319 QQVVELLQNFNASSPHQYGEIAWDIQQKISVHGSIVITSTPREANFLAD 173
>BE122611
Length = 357
Score = 44.7 bits (104), Expect = 1e-04
Identities = 21/61 (34%), Positives = 33/61 (53%)
Frame = -3
Query: 1281 DLVVWAPSLEGKYSVQSCYRWLLDMEGGTAVSVDWA*LWKFQVPEKMKLFAWQAAHRSLP 1340
D ++W G YS +S Y L++ +GG S W+ +WK PEK++ F W +LP
Sbjct: 331 DRILWTEESNGCYSAKSTYNLLIE-DGGNE-SRFWSLVWKANAPEKVRFFLWLVGRNALP 158
Query: 1341 T 1341
+
Sbjct: 157 S 155
>BP068806
Length = 418
Score = 43.9 bits (102), Expect = 2e-04
Identities = 30/87 (34%), Positives = 42/87 (47%), Gaps = 5/87 (5%)
Frame = +3
Query: 1322 QVPEKMKLFAWQAAHRSLPTVDTFHDR-----GVAIPRWCSLCHHHVET*MHCLRDCDAS 1376
+VPEK++++ W ++ V++F R A PR C H E HCLRDC +
Sbjct: 147 EVPEKIRVWVWFIMQGAIQ-VNSFRFRCKLATSPAGPR----CQHQFEDIWHCLRDCRIA 311
Query: 1377 LQVWQNLCVSLTPGFFTASSFLDWIAS 1403
VW L PGFF S+ W+ S
Sbjct: 312 RDVWVRLNALGWPGFF-VSNAQAWVKS 389
>BP080173
Length = 382
Score = 43.9 bits (102), Expect = 2e-04
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = -2
Query: 1464 AEVGGVVRDAVGCWLFGYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVL 1523
A GGV+ D G ++ G S +G I AEL + G + RGF++++V SDS V+
Sbjct: 276 AACGGVMWDHEGTFITGASVRLGCYFINHAELWGIFHGAKIAQARGFKKILVESDSSFVV 97
Query: 1524 SLLRHGVTRFHVYAAIVGAIREL 1546
SL+ G + +V I+ L
Sbjct: 96 SLVNQGCSPSKPATPLVKDIKSL 28
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.338 0.147 0.507
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,173,558
Number of Sequences: 28460
Number of extensions: 593472
Number of successful extensions: 4560
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 4436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4553
length of query: 1569
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1467
effective length of database: 1,994,680
effective search space: 2926195560
effective search space used: 2926195560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0022.23