BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019b.10
(251 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038715 60 5e-10
AU251801 35 0.012
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 33 0.047
TC14933 homologue to UP|TCMO_GLYEC (Q96423) Trans-cinnamate 4-mo... 31 0.18
AV416351 31 0.23
TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Ara... 31 0.23
TC17986 similar to GB|AAP21231.1|30102626|BT006423 At4g14465 {Ar... 31 0.23
BP067321 30 0.30
TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase , complete 29 0.67
AV766128 29 0.88
BP081200 29 0.88
TC18947 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/d... 29 0.88
TC12057 weakly similar to UP|Q9STU0 (Q9STU0) ABC-type transport-... 29 0.88
BP055526 28 1.1
TC9363 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import in... 28 1.5
BP051954 28 1.5
AV415462 28 2.0
TC11163 similar to UP|Q94AX4 (Q94AX4) AT5g06580/F15M7_11, partia... 28 2.0
TC15531 28 2.0
TC14816 27 2.6
>BP038715
Length = 530
Score = 59.7 bits (143), Expect = 5e-10
Identities = 34/69 (49%), Positives = 41/69 (59%)
Frame = +2
Query: 183 ASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKG 242
+SP RN PE Q P+ V S P TP+V + TNSS+KS+QRGRPKG
Sbjct: 35 SSPMCDTRN---PEGRQHQFTPVG-----VESASPTTPSVVTTPQTNSSQKSAQRGRPKG 190
Query: 243 SKNKPQPHP 251
SKNKP+P P
Sbjct: 191 SKNKPKPLP 217
>AU251801
Length = 318
Score = 35.0 bits (79), Expect = 0.012
Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 10/64 (15%)
Frame = +2
Query: 182 RASPSATV---RNASSPETSSQQCFPLTCS-------PGHVASVEPVTPAVKKSSNTNSS 231
R++P+AT R ++ + S+Q+C+ TC+ P V P TPA K ++ S+
Sbjct: 86 RSAPAATATAARASTQNQASAQRCYSPTCTSVRTSSPPASTPRVSPSTPARSKPTSMTST 265
Query: 232 KKSS 235
K SS
Sbjct: 266 KTSS 277
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 33.1 bits (74), Expect = 0.047
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = -2
Query: 144 QQNRLSGFATTSATSPTSELRE--ITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQ 201
Q RL G +++S S S E ++++F+ SPS+ + SSP +SS
Sbjct: 459 QPYRLEGLSSSSPPSSESSSPEPSLSDLFLFDGTPAF-----SPSSL--SLSSPSSSSGS 301
Query: 202 CFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQPHP 251
S A+V +V KSS+++SS SS S + P P P
Sbjct: 300 KSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSSSSGSPPPPRP 151
>TC14933 homologue to UP|TCMO_GLYEC (Q96423) Trans-cinnamate 4-monooxygenase
(Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H)
(Cytochrome P450 73) , partial (57%)
Length = 917
Score = 31.2 bits (69), Expect = 0.18
Identities = 30/109 (27%), Positives = 45/109 (40%), Gaps = 4/109 (3%)
Frame = +2
Query: 145 QNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFP 204
QN + ++++ S TS L N ++S H++ T + SSPE C P
Sbjct: 242 QNASATSSSSAWGSATSSLSHPLNSPRKSSTHRVSNS-GPERVTSSSTSSPEKDKTWCSP 418
Query: 205 LTCSPGH--VASVEPVTPAVKKSSNTNSSKKSSQR--GRPKGSKNKPQP 249
T S G S + K SSNT + + +R R + KP P
Sbjct: 419 STASTGGRCGGS*RCRSSQTKSSSNTGQAGRQRRRAWSRMLNAAQKPPP 565
>AV416351
Length = 428
Score = 30.8 bits (68), Expect = 0.23
Identities = 17/67 (25%), Positives = 31/67 (45%)
Frame = +3
Query: 154 TSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVA 213
+S++SP + I +V +PHQ + + N+ + S++ PLT P +
