TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.4
         (568 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB826728                                                               91  3e-27
AV426428                                                               64  9e-11
AV411435                                                               59  3e-09
AV780250                                                               58  5e-09
CN825238                                                               50  1e-06
AV428268                                                               47  1e-05
AV779667                                                               36  4e-04
AV412895                                                               40  8e-04
CB827358                                                               38  0.004
TC19933                                                                36  0.019
AU089037                                                               34  0.056
BP077596                                                               34  0.073
BU494461                                                               32  0.28
BP053577                                                               32  0.36
BE122611                                                               26  0.81
TC19924                                                                30  1.1
TC12442                                                                30  1.1
AV414192                                                               30  1.1
BP041113                                                               30  1.4
AV770305                                                               29  1.8

>CB826728 
          Length = 509

 Score = 91.3 bits (225), Expect(2) = 3e-27
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
 Frame = +1

Query: 211 FWMGTVDDVYTVKTGYEWH*QLENQNC-PSSSNEVGLEPAQWEFFWKAPSFPRVREVAWR 269
           FW G+ D  Y+ K+GYE+  +LEN++  PS+S    +    W+  W A S PR +EV WR
Sbjct: 211 FWPGSSDGWYSSKSGYEFI-RLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMWR 387

Query: 270 VCTWAVPVRVKLHRRGVDVDPSYPLCGLEDEIVEHLFMSC 309
            C   +PVR  L RRG+DVDPS P  GLEDE   H+ ++C
Sbjct: 388 ACAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507



 Score = 47.8 bits (112), Expect(2) = 3e-27
 Identities = 26/71 (36%), Positives = 38/71 (52%)
 Frame = +3

Query: 141 IWEDNWLPNGSPIKFPQEVGDEQRLVRVADLFLPNHGGWNTPLVE*TFFPTMVARILVTL 200
           I  D WLPN +P+ + +++  + +L +VADL    +G WN  LV   F P+  A  L   
Sbjct: 6   ILHDAWLPNSAPLVYCEDLFVDLQLKKVADLI--ENGRWNENLVSMVFSPSTTAVFLAVS 179

Query: 201 IRHQDVVDCLF 211
           +  Q   DCLF
Sbjct: 180 LPLQSYEDCLF 212


>AV426428 
          Length = 413

 Score = 63.5 bits (153), Expect = 9e-11
 Identities = 32/87 (36%), Positives = 40/87 (45%)
 Frame = +3

Query: 239 SSSNEVGLEPAQWEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGLE 298
           SSS    L        WKA + PR  E  WR C   +PV+  LH RG+  DP  P C   
Sbjct: 9   SSSQVPSLPSVD*RKLWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLAA 188

Query: 299 DEIVEHLFMSCNVSRGCWFARNLGLRL 325
            +  +H  + C      WFA +LG RL
Sbjct: 189 PKTADHAVLFCP*VHPIWFASSLGFRL 269


>AV411435 
          Length = 426

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = +3

Query: 208 DCLFWMGTVDDVYTVKTGYEW--H*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPRVRE 265
           D LFW       Y+VK+GY      Q    N  SSS+        W   W A    +VR 
Sbjct: 39  DRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPS--SFLWHTIWGAQVPKKVRS 212

Query: 266 VAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGLEDEIVEHLFMSCNVSRGCWF 317
             WR    A+PV+  L RR +  D   P+C    E + H  ++C  +R  WF
Sbjct: 213 FLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVWF 368


>AV780250 
          Length = 494

 Score = 57.8 bits (138), Expect = 5e-09
 Identities = 38/111 (34%), Positives = 48/111 (43%)
 Frame = +3

Query: 208 DCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPRVREVA 267
           D L W  T +  YT K+GY           PSSS  + + P      WKAP+ PR RE+ 
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPV----VWKAPTLPRCRELI 341

