TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0022.15
         (313 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP033552                                                               94  3e-20
CB828260                                                               79  1e-15
AV769506                                                               62  1e-10
NP459593 Pge1 protein [Lotus japonicus]                                60  6e-10
BP033724                                                               49  8e-07
BP033653                                                               36  0.007
TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partia...    32  0.18
BP031847                                                               28  2.0
AV777541                                                               27  3.4
TC14403 homologue to UP|Q8LJR4 (Q8LJR4) Syntaxin, partial (38%)        27  3.4
AV779196                                                               27  4.5
TC12143                                                                27  4.5
TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloro...    26  7.6
TC16653 similar to UP|Q8W1A1 (Q8W1A1) Adenosine 5'-phosphosulfat...    26  9.9
TC14250 homologue to UP|Q8GTQ9 (Q8GTQ9) Succinyl-CoA ligase alph...    26  9.9
TC8539 similar to UP|Q94KE3 (Q94KE3) AT3g52990/F8J2_160 (Pyruvat...    26  9.9
AV780782                                                               26  9.9

>BP033552 
          Length = 505

 Score = 94.0 bits (232), Expect = 3e-20
 Identities = 59/112 (52%), Positives = 66/112 (58%), Gaps = 22/112 (19%)
 Frame = +1

Query: 48  SSPLLLLKLTGDGKMRENENFAILIFPAPSSVNSKIGFGDRIPKLKRGFLEL-------- 99
           S  L+     G GK R+N+ FAI IFPA SS +SKIG GDRIP+LK GFLEL        
Sbjct: 97  SKNLIFELFIGFGKKRKNDFFAIPIFPARSSAHSKIGSGDRIPELKTGFLELNQKIQNRH 276

Query: 100 --------------SGCRKRKLPSEERLETSREMGVRVWNLHLKLRIEKVFI 137
                         S  R RKLPSEERL   RE+G R WNL L+LRIEKVFI
Sbjct: 277 KSV*VGLSRKTTFCSDRRMRKLPSEERLGMMREIGERGWNLLLQLRIEKVFI 432


>CB828260 
          Length = 557

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
 Frame = +3

Query: 198 SDNGGL-KRKTFMILGCERCDKYIPYKEVLKHQSTGTKKCYCPFRLRAR----GTKVGWK 252
           SD+GG   RK +++LGCE+  KY+PY++    + T T+K  CPFRL+ R    GT   W+
Sbjct: 150 SDSGGNGSRKAYVMLGCEKHGKYVPYRDPDLVEGTRTQKTECPFRLKGRPMKNGTDRDWR 329

Query: 253 VSVMNGYHIHERSETLLGHPYVGR 276
           + VM G H HE + +LLGH +VGR
Sbjct: 330 LKVMEGAHNHEPARSLLGHNFVGR 401


>AV769506 
          Length = 345

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
 Frame = +1

Query: 170 KVFASRDEILEWARNLGKQHGFIIVITRSDNGGLK-RKTFMILGCERCDKYIPYK----- 223
           ++F +RD+++ W   +  ++G++ +IT+SD GG + RK +++LGCE+  KY+PY+     
Sbjct: 37  QIFPTRDDLINWVHGIAIENGYVTLITKSDYGGNESRKAYVMLGCEKHGKYVPYRDPDLV 216

Query: 224 --EVLKHQSTGTKKCYCPFRLRARGTKVG---WKVSVMNGYH 260
             E    QST    C C      +G+K     W  S ++G H
Sbjct: 217 ADEDPSAQSTLEPACDCLNHHHKQGSKPSPQLWPPSTVDGPH 342


>NP459593 Pge1 protein [Lotus japonicus]
          Length = 633

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 23/50 (46%), Positives = 37/50 (74%)
 Frame = +1

Query: 170 KVFASRDEILEWARNLGKQHGFIIVITRSDNGGLKRKTFMILGCERCDKY 219
           + FAS  ++++WAR +GK++G+++++ RSD G  KRK  + LGCER  KY
Sbjct: 463 EAFASHTDLIDWARCVGKENGYVVIVIRSDYGSAKRKPLITLGCERGGKY 612


>BP033724 
          Length = 486

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +3

Query: 1  MNLRAKTTEFHHNQSETQHSILTKVTRSSIYSE 33
          +NL AKTTEF+HNQSETQ + +TKVTRS I SE
Sbjct: 60 LNL*AKTTEFNHNQSETQQTTITKVTRSIINSE 158


>BP033653 
          Length = 516

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 8/51 (15%)
 Frame = -2

Query: 13  NQSETQHSILTKVTRSSIYSE--------QLSEQRSSKKRRKSSSPLLLLK 55
           N+SETQH+I T+V+R+ I SE        Q+ E+R+     +SS PL +++
Sbjct: 515 NESETQHTISTRVSRNIINSEVRQSNALRQVFEKRNPPPLMRSSRPLFIIR 363


>TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partial (27%)
          Length = 997

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 22/64 (34%), Positives = 32/64 (49%)
 Frame = +3

Query: 27  RSSIYSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKMRENENFAILIFPAPSSVNSKIGFG 86
           RSS  S   S  RS ++RRK   P L  + +   +  E+ +F+I     PS + S   FG
Sbjct: 759 RSSSRSSSSSTHRSRRRRRKKPLPSLASRASPSSRFTESSSFSI-----PSGIASPGRFG 923

