BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0016.9
(219 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC20026 30 0.25
BP054590 29 0.72
TC14276 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 28 1.2
AV429116 28 1.6
TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein... 28 1.6
AV424420 27 3.6
TC17338 26 4.7
AV408368 26 6.1
TC15170 homologue to UP|Q9XE94 (Q9XE94) Geranylgeranyl hydrogena... 26 6.1
BP064595 26 6.1
AV768875 25 8.0
BP042120 25 8.0
TC19194 weakly similar to UP|Q93Z33 (Q93Z33) AT3g63150/T20O10_25... 23 8.5
>TC20026
Length = 466
Score = 30.4 bits (67), Expect = 0.25
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 98 PFCFFNYWLMEDGF 111
P C+FN WLME+GF
Sbjct: 425 PACYFNLWLMEEGF 466
>BP054590
Length = 482
Score = 28.9 bits (63), Expect = 0.72
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 100 CFFNYWLMEDGFKKMVEEWWSSAVVEGW 127
C YWL +DG + V E W+ + GW
Sbjct: 390 CLIFYWLGKDGKELKVFEDWTPVMFRGW 307
>TC14276 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (16%)
Length = 624
Score = 28.1 bits (61), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (45%)
Frame = -1
Query: 106 LMEDGFKKMVEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKE 148
L E+ + EEWW V E W + +KVK R+ KE
Sbjct: 315 LRENRRRSPEEEWWMMMVKEWWMMMVKEWWMMMVKVKERQMKE 187
>AV429116
Length = 269
Score = 27.7 bits (60), Expect = 1.6
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 115 VEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKE-NRGIRGSEKIKGLEDNLHEGECLVT 173
VE WW VVE +KL+ + K E +E NRG ++ G+ D L + VT
Sbjct: 206 VERWWCKKVVE------REEKLQVEEAKAEEGEELNRGDGERDRRTGVLDFLEDAAIFVT 45
Query: 174 KIKDSLAQ 181
+ + +++
Sbjct: 44 EKEKGVSE 21
>TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein
(Fragment), partial (44%)
Length = 818
Score = 27.7 bits (60), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (65%), Gaps = 1/24 (4%)
Frame = -2
Query: 105 WLM-EDGFKKMVEEWWSSAVVEGW 127
W+M ++ + MV+EWW VVE W
Sbjct: 586 WMMVKERWVMMVKEWWLMMVVEEW 515
>AV424420
Length = 320
Score = 26.6 bits (57), Expect = 3.6
Identities = 23/78 (29%), Positives = 33/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 100 CFFNYWLMEDGFKKMVEEWWSSAVVEGWSNF--ALMQKLKGLKVKIREWKENRGIRGSEK 157
C + + ED +K + A GWSN AL + G + E+ +NR S
Sbjct: 70 CSCDALMFEDESEKASNALLARAWSPGWSNANKALTTFINGPLI---EYSQNRRKADSAT 240
Query: 158 IKGLEDNLHEGECLVTKI 175
L +LH GE V K+
Sbjct: 241 TSFLSPHLHFGEVSVKKV 294
>TC17338
Length = 762
Score = 26.2 bits (56), Expect = 4.7
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = -1
Query: 75 GATQSADHRPVSLALGSHDFGPKPFC--FFNY---WLMEDGFKKMVEEWWSSAVVEGWSN 129
G Q D L G PK C F N+ WL K M+ + ++ +V+ W
Sbjct: 495 GTKQKEDRNQEHLTAGFSFPNPKECCPEFLNFHFLWLKSQNAKFMLHKIFTGSVIFVWRV 316
Query: 130 FALMQKLKGLK 140
++ L G+K
Sbjct: 315 QGQVRYLAGIK 283
>AV408368
Length = 428
Score = 25.8 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 118 WWSSAVVEGWSNFALMQKLKGLKV 141
WW AVV G ++A Q+++ L+V
Sbjct: 79 WWLVAVVSGGDDWAEEQRVRALRV 8
>TC15170 homologue to UP|Q9XE94 (Q9XE94) Geranylgeranyl hydrogenase, partial
(45%)
Length = 1018
Score = 25.8 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +2
Query: 137 KGLKVKIREWKENRGIRGSEKIKG 160
+G + + REW+E G RG EK+ G
Sbjct: 293 RGDR*RFREWEEVGGRRGLEKVLG 364
>BP064595
Length = 474
Score = 25.8 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 145 EWKENRGIRGSEKIKGLEDNLHEGE 169
EW++ + RGSE+++G E + GE
Sbjct: 400 EWRKGQRRRGSERVRGEEGDGEGGE 326
>AV768875
Length = 232
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (43%)
Frame = +1
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGL 56
GD N IL + +G + F ++ LIDL + +FTW R + L
Sbjct: 70 GDMNEILFPSQVRGGEFHPNRAQRFATVLDDCNLIDLGMVGGKFTWFRKRNNRL 231
>BP042120
Length = 473
Score = 25.4 bits (54), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 126 GWSNFALMQKLKGLKVKIREWKENRGIRGSEKI 158
GW++ QK K + WKE ++G+EKI
Sbjct: 284 GWNHMNFRQKKK------KYWKEQAKMKGAEKI 364
>TC19194 weakly similar to UP|Q93Z33 (Q93Z33) AT3g63150/T20O10_250, partial
(15%)
Length = 492
Score = 22.7 bits (47), Expect(2) = 8.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 47 TWGSTRGDGLWSKIDR 62
+WG RGDG+ +I R
Sbjct: 159 SWGKHRGDGVGERIRR 112
Score = 20.8 bits (42), Expect(2) = 8.5
Identities = 7/9 (77%), Positives = 9/9 (99%)
Frame = -2
Query: 9 LNDGERKGL 17
+NDGERKG+
Sbjct: 212 VNDGERKGI 186
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.329 0.145 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,399
Number of Sequences: 28460
Number of extensions: 60703
Number of successful extensions: 365
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of query: 219
length of database: 4,897,600
effective HSP length: 87
effective length of query: 132
effective length of database: 2,421,580
effective search space: 319648560
effective search space used: 319648560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0016.9