Query: 268 WRVCTWAVPVRVKLHRRGVDVDPSYPLCGLEDEIVEHLFMSCNVSRGCWFA 318
            R     +P R  L  RG+DVD   P C    E    + +   V    WFA
Sbjct: 342 GRAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWFA 494


>CN825238 
          Length = 692

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
 Frame = +3

Query: 165 LVRVADLFLPNHGGWNTPLVE*TFFPTMVARILVTL-IRHQDVVDCLFWMGTVDDVYTVK 223
           L+  A L +PN   WN  L++   FP   A ++ ++ +  +   +   W  + +  ++V+
Sbjct: 279 LIPNAILLIPNARRWNVQLID-QLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVR 455

Query: 224 TGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHR 283
           + Y ++ Q+  +   SSS         W+  W+ P   +++  A+RV    +P R  L R
Sbjct: 456 SAY-YNIQVAKEMQTSSS---AASSFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQR 623

Query: 284 RGVDVDPSYPLCGLE-DEIVEHL 305
           RG+ V    P C  +  E + HL
Sbjct: 624 RGIAVQNECPTCNHQIPESMSHL 692


>AV428268 
          Length = 429

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 24/76 (31%), Positives = 35/76 (45%), Gaps = 4/76 (5%)
 Frame = +3

Query: 245 GLEPAQWE----FFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGLEDE 300
           G   AQW+      W          ++W+V    V  +V L+RRGV +    PLC L++E
Sbjct: 39  GCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVISNVCPLCSLDEE 218

Query: 301 IVEHLFMSCNVSRGCW 316
             +HL  SC +    W
Sbjct: 219 STDHLLFSCPIV*RIW 266


>AV779667 
          Length = 455

 Score = 36.2 bits (82), Expect(2) = 4e-04
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = -3

Query: 547 FPDVVWIDEGPPWLSSFLRSDI 568
           +PD VWI EGPP LSS LR D+
Sbjct: 111 YPDSVWI*EGPPGLSSLLRDDV 46



 Score = 24.3 bits (51), Expect(2) = 4e-04
 Identities = 12/17 (70%), Positives = 14/17 (81%)
 Frame = -1

Query: 529 YVVRETLVLTTLPVTPL 545
           +V +ETLVLTTL  TPL
Sbjct: 164 WVGKETLVLTTLLGTPL 114


>AV412895 
          Length = 405

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 255 WKAPSFPRVREVAWRVCTWAVPVRVKLHRRGV---DVDPSYPLCGLEDEIVEHLFMSCNV 311
           W  P+   ++   WRV    +  R  L +R V    +D   PLCGL +E   HL  SC  
Sbjct: 85  WMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCAE 264

Query: 312 SRGCWF 317
           S   W+
Sbjct: 265 SMLIWY 282


>CB827358 
          Length = 453

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +3

Query: 259 SFPRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGLE 298
           + PR +++AW VC      R  L R+GV+ DPS PLCG E
Sbjct: 9   ALPRCKDLAWCVCC-----R*SLWRKGVNSDPSCPLCGNE 113


>TC19933 
          Length = 472

 Score = 35.8 bits (81), Expect = 0.019
 Identities = 15/45 (33%), Positives = 23/45 (50%)
 Frame = -3

Query: 251 WEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLC 295
           W    KA    +V+   W++C  A+P++  L RRG   D   P+C
Sbjct: 143 WSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 9


>AU089037 
          Length = 245

 Score = 34.3 bits (77), Expect = 0.056
 Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 3/58 (5%)
 Frame = -1

Query: 255 WKAPSFPRVREVAWRVCTWAVPVRVKLHRRGV---DVDPSYPLCGLEDEIVEHLFMSC 309
           WK P+       AWR+    V  R  L RR V     +   P+C   +E   HLF SC
Sbjct: 188 WKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHLFFSC 15


