TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0016.10
         (196 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14525 weakly similar to UP|CHMT_MEDSA (P93324) Isoliquiritigen...    29  0.48
TC10431 similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 protein, pa...    27  3.1
TC10843                                                                26  4.0
AV428818                                                               26  4.0
AI967840                                                               26  5.3
TC14071 similar to UP|G3P_ATRNU (P34783) Glyceraldehyde 3-phosph...    25  9.0
TC14070 homologue to UP|G3PC_PEA (P34922) Glyceraldehyde 3-phosp...    25  9.0

>TC14525 weakly similar to UP|CHMT_MEDSA (P93324) Isoliquiritigenin
           2'-O-methyltransferase  (Chalcone O-methyltransferase)
           (ChOMT) , partial (58%)
          Length = 1077

 Score = 29.3 bits (64), Expect = 0.48
 Identities = 25/109 (22%), Positives = 44/109 (39%)
 Frame = -1

Query: 77  TSKYVKPNVWVRGMINEARVGPNVWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSV 136
           T K+V  N     M+N      N+WI + +   + N+     + +  +    G  G  S+
Sbjct: 903 TFKHVSSN-----MLNP*MNFENIWIEDYANKKKLNK--CRDQLSQEIDGIPGRXGEFSI 745

Query: 137 GTSTKRLSPNVELYQNATFSLTQNSSLIENTVISPPASDTDADLPEAPL 185
                +L+P +E Y +          +I      PPA+ T  D+P  P+
Sbjct: 744 TCGRSKLTPLIEGYLDI---------IILRPCPFPPATSTKVDIPSNPV 625


>TC10431 similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 protein, partial (38%)
          Length = 582

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 29  FGLPLVNGVGGKEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITS 78
           F L L+  V   EIQS+EA G C   S  P NE M      S A+ +  S
Sbjct: 71  FILGLLVFVSISEIQSVEAAGECGR-STTPDNEAMKLIPCASAAQDENAS 217


>TC10843 
          Length = 600

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 148 ELYQNATFSLTQNSSLIENTVISPPASDTDADLPEAPLAPHN 189
           +LY  A  + T+   + +  ++ P   DT++   + PL PH+
Sbjct: 568 KLYSKAITNGTKLIMITQYMILDPSHGDTESKTKKGPLYPHD 443


>AV428818 
          Length = 417

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = +3

Query: 105 PSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQNSSLI 164
           P   +Q     +S       ASST     LS  TST   SP+     N+  + T   S  
Sbjct: 123 PQRRSQEPPSTSSNPKPTRNASSTSAAPPLSPRTSTSTASPSPSPSPNSKTATTSPPS-T 299

Query: 165 ENTVISPPASDTDA 178
            ++  SPP++ T A
Sbjct: 300 NSSGTSPPSALTSA 341


>AI967840 
          Length = 393

 Score = 25.8 bits (55), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
 Frame = +3

Query: 102 IRNPSEH-NQHNRVGASGKDTNNLASSTGEQG 132
           I NPS H N   R  ASG++      +TGE G
Sbjct: 27  IPNPSSHRNGQGREEASGEEARRREGTTGEGG 122


>TC14071 similar to UP|G3P_ATRNU (P34783) Glyceraldehyde 3-phosphate
           dehydrogenase  (GAPDH) , partial (51%)
          Length = 760

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 108 HNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVE-LYQNATFSLT 158
           +N+H  + A G+D NNL  +T     L +G+S   +S N   L+ N +  LT
Sbjct: 502 YNKHGSIFAGGRD-NNLLGTT-----LQMGSSLVLVSENSSGLHNNISSGLT 365


>TC14070 homologue to UP|G3PC_PEA (P34922) Glyceraldehyde 3-phosphate
           dehydrogenase, cytosolic  , complete
          Length = 1414

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 108 HNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVE-LYQNATFSLT 158
           +N+H  + A G+D NNL  +T     L +G+S   +S N   L+ N +  LT
Sbjct: 454 YNKHGSIFAGGRD-NNLLGTT-----LQMGSSLVLVSENSSGLHNNISSGLT 317


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.310    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,327,507
Number of Sequences: 28460
Number of extensions: 41090
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of query: 196
length of database: 4,897,600
effective HSP length: 85
effective length of query: 111
effective length of database: 2,478,500
effective search space: 275113500
effective search space used: 275113500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)