BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0017.9
(387 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19563 85 2e-17
AU089227 51 3e-07
TC9133 similar to GB|AAP37758.1|30725472|BT008399 At5g27630 {Ara... 38 0.002
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso... 36 0.012
TC7979 similar to UP|Q9SJM6 (Q9SJM6) At2g36320 protein (Zinc fin... 36 0.012
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ... 35 0.028
TC9443 similar to UP|Q84N37 (Q84N37) Potyvirus VPg interacting p... 34 0.047
AU251615 34 0.047
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , part... 33 0.062
AV417881 33 0.062
TC8030 33 0.080
TC19478 similar to UP|Q8L869 (Q8L869) RanGAP1 interacting protei... 33 0.080
BP036801 33 0.11
BP038264 33 0.11
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 32 0.14
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 32 0.18
TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (... 32 0.18
AV766217 31 0.31
TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported]... 31 0.40
BU494330 31 0.40
>TC19563
Length = 538
Score = 84.7 bits (208), Expect = 2e-17
Identities = 41/76 (53%), Positives = 62/76 (80%)
Frame = +3
Query: 312 ANTDREMESLREQLESEMESLAEKEQEVADIKKRIPEISDRLKELELKSAELEQSMLSSK 371
AN D EME LR++LESE E L ++E+EV+DIK +I +I + L ELE+K+++L++++LS K
Sbjct: 3 ANYDLEMEKLRKELESENEILVQEEKEVSDIKTKIEDIKEHLSELEVKASDLDKNLLSIK 182
Query: 372 SEVENLHRKSLIDELL 387
S+V+NL KSL+D+LL
Sbjct: 183 SQVQNLDSKSLLDDLL 230
>AU089227
Length = 447
Score = 51.2 bits (121), Expect = 3e-07
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +2
Query: 10 SNPNCPHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKKPGSRPEPPV 69
+N CP ASNPYH C C K S + + P F + K GS P PV
Sbjct: 236 TNSGCPKASNPYHVCGHTC-----------PKTMSGADSGVIPLKFGSKXKLGSXPXLPV 382
Query: 70 VAGAVPAAKVEAIQKSNASSPI 91
+ +P +K+ AI S+A+SPI
Sbjct: 383 LDN-IPXSKIGAIYLSDATSPI 445
>TC9133 similar to GB|AAP37758.1|30725472|BT008399 At5g27630 {Arabidopsis
thaliana;}, partial (16%)
Length = 677
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 306 EVDAAKANTDREMESLREQLESEMESLAEKEQEVADIKKRIPEISDRLKELEL---KSAE 362
E + ++ +E++S+R QL +E + E EVA++ +++ I KELEL + A
Sbjct: 58 EAEGRNSDLCKELQSVRGQLAAEQSRCFKLEVEVAELGQKLQTIGTLQKELELLQRQKAA 237
Query: 363 LEQSMLSSK 371
EQ+ LS+K
Sbjct: 238 SEQAALSAK 264
>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor (Atperox
P31) (ATP41) , partial (38%)
Length = 475
Score = 35.8 bits (81), Expect = 0.012
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 3 AASNGTASNPNC--PHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKK 60
A+S+ TAS P P +S+P T+ + TS P +TSSS PP ++
Sbjct: 217 ASSSTTASTPTAATPPSSSPQLPSTKPNATPTSTSPSPATPSTSSSELKPPSNSLAPTPS 396
Query: 61 PGSRPEPPVVAGAVPAA 77
P PP A + P +
Sbjct: 397 PAPTSSPPPPATS*PCS 447
>TC7979 similar to UP|Q9SJM6 (Q9SJM6) At2g36320 protein (Zinc finger-like
protein), partial (73%)
Length = 1262
Score = 35.8 bits (81), Expect = 0.012
Identities = 24/64 (37%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Frame = -1
Query: 5 SNGTASNPNC-PHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKKPGS 63
+N AS C PH ++P H CT R+ P A TS +G+A PP DRR +
Sbjct: 644 TNTRASPGTCGPHRTSP-HTCT*T-------RSAPRASGTSRTGSAEPPGESDRRLMRST 489
Query: 64 RPEP 67
R P
Sbjct: 488 RFPP 477
>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II , partial
(6%)
Length = 583
Score = 34.7 bits (78), Expect = 0.028
Identities = 27/85 (31%), Positives = 38/85 (43%), Gaps = 7/85 (8%)
Frame = -1
Query: 18 SNPYHQCTQACSKKTSHRTKPHAKN-------TSSSGAAPPPSNFDRRKKPGSRPEPPVV 70
S+P T A S S +T P + TSSS ++PPPS+ P P PP