>BP077596 
          Length = 394

 Score = 33.9 bits (76), Expect = 0.073
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 325 LLSGSVLRLCSVIDSAEVLNQ*VNGRTNKSL 355
           ++  SV+RL  VIDS E L Q*VNG T  SL
Sbjct: 141 MIQTSVIRLGPVIDSVEALGQ*VNGSTTGSL 49


>BU494461 
          Length = 495

 Score = 32.0 bits (71), Expect = 0.28
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -3

Query: 327 SGSVLRLCSVIDSAEVLNQ*VNGRTNKSL 355
           S SVL+L SVIDS  VL+ *V GRT+ S+
Sbjct: 355 SNSVLKLGSVIDSVGVLSH*VIGRTSGSM 269


>BP053577 
          Length = 463

 Score = 31.6 bits (70), Expect = 0.36
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
 Frame = +1

Query: 474 LWNC------LCILASGGFSLRRIAYLSFRLG--RRRIELLYFLLFMIVVV*FQFLIMLI 525
           LW C      L   A  G  L++I      LG  RRR  L+   L +IV  *FQ L M  
Sbjct: 109 LWGCGGQCS*LLTWAFAGLLLKQIVCSFLILGDHRRRDALI*VPLLVIVAF*FQHLTMFQ 288

Query: 526 FLLYVVRETLV 536
           FLL+  R  L+
Sbjct: 289 FLLFDARVILL 321


>BE122611 
          Length = 357

 Score = 26.2 bits (56), Expect(2) = 0.81
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 245 GLEPAQWEFFWKAPSFPRVREVAWRVCTWAVPVRVKLH 282
           G E   W   WKA +  +VR   W V   A+P   + H
Sbjct: 253 GNESRFWSLVWKANAPEKVRFFLWLVGRNALPSNARRH 140



 Score = 22.7 bits (47), Expect(2) = 0.81
 Identities = 11/31 (35%), Positives = 15/31 (47%), Gaps = 2/31 (6%)
 Frame = -2

Query: 295 CGLEDEIVEHLFMSCNVSRGCW--FARNLGL 323
           CG   E   H+F  C  S   W  F+R++ L
Sbjct: 104 CGAPSEDANHVFRWCPGSAWMWTQFSRSIAL 12


>TC19924 
          Length = 525

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 281 LHRRGVDVDPSYPLCGLEDEIVEHLFMSCNVSR 313
           LH+R V   P  P+C    E VEH    CN +R
Sbjct: 341 LHKRRVLNSPLCPICFAAPETVEHAIFHCNGTR 243


>TC12442 
          Length = 437

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 33  SFLLWWGCYSSWYPLEQLENFVPAQTHGGS 62
           S L  WGC  SWY    L+NF+    HGG+
Sbjct: 155 SLLCSWGCMYSWY---VLQNFIFT*KHGGT 75


>AV414192 
          Length = 160

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 8/23 (34%), Positives = 15/23 (64%)
 Frame = +3

Query: 206 VVDCLFWMGTVDDVYTVKTGYEW 228
           + DC  W G +  +Y+ ++GY+W
Sbjct: 30  MTDCQVWRGDMSGLYSTRSGYQW 98


>BP041113 
          Length = 503

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
 Frame = +1

Query: 261 PRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGL---EDEIVEHLFMS 308
           P V+  AWR     +P    L +R V VDP+  +C     E E V HL  +
Sbjct: 349 PSVKAFAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHLLFA 501


>AV770305 
          Length = 442

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 33  SFLLWWGCYSSWYPLEQLENFVPAQTH 59
           S+  +  C+SSWY LE    F+P QTH
Sbjct: 172 SYARYQECFSSWYKLE----FLPLQTH 104


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.345    0.155    0.589 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,462,270
Number of Sequences: 28460
Number of extensions: 239516
Number of successful extensions: 2902
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2892
length of query: 568
length of database: 4,897,600
effective HSP length: 95
effective length of query: 473
effective length of database: 2,193,900
effective search space: 1037714700
effective search space used: 1037714700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 58 (26.9 bits)