BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0018.1
(127 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15363 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4, ... 115 3e-51
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p... 37 0.001
TC8731 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (34%) 33 0.019
AW720220 33 0.019
BP079624 31 0.073
BP047377 30 0.095
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 30 0.12
TC15649 30 0.12
BP066300 29 0.28
BP036697 28 0.36
BI419822 28 0.47
TC9397 weakly similar to UP|Q7R479 (Q7R479) GLP_480_99804_101795... 28 0.47
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 28 0.62
TC17893 27 1.1
TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding prot... 27 1.1
AV778856 27 1.4
TC14076 homologue to UP|Q43414 (Q43414) Proline rich protein (Fr... 27 1.4
TC10057 similar to UP|Q41124 (Q41124) Chloroplast RNA binding pr... 27 1.4
TC12085 26 1.8
TC15154 similar to UP|Q9ASX9 (Q9ASX9) F1N18.24/F1N18.24, partial... 26 2.4
>TC15363 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4, partial
(79%)
Length = 1163
Score = 115 bits (289), Expect(2) = 3e-51
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +3
Query: 72 GALAGDIDVVCIGNLIVPLCELLNEQFVFYWSRSGNFFQYLCSPFRQNTPWLLRIL 127
GALAGDIDVVCIGNLIVPLCELLNE FVFYWSRSGNFF YLCSPFR NTPWLLRIL
Sbjct: 684 GALAGDIDVVCIGNLIVPLCELLNEPFVFYWSRSGNFFPYLCSPFRPNTPWLLRIL 851
Score = 100 bits (249), Expect(2) = 3e-51
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNAR 51
GYALIEYERAEEAKNAIENLNGSELLT NIYVDWAFS GPINESIRRKNAR
Sbjct: 508 GYALIEYERAEEAKNAIENLNGSELLTPNIYVDWAFSRGPINESIRRKNAR 660
>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(85%)
Length = 1917
Score = 36.6 bits (83), Expect = 0.001
Identities = 20/62 (32%), Positives = 31/62 (49%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIY 60
GY +++E E A+NAIE LNG L + +YV GP R+++ N++
Sbjct: 215 GYGFVQFETEEAAQNAIEKLNGMLLNDKQVYV------GPFLRKQERESSTDKAKFNNVF 376
Query: 61 FK 62
K
Sbjct: 377 VK 382
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/35 (28%), Positives = 19/35 (53%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
G + + EEA A+ +NG ++++ +YV A
Sbjct: 797 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLA 901
>TC8731 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (34%)
Length = 721
Score = 32.7 bits (73), Expect = 0.019
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = +2
Query: 2 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
Y I Y A AI LNG L Q I V+WA++SG
Sbjct: 398 YGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASG 511
>AW720220
Length = 535
Score = 32.7 bits (73), Expect = 0.019
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = +3
Query: 2 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
Y I Y A AI LNG L Q I V+WA++SG
Sbjct: 363 YGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASG 476
>BP079624
Length = 456
Score = 30.8 bits (68), Expect = 0.073
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = -1
Query: 41 INESIRRKNARHPVMNLNIYFKTGQLVIGAPGALAGDIDVVCIGNLIVPLCELLN----E 96
++ S R K A M+ + K +L++G L +D NL + + LN
Sbjct: 453 LSASCRIKLALSSCMSFVLAVKLNELIVGTSSQLISQLD-----NLSMLSAKELN*VQKR 289
Query: 97 QFVFYWSRSGNFFQYLCSPF 116
QF++ W+ S + + LC P+
Sbjct: 288 QFLYLWTMSFHLQEQLCLPY 229
>BP047377
Length = 564
Score = 30.4 bits (67), Expect = 0.095
Identities = 19/59 (32%), Positives = 29/59 (48%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNI 59
GY EY+ E A +A NL G E+ + + VD+A + N+ R + P M N+
Sbjct: 255 GYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA-ENDKGNDRNREQGRGGPGMTANV 428
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 30.0 bits (66), Expect = 0.12
Identities = 14/39 (35%), Positives = 24/39 (60%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + E ++AIE +NG+EL +NI V+ A + G