Sbjct: 244 SSPSPSTTTASSASPSTKTLPSTRPRPASESPTSSSPSSPPPSSGSSVSPPRISPPPP-- 71
Query: 71 AGAVPAAKVEAIQKSNASSPISNHS 95
P+ A S+A++P S+ S
Sbjct: 70 ---PPSNSPTATPPSSATNPSSSSS 5
>TC9443 similar to UP|Q84N37 (Q84N37) Potyvirus VPg interacting protein
(Fragment), partial (41%)
Length = 1025
Score = 33.9 bits (76), Expect = 0.047
Identities = 32/104 (30%), Positives = 52/104 (49%), Gaps = 7/104 (6%)
Frame = +1
Query: 283 RVAWLRSALDEIAENVEVINQHQEVDAAKANTDREMESLREQLESEMESLAEKEQEVADI 342
RV + A + IAE V+ + E+ A + R + R L++ LA+K +EVA++
Sbjct: 76 RVVAPQDACNRIAEVVQEAIRKMEMVADEKM--RMFKKARLALDACDRELADKAREVAEL 249
Query: 343 KKRIPEISDRLKELE----LKSAELEQSML---SSKSEVENLHR 379
K + +++ELE LK+AE + L +K E E L R
Sbjct: 250 KMERQKKKSQVEELEKIVRLKNAEADMFQLKANEAKREAERLQR 381
>AU251615
Length = 350
Score = 33.9 bits (76), Expect = 0.047
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Frame = +3
Query: 300 VINQHQEVDAAKANTDREMESLREQLESEME-------SLAEKEQEVADIKKRIPEISDR 352
VIN Q A K+N ESLR+QLE + + A++EQE+A +K + ++ +
Sbjct: 18 VINYFQ---ALKSNE----ESLRDQLEKAKKKEAALIVTYAKREQEIAALKSAVRDLKAQ 176
Query: 353 LKELELKSAELEQSMLSSKSEVENLHRKSLIDE 385
LK +++ L +L E + K+L++E
Sbjct: 177 LKPASMQARRL---LLDPAVHEEFIRLKNLVEE 266
>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , partial (42%)
Length = 519
Score = 33.5 bits (75), Expect = 0.062
Identities = 25/107 (23%), Positives = 42/107 (38%), Gaps = 1/107 (0%)
Frame = +2
Query: 15 PHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPP-PSNFDRRKKPGSRPEPPVVAGA 73
P + +P+ + + S S + +T SS ++P PS + P P PPV A
Sbjct: 170 PPSDSPHRVGSSSESTSNSLASPSTTPSTPSSSSSPTSPSTTKQISTPSPSPPPPVATAA 349
Query: 74 VPAAKVEAIQKSNASSPISNHSEIKKVESRNDDHNHSVPVSGQIHVP 120
+ ++ +SSP + R H S P + +H P
Sbjct: 350 SSSKNSAEPRRFKSSSP--QNPTRNSHPYRISSHTDSPPTTSSLHAP 484
>AV417881
Length = 431
Score = 33.5 bits (75), Expect = 0.062
Identities = 25/94 (26%), Positives = 40/94 (41%), Gaps = 5/94 (5%)
Frame = +3
Query: 5 SNGTASNP----NCPHASNPYHQCTQACSKKT-SHRTKPHAKNTSSSGAAPPPSNFDRRK 59
S+G A +P + P +SNP+ T S + S +T +S + + PP
Sbjct: 30 SSGAAVHPTPSASTPQSSNPHKATTNPLSTPSPSSKTSEPTSASSPASSTPPSLPTSTAV 209
Query: 60 KPGSRPEPPVVAGAVPAAKVEAIQKSNASSPISN 93
P P P +P A A+ S++S P S+
Sbjct: 210 TPNGPPHSPDPGLLLPLAPSSALLASSSSGPPSS 311
>TC8030
Length = 991
Score = 33.1 bits (74), Expect = 0.080
Identities = 22/112 (19%), Positives = 41/112 (35%)
Frame = +1
Query: 58 RKKPGSRPEPPVVAGAVPAAKVEAIQKSNASSPISNHSEIKKVESRNDDHNHSVPVSGQI 117
+ P ++P PP + + A ++ + NH + S + + P S
Sbjct: 109 KPSPRAKPPPPRASSSHAHAATSMYPSQERATTMGNHRRLSPFRSLWPAASTTAPSSPSN 288
Query: 118 HVPLPVPDVKHVHEEDQQKNGVEHLANPIQTKQEDKTASDVHPGEGLATTFK 169
P P ++++K + HL+ PI + + H G L FK
Sbjct: 289 DHERPTPATTDAKNKEKRKP*IRHLSTPISGEPLSFWKNQHHHGTPLDVRFK 444
>TC19478 similar to UP|Q8L869 (Q8L869) RanGAP1 interacting protein, partial
(12%)
Length = 551
Score = 33.1 bits (74), Expect = 0.080
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 300 VINQHQEVDAAKANTDREMESLREQLESEMESLAE 334
V+N QE++ A+T +EMESLRE+L S SL E
Sbjct: 10 VLNSRQEMEKKMADTLKEMESLREKLGSLEFSLEE 114
>BP036801
Length = 540
Score = 32.7 bits (73), Expect = 0.11
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 18 SNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKKPGS---RPEPPVVAGAV 74
S P H A S T+ +KP A T+++ +AP P + GS R PP+
Sbjct: 320 SKPTHGAPPAPSPPTAPSSKPAASTTATTSSAPSPPAHNTTSATGSNSPRISPPL--AGT 493
Query: 75 PAAKVEAIQKSNAS 88
P K ++S++S
Sbjct: 494 PPTKSSPTEESSSS 535
Score = 29.6 bits (65), Expect = 0.89
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = +2
Query: 8 TASNPNCPHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKKPGS---- 63