Sbjct: 123 SSSSSPEKKNSPINHVLPSPTPHQSPKTIRQSDLSPMNSPKSKLSARPPSPLTLPPSQLK 302
Query: 214 SVEPVTP 220
+ EP P
Sbjct: 303 TEEPNVP 323
>TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;}, partial (25%)
Length = 856
Score = 30.8 bits (68), Expect = 0.23
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +2
Query: 149 SGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCS 208
S A T+ +SPTS ++ T Q + PSAT+ SSP ++S S
Sbjct: 185 SSHAPTTTSSPTSAATPRSSPSTGTPSSQRSSPSSPPSATLHRKSSPSSTS--------S 340
Query: 209 PGHVASVEPVTPAVKKSS 226
P +++ +P SS
Sbjct: 341 PARISTPSSPSPTTTTSS 394
>TC17986 similar to GB|AAP21231.1|30102626|BT006423 At4g14465 {Arabidopsis
thaliana;}, partial (49%)
Length = 628
Score = 30.8 bits (68), Expect = 0.23
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 236 QRGRPKGSKNKPQP 249
QRGRP GSKNKP+P
Sbjct: 271 QRGRPPGSKNKPKP 312
>BP067321
Length = 513
Score = 30.4 bits (67), Expect = 0.30
Identities = 33/112 (29%), Positives = 44/112 (38%), Gaps = 9/112 (8%)
Frame = +1
Query: 139 PFL---TSQQNRLSGFATTSATSPTSELR---EITNVFVRTSP---HQIIRQRASPSATV 189
PFL TS L TS P LR + N ++ +P H R RAS + T+
Sbjct: 31 PFLEGGTSSPPYLQRHHPTSPPPPPPPLRRQSQSPNTHLQKNPKTRHHYRRTRASSTTTI 210
Query: 190 RNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPK 241
+ SSP ++ P S PA + SS S SS RP+
Sbjct: 211 PSTSSPWNAAASSRQTATGP*SSGS-----PACRTSSPAPPSSSSSATRRPR 351
>TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase , complete
Length = 1522
Score = 29.3 bits (64), Expect = 0.67
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Frame = +3
Query: 121 LNLDPRILTQTNGI--GACLPFLTSQQNRLSG--------FATTSATSPTSELREITN-- 168
++L+P +LT I ACL S + SG +T S+ +PTS +
Sbjct: 210 ISLNPSLLTNQTWILHSACLILG*SWNSWTSGSPSSPPFSLSTPSSATPTSPSSAPSPH* 389
Query: 169 VFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASV-EPVTPAVK---- 223
T+P ++ + + PSA+ R A S T + P + P AS +P+TP +
Sbjct: 390 APASTAPAKLRSKSSCPSASHRTALSTPTRANPS-PTSSMPQPSASTSQPMTPCTRLTRY 566
Query: 224 KSSNTNSSKKSS 235
KS N+S S+
Sbjct: 567 KSGTRNASCSSA 602
>AV766128
Length = 382
Score = 28.9 bits (63), Expect = 0.88
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 13/69 (18%)
Frame = +3
Query: 193 SSPETSSQQCFPLTCSPGHVASVEP-------VTPAVKKSSNT------NSSKKSSQRGR 239
++P TSS++C+P+T SP + P VT ++ S+ +S+R
Sbjct: 84 ATPSTSSRRCWPVTSSPTRCSDRTPPHHTGVVVTQGEEQQHQAGEETLLKSAASTSRRVP 263
Query: 240 PKGSKNKPQ 248
S NKPQ
Sbjct: 264 TATSNNKPQ 290
>BP081200
Length = 427
Score = 28.9 bits (63), Expect = 0.88
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = +1
Query: 237 RGRPKGSKNKPQP 249
RGRP GSKNKP+P
Sbjct: 166 RGRPPGSKNKPKP 204
>TC18947 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
{Arabidopsis thaliana;}, partial (25%)
Length = 435
Score = 28.9 bits (63), Expect = 0.88
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = +3
Query: 237 RGRPKGSKNKPQP 249
RGRP GSKNKP+P
Sbjct: 246 RGRPPGSKNKPKP 284
>TC12057 weakly similar to UP|Q9STU0 (Q9STU0) ABC-type transport-like
protein, partial (3%)
Length = 554
Score = 28.9 bits (63), Expect = 0.88
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 26/130 (20%)
Frame = -3
Query: 148 LSGFATTSATSPTSELREITNVFVRTSP----HQIIRQRASPSATV------------RN 191
