TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.22
         (284 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17524 similar to UP|O04897 (O04897) Fructokinase  , partial (12%)    28  1.8
BI418051                                                               27  3.0
TC10069 weakly similar to UP|O23427 (O23427) DNA chromosome 4, E...    27  4.0
TC16531 weakly similar to UP|O22993 (O22993) Cell division prote...    26  6.7
TC11357                                                                26  8.8
CB827655                                                               26  8.8
TC17772                                                                26  8.8
TC8346 similar to UP|Q8L7S4 (Q8L7S4) At1g68060/T23K23_9, partial...    26  8.8
TC15975 similar to UP|KC2D_ARATH (O81275) Casein kinase II beta-...    26  8.8
CB828089                                                               26  8.8

>TC17524 similar to UP|O04897 (O04897) Fructokinase  , partial (12%)
          Length = 581

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 18/52 (34%), Positives = 26/52 (49%)
 Frame = +1

Query: 196 LHCINQRPKGSSPDYINFCQKAMLFFIQDKRKICLPFFLFSYLKECIRKSIT 247
           L C   + +G SP + +  + A     Q    +C+PFF  SY  EC RK I+
Sbjct: 289 LCCFLLQKRGFSPYWFSQVRSA---HYQSFFCLCMPFFPSSYQIEC*RKGIS 435


>BI418051 
          Length = 668

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 66  WRFNLDNIAANGYDLRPEVQVQGWEEYFNRLRGPIY 101
           W+ N+      GY L   V   GW+  FN+L    Y
Sbjct: 184 WQANVQPHFWEGYTLTMVVTANGWQHLFNQLDSQYY 291


>TC10069 weakly similar to UP|O23427 (O23427) DNA chromosome 4, ESSA I
           CONTIG fragment NO. 4, partial (9%)
          Length = 565

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 35  GQASEKMIPIAERGCAVHCVYAPEELQVLAEWRFNLDNIAANGYDLRPEV---QVQGW 89
           GQAS K           +C++      +  EW  ++  IA+NGY   PEV   QV  W
Sbjct: 265 GQASSKN----------NCIFYGS*ATLCNEWACSMQCIASNGYCAFPEVAKNQVPWW 122


>TC16531 weakly similar to UP|O22993 (O22993) Cell division protein ISOLOG
           (Cell division protein-like), partial (6%)
          Length = 730

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 215 QKAMLFFIQDKRKICLPFFLFSYLKECIRK 244
           Q A+LFF   K+KI   FFL   ++ C+R+
Sbjct: 216 QIALLFFA--KKKIARIFFLLQKMQRCLRR 133


>TC11357 
          Length = 580

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 67  RFNLDNIAANGYDLRPEVQVQ--GWEEYFNRLRGPIYDKLVKEFWKHADCDDTQVV 120
           RFN  N    G  LR  +Q+Q  G E  F  L+   +D  +  F  H+     QV+
Sbjct: 246 RFNFFNCVNVGLPLRQRIQIQRSGVEHIFLELQNS*HD*QMLFFIVHSPTTTNQVI 413


>CB827655 
          Length = 472

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 228 ICLPFFLFSYLKECIRKSI 246
           I LPFFLF +++ CI  S+
Sbjct: 363 ILLPFFLFCFVRSCIL*SV 419


>TC17772 
          Length = 516

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 212 NFCQKAMLFFIQDKRKICLP-FFLFSYLKECIRK 244
           N  Q++ +FF+  + K C P FFL    K C  K
Sbjct: 438 NQIQRSFIFFLNIETKSCTPTFFLNIETKSCTNK 337


>TC8346 similar to UP|Q8L7S4 (Q8L7S4) At1g68060/T23K23_9, partial (6%)
          Length = 846

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -2

Query: 155 KVKPRTKDETNKALYTTYKPGKSDYKV 181
           K +P  + + NKA YTT +P K   KV
Sbjct: 530 KYQPPKRGKINKATYTTTQPLKEKLKV 450


>TC15975 similar to UP|KC2D_ARATH (O81275) Casein kinase II beta-3 chain
          (CK II) , partial (15%)
          Length = 591

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 14/29 (48%), Positives = 18/29 (61%)
 Frame = +2

Query: 7  GEAAGTTRFPHMVVGQATGQLDPEAPNQG 35
          G   GTT FPH+ +    GQL P+ P+QG
Sbjct: 65 GAYFGTT-FPHLFL-MTYGQLKPQKPSQG 145


>CB828089 
          Length = 511

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 89  WEEYFNRLR--GPIYDKLVKEFWKH 111
           ++E  N ++  G ++ KLVKE+W H
Sbjct: 316 YDEPMNLMKREGSLFGKLVKEYWSH 390


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,915,449
Number of Sequences: 28460
Number of extensions: 67631
Number of successful extensions: 318
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of query: 284
length of database: 4,897,600
effective HSP length: 89
effective length of query: 195
effective length of database: 2,364,660
effective search space: 461108700
effective search space used: 461108700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)