Query: 87  DRIP 90
            R+P
Sbjct: 924 -RLP 932


>BP031847 
          Length = 121

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 61 KMRENENFAILIFPAPSSV 79
          +M++NENFAI IFP  S+V
Sbjct: 25 EMQKNENFAIPIFPTDSNV 81


>AV777541 
          Length = 466

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/41 (41%), Positives = 21/41 (50%)
 Frame = +1

Query: 27  RSSIYSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKMRENEN 67
           R  IY EQ+ E+ +    R  SSPLL   L  DG+ R   N
Sbjct: 346 RRKIYLEQIRERANL---RDQSSPLLRRSLNKDGQGRSTPN 459


>TC14403 homologue to UP|Q8LJR4 (Q8LJR4) Syntaxin, partial (38%)
          Length = 727

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 21/90 (23%), Positives = 37/90 (40%)
 Frame = -3

Query: 39  RSSKKRRKSSSPLLLLKLTGDGKMRENENFAILIFPAPSSVNSKIGFGDRIPKLKRGFLE 98
           +S   + +S+ P+L+L L  +GK +   N+ ILI   P          + +    R  L 
Sbjct: 608 KSRSAQEESAQPILVLHLQVEGK*K---NYYILILKKPE---------ENLHHKSRHILR 465

Query: 99  LSGCRKRKLPSEERLETSREMGVRVWNLHL 128
                 R L    ++       +R+WN H+
Sbjct: 464 TPNTNSRTLTPHNKIT------IRLWNYHM 393


>AV779196 
          Length = 509

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 19  HSILTKVTRSSIYSEQLSEQRSSKK 43
           H +L+ VTR S++S   SEQR+S K
Sbjct: 390 HVLLSPVTRWSVFSS*PSEQRNSTK 316


>TC12143 
          Length = 428

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 3   LRAKTTEFHHNQSETQHSILTKVTRSSIYSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKM 62
           L +KT  ++H+  ETQ  + TK+ +  I   +  E R++    K S+ + L +   +   
Sbjct: 98  LVSKTNHYYHHTIETQIKL*TKIYQFFISGIKDRE*RNTMPEEKESTSIPLSQAEDNASC 277

Query: 63  RENENFAILIFPAPSSVNS 81
            + E+      PA S  NS
Sbjct: 278 DDPED------PAKSPPNS 316


>TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
           nucleoid DNA binding protein-like {Arabidopsis
           thaliana;} , partial (58%)
          Length = 2067

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 87  DRIPKL---KRGFLELSGCRKRKLPSEERLETSREMGVRVW 124
           ++IP++   +R   EL G R+R+     R + +RE+G R W
Sbjct: 229 EKIPQVECYRRELGELGGGRRRRRGRRWRTQKNRELGWRGW 107


>TC16653 similar to UP|Q8W1A1 (Q8W1A1) Adenosine 5'-phosphosulfate
           reductase, partial (69%)
          Length = 1242

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 76  PSSVNSKIGFGDRIPKLK 93
           P ++N K+G G R+PKL+
Sbjct: 929 PGNMNGKVGGGGRMPKLR 982


>TC14250 homologue to UP|Q8GTQ9 (Q8GTQ9) Succinyl-CoA ligase alpha subunit
           , partial (89%)
          Length = 1395

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 102 CRKRKLPSEERLETSREMGVRVWNLHLKLRI 132
           CR  ++  + +L+ SR++G ++W+  LKL +
Sbjct: 905 CRVARVLHKTKLKPSRKLGSQLWSPLLKLEL 997


>TC8539 similar to UP|Q94KE3 (Q94KE3) AT3g52990/F8J2_160 (Pyruvate
           kinase-like protein), partial (81%)
          Length = 1430

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 25/99 (25%), Positives = 42/99 (42%)
 Frame = +2

Query: 6   KTTEFHHNQSETQHSILTKVTRSSIYSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKMREN 65
           KT +  H+ S TQH+   +     ++    + +R ++     SS LLL +      + E 
Sbjct: 23  KTRDTAHSLSTTQHATTLQPPPP*LFLSDSAARRRAQPNTMPSSHLLLEEPIRMASILEP 202

Query: 66  ENFAILIFPAPSSVNSKIGFGDRIPKLKRGFLELSGCRK 104
              +   FPA + +   +G     PK  R    +SGC K
Sbjct: 203 SKAS--FFPAMTKIVGTLG-----PK-SRSIEAISGCLK 295


>AV780782 
          Length = 511

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 174 SRDEILEWARNLGKQHGFIIVITRSDNGGLKRKTFMILGCERCDK 218
           SR  I+ WA +LG ++ +  +   S+  G   K   +LGC+ C +
Sbjct: 387 SRGGIIFWADSLGSEYIYSRLEKWSELYGEFFKPCALLGCKSCQR 253


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,625,101
Number of Sequences: 28460
Number of extensions: 76702
Number of successful extensions: 418
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of query: 313
length of database: 4,897,600
effective HSP length: 90
effective length of query: 223
effective length of database: 2,336,200
effective search space: 520972600
effective search space used: 520972600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)