L GF T TSP+ + +N + T P H++ R S ++ +N
Sbjct: 513 LHGFQITVVTSPSKTFQFSSNGKLITVPLVYNHKLNRNFNS*FYSIYITFKSFSLTKQQN 334
Query: 192 ASSPETSSQQCFPLTCSPGHVASV-EPVTPAVKKSSNTN---------SSKKSSQRGRPK 241
Q FP C + + PA+ SN + SS SS K
Sbjct: 333 EHHHRRRHPQRFPPWCXQQYTGGLLRKNAPALHGWSNESDARCRYSHHSSSSSSYSRWTK 154
Query: 242 GSKNKPQPHP 251
SK KPQPHP
Sbjct: 153 QSKRKPQPHP 124
>BP055526
Length = 539
Score = 28.5 bits (62), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 102 SFNAQDLIQKSNNYWPFYSLNLDPRILTQTNGIGAC 137
SF+ QK+N +W F +N+DPR+ Q + C
Sbjct: 497 SFHRIPQTQKANVFWIFVLVNVDPRLAWQN*YLEIC 390
>TC9363 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import inner
membrane translocase subunit TIM17, partial (68%)
Length = 1085
Score = 28.1 bits (61), Expect = 1.5
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = +1
Query: 147 RLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLT 206
RL G A+S TS R + SP ATV +A ++S
Sbjct: 49 RLLGNRAPIASSTTSAARSAWARWAAPPSTSSKASTTSPKATVSSAPPKPSASTLLVSAE 228
Query: 207 CSPGHVASVEP-----VTPAVKKSSNTNSS 231
SP VAS P T A KK+ T SS
Sbjct: 229 ASPSGVASSPPSTAPWSTSARKKTPGTPSS 318
>BP051954
Length = 505
Score = 28.1 bits (61), Expect = 1.5
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 147 RLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLT 206
+LS A + A S S +R R P Q + QR A +A +C P
Sbjct: 197 QLSTPAASRAESKCSTVR------TRKPPLQRVVQRGETCANSTDAGIKLDRKSKCLPWP 36
Query: 207 CSPGHVASVE 216
+PGH +VE
Sbjct: 35 ANPGHNLTVE 6
>AV415462
Length = 418
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 148 LSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTC 207
LS + TS +SP S +++ P + SPS++ S+ TSS+ C +C
Sbjct: 19 LSSSSPTSWSSPASSTTSSSSLQASAPPRTLTPAP*SPSSSCPAVSTVSTSSKACPLDSC 198
Query: 208 S 208
S
Sbjct: 199 S 201
>TC11163 similar to UP|Q94AX4 (Q94AX4) AT5g06580/F15M7_11, partial (9%)
Length = 590
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
Frame = -2
Query: 189 VRNASSPETSSQQCF---PLTCSPGHVAS 214
VRNASSP +SS+ P C P HV S
Sbjct: 94 VRNASSPSSSSRYFIFPVPTPCXPVHVPS 8
>TC15531
Length = 795
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/69 (28%), Positives = 29/69 (41%), Gaps = 5/69 (7%)
Frame = -2
Query: 32 RRGKIQTLKAINSGEEQKEQLQVLIDSGYTSEE-----IEGWKNNLIVEGILFNENQIFD 86
RRG +Q LK GE+ + L + T E I+GWK +I +
Sbjct: 449 RRGNLQALKPPIKGEDSLDITMQLRNDHQTGAELGLTSIDGWK-------------EILE 309
Query: 87 NYVQNQGTR 95
N ++N G R
Sbjct: 308 NCIRNHGRR 282
>TC14816
Length = 952
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 204 PLTCSPGHVASVEPVTPAV--KKSSNTNSSKKSSQRGRPKGSKNKP 247
PLT + H+AS P P + ++S + +S S +G K P
Sbjct: 68 PLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNP 205
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,342,506
Number of Sequences: 28460
Number of extensions: 54788
Number of successful extensions: 486
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of query: 251
length of database: 4,897,600
effective HSP length: 88
effective length of query: 163
effective length of database: 2,393,120
effective search space: 390078560
effective search space used: 390078560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0019b.10