TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.18
         (181 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP080173                                                               68  1e-12
TC13560                                                                44  2e-05
BP056414                                                               37  0.003
BP036240                                                               35  0.006
TC11605                                                                35  0.007
TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%)             34  0.013
TC11323                                                                31  0.14
TC19596                                                                30  0.18
BP043532                                                               30  0.18
BI418523                                                               30  0.24
TC19068 weakly similar to UP|AAR06913 (AAR06913) UDP-glycosyltra...    27  1.6
TC9079 weakly similar to UP|Q8W4G1 (Q8W4G1) UDP-glucose glucosyl...    27  1.6
TC10847 similar to UP|Q8RX88 (Q8RX88) AT4g01320/F2N1_21, partial...    26  3.5
TC16501 homologue to UP|Q8LJS9 (Q8LJS9) WD-repeat protein GhTTG4...    26  4.5
TC13336 similar to UP|Q8VZH0 (Q8VZH0) AT3g58640/F14P22_230, part...    25  5.9
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,...    25  7.7

>BP080173 
          Length = 382

 Score = 67.8 bits (164), Expect = 1e-12
 Identities = 31/82 (37%), Positives = 51/82 (61%), Gaps = 1/82 (1%)
 Frame = -2

Query: 23  WPLDAV-WVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILC 81
           WP+    W+K+N DG++  S++ AAC G++ D    F+   + RLG Y    AELWGI  
Sbjct: 345 WPVPMEGWIKINIDGSFAPSSNCAACGGVMWDHEGTFITGASVRLGCYFINHAELWGIFH 166

Query: 82  GARLLQERDY*RVLIETNLSIL 103
           GA++ Q R + ++L+E++ S +
Sbjct: 165 GAKIAQARGFKKILVESDSSFV 100


>TC13560 
          Length = 571

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 43/81 (52%), Gaps = 3/81 (3%)
 Frame = +2

Query: 22  WWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQ---AELWG 78
           W   DA WVK+N DGA +S+   A+CRG++R+   +++  +    G++S+      EL  
Sbjct: 146 WIKPDAGWVKINVDGA-VSNCLQASCRGVLRNADGSWLKGFRWNFGTFSSANVFLTELMA 322

Query: 79  ILCGARLLQERDY*RVLIETN 99
           +          D  RV++E++
Sbjct: 323 VKTAVEAAMSLDLARVIVESD 385


>BP056414 
          Length = 606

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 3/86 (3%)
 Frame = -3

Query: 17  APAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGS---YSTLQ 73
           A +  W      W K+N DGA +S    A+C G++RD   ++   +AR LG    +    
Sbjct: 577 ASSYHWTRPPEGWFKVNVDGA-LSGDLQASCGGVVRDAAGSWSKGFARSLGVLRWHXAFF 401

Query: 74  AELWGILCGARLLQERDY*RVLIETN 99
            EL  +      +   D  +V+IE++
Sbjct: 400 VELMAVQTAVDFIMSWDIPQVIIESD 323


>BP036240 
          Length = 567

 Score = 35.4 bits (80), Expect = 0.006
 Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 3/81 (3%)
 Frame = -3

Query: 22  WWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGS---YSTLQAELWG 78
           W   D  W K + DGA +S   +A+C G++RD    ++  + R +G    ++    EL  
Sbjct: 562 WTAPDEGWTKFDVDGA-LSRDLLASCGGVLRDSRRHWIKGFCRNMGDLTYHNVFLVELSA 386

Query: 79  ILCGARLLQERDY*RVLIETN 99
           I     +    D   V++E++
Sbjct: 385 IQSAVEIALSMDLQHVIVESD 323


>TC11605 
          Length = 546

 Score = 35.0 bits (79), Expect = 0.007
 Identities = 20/59 (33%), Positives = 32/59 (53%)
 Frame = +3

Query: 22  WWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGIL 80
           W P +A  +K N DG+   S  ++   GI+R+  SA +  +++ LG     QAE+  IL
Sbjct: 348 WCPPEANILKFNVDGSARGSPGISGAGGILRNAESAVLGRFSKPLGVLCAYQAEVKAIL 524


>TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%)
          Length = 596

 Score = 34.3 bits (77), Expect = 0.013
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 21  RWWPLDAVWVKLNSDGAYISSADMAACRGI 50
           RW P    WVKLN+DG++   + +  C G+
Sbjct: 104 RWTPPSVGWVKLNTDGSFTRGSSLMGCGGL 193


>TC11323 
          Length = 657

 Score = 30.8 bits (68), Expect = 0.14
 Identities = 20/73 (27%), Positives = 36/73 (48%)
 Frame = +2

