BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0017.17
(167 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16592 similar to UP|Q8L8H3 (Q8L8H3) Iron-stress related protei... 258 3e-70
BP074276 151 5e-38
AV767160 91 1e-19
BP041025 31 0.095
TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalact... 29 0.47
BP028689 28 0.80
BI420053 27 1.8
TC10720 similar to GB|AAM70580.1|21700913|AY124871 At2g47330/T8I... 26 3.0
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 26 4.0
TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break re... 26 4.0
TC10926 similar to UP|CALX_SOYBN (Q39817) Calnexin homolog precu... 25 6.8
AV421787 25 6.8
TC11834 25 6.8
BP066245 25 6.8
TC18838 weakly similar to PIR|PC4168|PC4168 pectinesterase 2 pr... 25 6.8
AV428757 25 8.9
AU089498 25 8.9
TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, part... 25 8.9
TC11831 25 8.9
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,... 25 8.9
>TC16592 similar to UP|Q8L8H3 (Q8L8H3) Iron-stress related protein, partial
(15%)
Length = 757
Score = 258 bits (660), Expect = 3e-70
Identities = 129/148 (87%), Positives = 133/148 (89%)
Frame = +2
Query: 1 MLENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQ 60
MLENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQ
Sbjct: 122 MLENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQ 301
Query: 61 DRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEKPVMYSG 120
DRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDS EK VMYSG
Sbjct: 302 DRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSSEKLVMYSG 481
Query: 121 GTSVWTHFRLPHQIMSPAASAPPSVSQL 148
GTSVW F+ P P+ + PS + L
Sbjct: 482 GTSVWNSFQTPSSDYVPSCTVYPSSNSL 565
>BP074276
Length = 481
Score = 151 bits (382), Expect = 5e-38
Identities = 84/112 (75%), Positives = 87/112 (77%), Gaps = 6/112 (5%)
Frame = -2
Query: 50 QFASSRNVQVQDRIDAVSSNLVNENPYSRFVALDGCSCS------AASQLLNDRWTAAIQ 103
Q ASSRNVQVQD IDAVSS LVNEN YSRFVALDGCSCS AASQLLNDRWTAAIQ
Sbjct: 480 QVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCSCSCSCSCSAASQLLNDRWTAAIQ 301
Query: 104 SYNNSKDSPEKPVMYSGGTSVWTHFRLPHQIMSPAASAPPSVSQLDFLGELN 155
SYNNS+DS EK MYSGGTSVWTHFRLPHQIMS S V+ + F LN
Sbjct: 300 SYNNSQDSSEKLGMYSGGTSVWTHFRLPHQIMS-KDSLLALVTTITFFRRLN 148
>AV767160
Length = 354
Score = 90.5 bits (223), Expect = 1e-19
Identities = 43/45 (95%), Positives = 43/45 (95%)
Frame = -1
Query: 123 SVWTHFRLPHQIMSPAASAPPSVSQLDFLGELNRQMQSVNPSFST 167
SVWTHFRLPHQIMSPAASAPPSVSQLDFLGEL R MQSVNPSFST
Sbjct: 354 SVWTHFRLPHQIMSPAASAPPSVSQLDFLGELTRPMQSVNPSFST 220
>BP041025
Length = 539
Score = 31.2 bits (69), Expect = 0.095
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -2
Query: 133 QIMSPAASAPPSVSQLDFLGELNRQMQSVNPSF 165
+++SP S PPS++Q D +G + R + SVN +F
Sbjct: 409 KLLSPVFSKPPSITQ*DGVGNICRLVFSVNGNF 311
>TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalactan protein
{Arabidopsis thaliana;} , partial (49%)
Length = 877
Score = 28.9 bits (63), Expect = 0.47
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 5/65 (7%)
Frame = -3
Query: 4 NLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDR-----TNSIGNDLEKNQFASSRNVQ 58
NLH PS+ Q +++ +K + R TNSIGN KN A +R +
Sbjct: 683 NLHIRGPSKMKYSLLTSYQLSQNVFIKKFNMNYGRFQ*LNTNSIGNKPSKNNVALTRTLP 504
Query: 59 VQDRI 63
+Q R+
Sbjct: 503 IQQRV 489
>BP028689
Length = 563
Score = 28.1 bits (61), Expect = 0.80
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = +2
Query: 7 PAPPSESVKRYAPPNQRNR 25
PAPPS +R PPN NR
Sbjct: 272 PAPPSSRFQRICPPNGENR 328
>BI420053
Length = 381
Score = 26.9 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 62 RIDAVSSNLVNENPYSRFVAL 82
+++ +SS +V+ NPYSR +AL
Sbjct: 255 KVEDMSSEVVDSNPYSRLMAL 317
>TC10720 similar to GB|AAM70580.1|21700913|AY124871 At2g47330/T8I13.17
{Arabidopsis thaliana;}, partial (6%)
Length = 634
Score = 26.2 bits (56), Expect = 3.0
Identities = 13/49 (26%), Positives = 25/49 (50%)
Frame = +2
Query: 21 NQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAVSSN 69
N +N + N+R + SIG D+ + QF +S + Q +++ S +
