TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0020.10
         (535 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18687 similar to UP|Q9LWT7 (Q9LWT7) ESTs AU082452(S2330), part...   276  8e-75
TC15061                                                               157  5e-39
TC14691                                                                28  2.8
CB827863                                                               28  3.7
AW720427                                                               28  4.9
TC11306 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation fact...    28  4.9
TC16073 similar to UP|Q9FJN9 (Q9FJN9) Poly(A)-binding protein II...    28  4.9
TC18893                                                                27  6.3
TC8771 homologue to UP|Q39862 (Q39862) Homeobox-leucine zipper p...    27  6.3
TC12193                                                                27  8.3
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-...    27  8.3
AV771920                                                               27  8.3

>TC18687 similar to UP|Q9LWT7 (Q9LWT7) ESTs AU082452(S2330), partial (3%)
          Length = 415

 Score =  276 bits (705), Expect = 8e-75
 Identities = 138/138 (100%), Positives = 138/138 (100%)
 Frame = +2

Query: 252 GSALISAFTYHMIRELNVNEPDIMSLWIVSIFSGLIWLVGIFHVATAIGRTTDEISFSSR 311
           GSALISAFTYHMIRELNVNEPDIMSLWIVSIFSGLIWLVGIFHVATAIGRTTDEISFSSR
Sbjct: 2   GSALISAFTYHMIRELNVNEPDIMSLWIVSIFSGLIWLVGIFHVATAIGRTTDEISFSSR 181

Query: 312 LHPFSVFKYPHAIGALASVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPV 371
           LHPFSVFKYPHAIGALASVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPV
Sbjct: 182 LHPFSVFKYPHAIGALASVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPV 361

Query: 372 FSLSLLQPLLRVIKMNSV 389
           FSLSLLQPLLRVIKMNSV
Sbjct: 362 FSLSLLQPLLRVIKMNSV 415


>TC15061 
          Length = 625

 Score =  157 bits (396), Expect = 5e-39
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +1

Query: 457 YAWMRSAGLLVGFTVGSVSPGNIRTSFGAAFCTAIAGIVVLLFGNISDVGGAVAAGHVRD 516
           YAWMRSAGLLVGFTVGSVSPGNIRTSFGAAFCTAIAGIVVLLFGNISDVGGAVAAGHVRD
Sbjct: 1   YAWMRSAGLLVGFTVGSVSPGNIRTSFGAAFCTAIAGIVVLLFGNISDVGGAVAAGHVRD 180

Query: 517 DSERSSAVAGLDTKESVHV 535
           DSERSSAVAGLDTKESVHV
Sbjct: 181 DSERSSAVAGLDTKESVHV 237


>TC14691 
          Length = 1255

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 463 AGLLVGFTVGSVSPGNIRTSFGAAFCTAI-AGIVVLLFGNISDVG 506
           A  ++G+ VGS  P N++  F    C A+ A +    FG  S  G
Sbjct: 866 AATVLGYMVGSGLPSNVKKVFHPIICCALSADLTAFAFGYFSKSG 1000


>CB827863 
          Length = 571

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 330 VFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPVFSLS--LLQPLLRVIKMN 387
           +FI+SF+T   F   + F + ++ IK   L FF    F+F   + S  LLQ  +++I  N
Sbjct: 569 IFINSFLTDGSFNLLLCFNIKRISIKKSKLFFFLTPIFIFLAMTQS*NLLQS-IQIIP*N 393

Query: 388 SV 389
           S+
Sbjct: 392 SL 387


>AW720427 
          Length = 548

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 25/76 (32%), Positives = 32/76 (41%), Gaps = 9/76 (11%)
 Frame = +3

Query: 56  VGEKPSRFEVMGWY-------LYEFCSYFIQTVLIPVVFPLIISQL--QNLPADWAKNNR 106
           VG +   FE+  W        L E    F+Q    P  FP ++  L  QNLPAD A+   
Sbjct: 9   VGGRVGDFEIHSWMIDLVV*VLSEN*EIFLQLATTP--FPSMVKGLHSQNLPADVAQVVD 182