Query: 31  KLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILCGARLLQERD 90
           KLN DG+ + +   A   G++RD  S F+  ++  L     ++  L  IL G  + +   
Sbjct: 32  KLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILEGLLVCKPLG 211

Query: 91  Y*RVLIETNLSIL 103
           Y  + IE + +I+
Sbjct: 212 YDGIGIECDSNIV 250


>TC19596 
          Length = 499

 Score = 30.4 bits (67), Expect = 0.18
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 31 KLNSDGAYISSADMAACRGIIRDRFSAFVIA-YARRLGSYSTLQAELWGILCGARLL 86
          +++SDGA+    D     GI+RD   A++   YA  LG    L+AE+  +  G  LL
Sbjct: 4  RMDSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSLGG-DALRAEIAALKHGLTLL 171


>BP043532 
          Length = 465

 Score = 30.4 bits (67), Expect = 0.18
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 66  LGSYSTLQAELWGILCGARLLQERDY*RVLIETN 99
           +G  S L AELWG++ G R    R + ++LIE +
Sbjct: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEAD 363


>BI418523 
          Length = 496

 Score = 30.0 bits (66), Expect = 0.24
 Identities = 22/105 (20%), Positives = 48/105 (44%), Gaps = 6/105 (5%)
 Frame = +1

Query: 4   VAQVTRVVSPVRDAPAIR------WWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSA 57
           + Q+ + +  +R  P ++      W P  A ++K N DGA   +   +   G+ RD    
Sbjct: 115 IYQIMQNLGDIRITPKLKPPRCWSWSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRK 294

Query: 58  FVIAYARRLGSYSTLQAELWGILCGARLLQERDY*RVLIETNLSI 102
            +  ++   G+    +A++  IL     +Q+     +LIE++ ++
Sbjct: 295 ILGYFSLNSGNGWAYEAKVRSILNALVFIQKFLLKNILIESDSTV 429


>TC19068 weakly similar to UP|AAR06913 (AAR06913) UDP-glycosyltransferase
           85A8, partial (26%)
          Length = 565

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  PAIRWWPLDAVWVKLN 33
           P   WW LD++W++LN
Sbjct: 93  PPFNWWFLDSLWMELN 140


>TC9079 weakly similar to UP|Q8W4G1 (Q8W4G1) UDP-glucose glucosyltransferase,
            partial (65%)
          Length = 1585

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 18   PAIRWWPLDAVWVKLN 33
            P   WW LD++W++LN
Sbjct: 1095 PPFSWWILDSLWMELN 1142


>TC10847 similar to UP|Q8RX88 (Q8RX88) AT4g01320/F2N1_21, partial (24%)
          Length = 720

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 13/41 (31%), Positives = 24/41 (57%)
 Frame = +3

Query: 90  DY*RVLIETNLSILGVVLVLIPVLLLLTK*SRLFSRVSPRL 130
           DY R + +  + ILG +L  IP+L LL    +L +++  ++
Sbjct: 189 DYRRRICQL*IQILGTLLTTIPILPLLKDWKQLTNQIKKQI 311


>TC16501 homologue to UP|Q8LJS9 (Q8LJS9) WD-repeat protein GhTTG4, partial
           (23%)
          Length = 611

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 78  GILCGARLLQERDY*RVLIETN--LSILGVVLVLIPVLLL 115
           GIL   R+ +      +L ETN  L +LG+ LVLIP LL+
Sbjct: 485 GILQ*TRM*ETIQTINILPETNQYLFLLGIFLVLIPGLLI 366


>TC13336 similar to UP|Q8VZH0 (Q8VZH0) AT3g58640/F14P22_230, partial (7%)
          Length = 584

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 2/28 (7%)
 Frame = -3

Query: 3   RVAQVTRV-VSPVRDAPA-IRWWPLDAV 28
           ++ +VTRV   PV   P+ + WWP D V
Sbjct: 129 KIMEVTRVDAGPVAQRPSNVSWWPSDFV 46


>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
           MIG10, partial (18%)
          Length = 1118

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 19/78 (24%), Positives = 33/78 (41%)
 Frame = -3

Query: 22  WWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILC 81
           W P      KLNSD ++ + +       +IRD     +   A R  + S + +E   +  
Sbjct: 795 WRPPPLGVYKLNSDASWKAPSPSCTVGVVIRDNLGLLISGTASRPLAPSPIVSEALALRE 616

Query: 82  GARLLQERDY*RVLIETN 99
           G  L +     R+L E++
Sbjct: 615 GLILARSLGLDRILSESD 562


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.336    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,116,196
Number of Sequences: 28460
Number of extensions: 39067
Number of successful extensions: 285
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of query: 181
length of database: 4,897,600
effective HSP length: 85
effective length of query: 96
effective length of database: 2,478,500
effective search space: 237936000
effective search space used: 237936000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.6 bits)