Sbjct: 110 NNKNMAANKRPTLAGFVSGGSIGGDINRRQFVASTS-PAQSAVNSTSQS 253
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 4 NLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDR 38
+LHP P + R PP +R R+ R ++RL R
Sbjct: 175 HLHPTQPQTCLSRPLPPLRRRRT---RSQNERLRR 270
>TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break repair
protein MRE11, partial (23%)
Length = 805
Score = 25.8 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 11 SESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIG 43
S+ KR+AP +R+RST+ + RT+ +G
Sbjct: 385 SKHSKRFAPSRRRSRSTSCYSAVTSSTRTSQLG 483
>TC10926 similar to UP|CALX_SOYBN (Q39817) Calnexin homolog precursor,
partial (31%)
Length = 629
Score = 25.0 bits (53), Expect = 6.8
Identities = 15/41 (36%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
Frame = -1
Query: 4 NLHPAPPSESVKRYAPPNQR---NRSTNRRKSSDRLDRTNS 41
+ HPA RYAPP+ R R +N R + L T S
Sbjct: 416 DFHPASCGRRYFRYAPPHSRPF*RRVSN*RTTDSSLSFTGS 294
>AV421787
Length = 250
Score = 25.0 bits (53), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 1/28 (3%)
Frame = +3
Query: 5 LHPAPPSE-SVKRYAPPNQRNRSTNRRK 31
LHP PP E ++R PP + R RR+
Sbjct: 123 LHPLPPMELPLRRLLPPRRPRRRQLRRQ 206
>TC11834
Length = 531
Score = 25.0 bits (53), Expect = 6.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 82 LDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEKPVMYSGGTSVWTHFRLP 131
LD +C S D+W+ A Q ++ + P YS S W H+ P
Sbjct: 342 LDPMTCPVVS----DQWSLAEQLLGTAERAQHLPGQYSKHVSQW-HYHTP 208
>BP066245
Length = 476
Score = 25.0 bits (53), Expect = 6.8
Identities = 12/47 (25%), Positives = 19/47 (39%)
Frame = +3
Query: 2 LENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEK 48
LEN P PP + PN+R +++ D ++ EK
Sbjct: 90 LENTPPPPPQPPSSQDPKPNRRKNDALKQRKKDAASLLQNLRTPEEK 230
>TC18838 weakly similar to PIR|PC4168|PC4168 pectinesterase 2 precursor -
Arabidopsis thaliana (fragment)
{Arabidopsis thaliana;} , partial (9%)
Length = 488
Score = 25.0 bits (53), Expect = 6.8
Identities = 12/49 (24%), Positives = 25/49 (50%)
Frame = +1
Query: 7 PAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSR 55
P+PPS + +PP + + +++ S+ +T+S+ + AS R
Sbjct: 325 PSPPSPA*PTKSPPTKTS*ASSSTSPSEPWSKTSSVWRSSSPEEKASPR 471
>AV428757
Length = 358
Score = 24.6 bits (52), Expect = 8.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 5 LHPAPPSESVKRYAPPNQR 23
+HPAPP R PP+ R
Sbjct: 102 IHPAPPLRPAPRQDPPHAR 158
>AU089498
Length = 438
Score = 24.6 bits (52), Expect = 8.9
Identities = 14/29 (48%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Frame = -2
Query: 120 GGTS--VWTHFRLPHQIMSPAASAPPSVS 146
G TS VW + PHQ SP+ PPS S
Sbjct: 356 GSTSA*VW---QAPHQTSSPSPPLPPSAS 279
>TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, partial (49%)
Length = 701
Score = 24.6 bits (52), Expect = 8.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 85 CSCSAASQLLNDRWTAAIQSYNNSKDSPE-KPVMYSGGTSVWTHFRLPHQIMSPAAS 140
C A+S LL +A + + SPE P Y G ++ TH+ P + S AAS
Sbjct: 8 CCHVASSPLLTQPPLSAFN--HQPQPSPETSPFHYRGPSTATTHYPSPTRCWSHAAS 172
>TC11831
Length = 600
Score = 24.6 bits (52), Expect = 8.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 106 NNSKDSPEKPVMYSGGTSVWTHFRLPHQIM 135
NNS EKP++ S GT V T L H IM
Sbjct: 502 NNSSVGEEKPILLSYGTYV*T---LEHGIM 582
>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (81%)
Length = 1263
Score = 24.6 bits (52), Expect = 8.9
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Frame = -2
Query: 67 SSNLVNENP---------YSRFVALDGCSCS 88
SS+L N NP YS V D CSCS
Sbjct: 770 SSSLENHNPCPYDASRDPYSLCVGADSCSCS 678
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,024,828
Number of Sequences: 28460
Number of extensions: 37702
Number of successful extensions: 255
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of query: 167
length of database: 4,897,600
effective HSP length: 84
effective length of query: 83
effective length of database: 2,506,960
effective search space: 208077680
effective search space used: 208077680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0017.17