Sbjct: 208 GFGFVTFTSEEAMRSAIEGMNGNELDGRNITVNEAQARG 324
>TC15649
Length = 675
Score = 30.0 bits (66), Expect = 0.12
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GY I Y EEA+ AI L+G EL+ +++++
Sbjct: 140 GYGFISYLTKEEAEAAISALDGKELMGRSLFL 235
>BP066300
Length = 420
Score = 28.9 bits (63), Expect = 0.28
Identities = 14/47 (29%), Positives = 26/47 (54%)
Frame = -3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRR 47
G+A + Y EE++ AIE ++G L + I+V+ A + + +R
Sbjct: 307 GFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQR 167
>BP036697
Length = 578
Score = 28.5 bits (62), Expect = 0.36
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARH 52
GYA +E+E ++A++AI +G + + V+ A G N S R + + H
Sbjct: 213 GYAFVEFEDTQDAEDAIRGRDGYDFDGHRLRVELA-HGGRGNSSSRDRYSSH 365
>BI419822
Length = 380
Score = 28.1 bits (61), Expect = 0.47
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + + K+AIE +NG L +NI V+ A S G
Sbjct: 203 GFGFVTFASEQAMKDAIEAMNGQNLDGRNITVNEAQSRG 319
>TC9397 weakly similar to UP|Q7R479 (Q7R479) GLP_480_99804_101795, partial
(5%)
Length = 486
Score = 28.1 bits (61), Expect = 0.47
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNAR 51
G+A +EY +EA+NA+ L + L +++ ++ A + ++E R A+
Sbjct: 61 GFAFVEYGTQQEAQNALTGLLSTHLRGRSLVIERAKARESLDELRARTAAQ 213
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 27.7 bits (60), Expect = 0.62
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + + K+AIE +NG ++ +N+ V+ A + G
Sbjct: 482 GFGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEAQARG 598
>TC17893
Length = 516
Score = 26.9 bits (58), Expect = 1.1
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -3
Query: 39 GPINESIRRKNARHPVMNL 57
G +N S R N HPVMNL
Sbjct: 289 GTLNSSFRVSNIHHPVMNL 233
>TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
partial (46%)
Length = 1150
Score = 26.9 bits (58), Expect = 1.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNA 50
GY + + ++A+++I ++ G L + I +WA + G S KN+
Sbjct: 111 GYGFVSFRDHQDAQSSINDMTGKWLGNRQIRCNWA-TKGAGGSSSEEKNS 257
>AV778856
Length = 550
Score = 26.6 bits (57), Expect = 1.4
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNAR 51
G+A +EY +EA+NA+ L + +++ ++ A + ++E R AR
Sbjct: 318 GFAFVEYGTQQEAQNALTGLLSTHPPGRSLVIERAKARESLDELRARTAAR 166
>TC14076 homologue to UP|Q43414 (Q43414) Proline rich protein (Fragment),
partial (37%)
Length = 510
Score = 26.6 bits (57), Expect = 1.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 88 VPLCELLNEQFVFYWSRSGNFFQYLCSP 115
+P+ +LN + V++WS+ G C P
Sbjct: 226 LPIWRILNRRLVYWWSQLGACTPVACKP 143
>TC10057 similar to UP|Q41124 (Q41124) Chloroplast RNA binding protein
precursor, partial (49%)
Length = 598
Score = 26.6 bits (57), Expect = 1.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVD 33
G+A + E+ IENL+G E L + + V+
Sbjct: 440 GFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVN 538
>TC12085
Length = 668
Score = 26.2 bits (56), Expect = 1.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 65 QLVIGAPGALAGDIDVVCIGNLIVPLCELLNEQFVFYW 102
+L+IGA AL GD +VCI N C L + V++W
Sbjct: 445 RLIIGA--ALNGDSYLVCILNWWSVECCLTSRLLVWFW 552
>TC15154 similar to UP|Q9ASX9 (Q9ASX9) F1N18.24/F1N18.24, partial (15%)
Length = 615
Score = 25.8 bits (55), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2
Query: 83 IGNLIVPLCELLNEQFVFYWSRS 105
+GN + L + +N QF+F WS S
Sbjct: 335 VGNRVQLLLQQMNVQFLFSWSNS 267
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,258,131
Number of Sequences: 28460
Number of extensions: 29784
Number of successful extensions: 166
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of query: 127
length of database: 4,897,600
effective HSP length: 80
effective length of query: 47
effective length of database: 2,620,800
effective search space: 123177600
effective search space used: 123177600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0018.1