+++ P H ++P A S + + A T SS +PP + KP
Sbjct: 170 SSTAPTSAHPTSP-SPTAAAASTPVTWPSSSTAPPTPSSTTSPPTLSALSPSKPTHGAPP 346
Query: 64 RPEPPVVAGAVPAAKVEAIQKSNASSPISN 93
P PP + PAA A S S P N
Sbjct: 347 APSPPTAPSSKPAASTTATTSSAPSPPAHN 436
>BP038264
Length = 592
Score = 32.7 bits (73), Expect = 0.11
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = +3
Query: 266 KINELVAILKDVESAQLRVAWLRSALDEIAENVEVINQHQEVDAA--KANTDREMESLRE 323
+I+ +A ++ A L ++L LDE+++N I + + DAA + + D ++ L
Sbjct: 6 EIHSYIASNLSIDMATLADSFLAD-LDELSDNEAEIPEDNDADAADMEEDIDGDLADLEN 182
Query: 324 QLESEMESLA--EKEQEVADIKKRIPEISDRLKELELKSAELE 364
+++S++ +K Q DI +++ E R + + +LE
Sbjct: 183 LNYDDLDSVSKLQKTQRYVDIMQKVEEALKRSSDASNQGVDLE 311
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 32.3 bits (72), Expect = 0.14
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Frame = +1
Query: 5 SNGTASNPNCPHASNPYHQCTQACSKKTS----HRTKPHAKNTSSSGAAPPPSNFDRRKK 60
S+ A P PHA++P ++ +TS T P + ++S ++ PP +
Sbjct: 262 SSSGAPTPPTPHAASPGASACRSSQNQTSPPETTLTPPTSSAPATSASSSPPHTLPKSPS 441
Query: 61 PGS-----RPEPPVVAGAVPAAKVEAIQKSNASSP 90
P P PP P A A S + +P
Sbjct: 442 PPPPPSPLSPPPPASPSPPPTASPSAPSPSKSPTP 546
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 32.0 bits (71), Expect = 0.18
Identities = 29/97 (29%), Positives = 42/97 (42%), Gaps = 6/97 (6%)
Frame = +2
Query: 3 AASNGTASNPNCPHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFD------ 56
A+S + P+ P AS P S TS + P A ++SSS + PP++F
Sbjct: 227 ASSPTKSPKPSSPSASAPPSSTPLTPSTATSE-SSPTATSSSSSASPAPPTSFSALSRAL 403
Query: 57 RRKKPGSRPEPPVVAGAVPAAKVEAIQKSNASSPISN 93
K S P PP + P + AI S + S S+
Sbjct: 404 ELKALASSPSPP---SSPPPSPPSAICMSTSLSSASS 505
>TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (43%)
Length = 515
Score = 32.0 bits (71), Expect = 0.18
Identities = 25/88 (28%), Positives = 37/88 (41%), Gaps = 5/88 (5%)
Frame = +2
Query: 15 PHASNPYHQC-----TQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKKPGSRPEPPV 69
P A +P +C T + S K+S TKP T+++ PPP+ RR P S
Sbjct: 224 PSAKSPSSRCSPNPSTSSASSKSSTSTKP--PKTTTTTPPPPPTTLLRRLNPSST----- 382
Query: 70 VAGAVPAAKVEAIQKSNASSPISNHSEI 97
S+ S+PIS ++ I
Sbjct: 383 -------------SSSSTSTPISRNTSI 427
>AV766217
Length = 425
Score = 31.2 bits (69), Expect = 0.31
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 305 QEVDAAKANTDREMESLREQLESEMESLAEKEQEVADIKKRIPEISDRLKELELKSAE 362
QEVD A +E L+S +E+L+ + ADIK +I + D++++ + + AE
Sbjct: 149 QEVDHAAKLEGSLLEKKVSYLKSNVETLSIPAAKKADIKTKIARLQDQVRKAQKQVAE 322
>TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 727
Score = 30.8 bits (68), Expect = 0.40
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 10 SNPNCPHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGAAPPPSNFDRRKKPGSRPEPP 68
++P+ P A + A S + T+ A + + + AAPP + RR +PG + P
Sbjct: 217 NSPDAPPAPPRRSHSSTAPSSRRVKPTQAPAGSPARANAAPPQRSSSRRNRPGDNAQAP 41
>BU494330
Length = 208
Score = 30.8 bits (68), Expect = 0.40
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 5 SNGTASNPNCPHASNPYHQCTQAC 28
S+ A +P+C +A NP+H+C+ C
Sbjct: 133 SDERAVHPDCRNAGNPFHECSDYC 204
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.126 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,278,978
Number of Sequences: 28460
Number of extensions: 94561
Number of successful extensions: 946
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of query: 387
length of database: 4,897,600
effective HSP length: 92
effective length of query: 295
effective length of database: 2,279,280
effective search space: 672387600
effective search space used: 672387600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0017.9