Query: 107 PAGTHCSQKELHLYSK 122
               HC   +  L SK
Sbjct: 183 QLERHCLAPDGSLMSK 230


>TC11306 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation factor 4,
           eIF4-like protein, partial (6%)
          Length = 550

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (54%)
 Frame = +2

Query: 7   EAEGGGHHQGGAQGGAPENGKGTTATRPDLHNRAMKIL 44
           E E  G  +GG + G+ E+G  TTA RP   N  + +L
Sbjct: 158 EREISGGSRGGIESGSEESGSTTTA-RPQAENGLITLL 268


>TC16073 similar to UP|Q9FJN9 (Q9FJN9) Poly(A)-binding protein II-like,
           partial (59%)
          Length = 529

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 25/72 (34%), Positives = 37/72 (50%), Gaps = 6/72 (8%)
 Frame = -2

Query: 372 FSLSLLQPLLRVIKMNSVKMQIVGFLFSLISSGFGFYYG-HSHWKWGH-----LVVFSVI 425
           F L LLQPLL V++   V + ++G    ++  G G   G H H   G+     LV+F V 
Sbjct: 222 FFLDLLQPLLHVLQ---VLVWVIGGEIVVLLFGVGVGVGVHLHLLIGNVGAVDLVLFLVH 52

Query: 426 QSTGTGILHAFS 437
            S  + +L +FS
Sbjct: 51  HSLLSAMLSSFS 16


>TC18893 
          Length = 455

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
 Frame = -1

Query: 353 CIKPVHLLFFWLTYFLFPVFSLSLL-QPLLRVIKMNSVKMQIVGFLFSLISSGFG 406
           C+  +   F WLT  +F +FSL ++ +P +  I++      I   L   +S  +G
Sbjct: 266 CLPTIRT*FLWLTLLIFIIFSLQIISKPCIIFIQVGI*LTDIAVILLCSLSGIWG 102


>TC8771 homologue to UP|Q39862 (Q39862) Homeobox-leucine zipper protein,
          partial (20%)
          Length = 953

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
 Frame = +3

Query: 24 ENGKGTTATR----------PDLHNRAMKILRAR--EAYNG-------YEEVGEKPSRFE 64
          E G G  +T+          P  H+  + ILRAR   A  G          VG   SR  
Sbjct: 21 EGGSGAQSTQAFPAVLHADDPTDHSHHVPILRARGSSALRG*SIHAPPSSHVGS**SRAS 200

Query: 65 VMGWYLYEFCSYFIQTV 81
          ++GW +   CS+F Q V
Sbjct: 201LLGWRVGLHCSHFTQAV 251


>TC12193 
          Length = 395

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 423 SVIQSTGTGILHAFSRVLVLDCAPSGKEG--AFSIWYAWMRSAGLLVGFTV 471
           S+IQS  + I+H  S  + ++C  S       F IW  W+ S   L G+TV
Sbjct: 59  SIIQSLSSVIVHLISGFISVNCDHSQVSDLFPFPIW-IWIPSCVSLSGYTV 208


>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
            protein, partial (97%)
          Length = 2230

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 4/49 (8%)
 Frame = +1

Query: 348  IVGQLCIKPVHLLFFWL----TYFLFPVFSLSLLQPLLRVIKMNSVKMQ 392
            I G L I   +L FF+       F+F +FSL LL+  +  +K N VK++
Sbjct: 1429 ITGNL*INWFNLPFFFF*WEGVLFIFFLFSLLLLEFFMEGVKKNLVKVK 1575


>AV771920 
          Length = 477

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 368 LFPVFSLSLLQPLLRVIKMNSVKMQIVGFLFSLISSGFGF 407
           +F  F+L L   LLR I+     +++ G LF  + SGFGF
Sbjct: 121 IFCSFALFLHD*LLR*IEDG*RNLKLWGALFDYLDSGFGF 2


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,504,882
Number of Sequences: 28460
Number of extensions: 164891
Number of successful extensions: 1354
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of query: 535
length of database: 4,897,600
effective HSP length: 95
effective length of query: 440
effective length of database: 2,193,900
effective search space: 965316000
effective search space used: 965316000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)