TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0012b.1
         (307 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8011 similar to UP|TPIC_FRAAN (Q9M4S8) Triosephosphate isomera...   605  e-174
TC14860 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomer...   203  3e-53
TC8012 similar to UP|TPIC_FRAAN (Q9M4S8) Triosephosphate isomera...   118  1e-27
TC16258 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomer...   110  3e-25
TC8256 homologue to UP|AAR12195 (AAR12195) Molecular chaperone H...    32  0.10
TC15609 homologue to UP|HS82_ARATH (P55737) Heat shock protein 8...    31  0.23
BP085060                                                               28  2.0
TC13617 similar to UP|Q9FKY1 (Q9FKY1) Similarity to ribonucleopr...    28  2.5
TC14207 similar to UP|RK15_PEA (P31165) 50S ribosomal protein L1...    27  3.3
TC12798 similar to UP|O39876 (O39876) HBc antigen, partial (8%)        27  4.3
TC15236 homologue to UP|GCST_PEA (P49364) Aminomethyltransferase...    27  5.7
TC8417 similar to UP|GAE1_PEA (Q43070) UDP-glucose 4-epimerase  ...    26  9.7
TC18994                                                                26  9.7

>TC8011 similar to UP|TPIC_FRAAN (Q9M4S8) Triosephosphate isomerase,
           chloroplast precursor  (TIM) , partial (89%)
          Length = 1305

 Score =  605 bits (1561), Expect = e-174
 Identities = 307/307 (100%), Positives = 307/307 (100%)
 Frame = +3

Query: 1   MATSLASQLSVGLRRPSPKLDSLNSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFFV 60
           MATSLASQLSVGLRRPSPKLDSLNSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFFV
Sbjct: 93  MATSLASQLSVGLRRPSPKLDSLNSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFFV 272

Query: 61  GGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSWV 120
           GGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSWV
Sbjct: 273 GGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSWV 452

Query: 121 SKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLGVIACIG 180
           SKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLGVIACIG
Sbjct: 453 SKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLGVIACIG 632

Query: 181 ELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAI 240
           ELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAI
Sbjct: 633 ELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAI 812

Query: 241 RDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSV 300
           RDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSV
Sbjct: 813 RDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSV 992

Query: 301 TSKKVAA 307
           TSKKVAA
Sbjct: 993 TSKKVAA 1013


>TC14860 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomerase,
           cytosolic  (TIM) , partial (68%)
          Length = 917

 Score =  203 bits (517), Expect = 3e-53
 Identities = 98/170 (57%), Positives = 123/170 (71%), Gaps = 2/170 (1%)
 Frame = +3

Query: 57  KFFVGGNWKCNGTKDSISKLVADLNSAKL--EPDVDVVVAPPFVYIDQVKNSITDRIEVS 114
           KFFVGGNWKCNGT + + K+V  LN AK+  E  V+VVV+PPFV++  VK  +     V+
Sbjct: 408 KFFVGGNWKCNGTTEQVKKIVGTLNEAKVPGEDIVEVVVSPPFVFLSFVKALLRSDFHVA 587

Query: 115 AQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLG 174
           AQN WV KGGA+TGE+S E L +  + WVILGHSERR ++ E  EF+  K AYAL++ L 
Sbjct: 588 AQNCWVHKGGAYTGEVSAEMLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQNLK 767

Query: 175 VIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGT 224
           VIACIGE LE+REAG T  V  +Q KA A  + +WDN+V+AYEPVWAIGT
Sbjct: 768 VIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVVLAYEPVWAIGT 917


>TC8012 similar to UP|TPIC_FRAAN (Q9M4S8) Triosephosphate isomerase,
           chloroplast precursor  (TIM) , partial (21%)
          Length = 482

 Score =  118 bits (295), Expect = 1e-27
 Identities = 60/66 (90%), Positives = 61/66 (91%)
 Frame = +3

Query: 242 DWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSVT 301
           DWL KNVSAEVASKTRIIYGG VNGG  SELAKKEDIDGFLVGGASLKGPEFATIINSVT
Sbjct: 3   DWLPKNVSAEVASKTRIIYGGCVNGGTRSELAKKEDIDGFLVGGASLKGPEFATIINSVT 182

Query: 302 SKKVAA 307
           S +VAA
Sbjct: 183 SPQVAA 200


>TC16258 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomerase,
           cytosolic  (TIM) , partial (31%)
          Length = 622

 Score =  110 bits (275), Expect = 3e-25
 Identities = 57/79 (72%), Positives = 63/79 (79%)
 Frame = -3

Query: 225 GKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVG 284
           GKVA+P QAQEVHA +R W+  NVSAEVAS  RIIYGGSVNG NS ELA + D+DGFLVG
Sbjct: 620 GKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVG 441

Query: 285 GASLKGPEFATIINSVTSK 303
           GASLK PEF  IIN+ T K
Sbjct: 440 GASLK-PEFIDIINAATVK 387


>TC8256 homologue to UP|AAR12195 (AAR12195) Molecular chaperone Hsp90-1,
           partial (47%)
          Length = 1251

 Score = 32.3 bits (72), Expect = 0.10
 Identities = 23/95 (24%), Positives = 43/95 (45%)
 Frame = +2

Query: 99  YIDQVKNSITDRIEVSAQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKD 158
           Y+ ++K    D   ++ ++    +   F     +E+LK  G + + +  +   + IG+  
Sbjct: 245 YVTRMKEGQNDIYYITGESKKAVENSPF-----LEKLKKKGYEVLYMVDAIDEYAIGQLK 409

Query: 159 EFIGKKAAYALTEGLGVIACIGELLEEREAGKTFD 193
           EF GKK   A  EGL +     E  ++ E  + FD
Sbjct: 410 EFEGKKLVSATKEGLKLEESEDEKKKQEELKEKFD 514


>TC15609 homologue to UP|HS82_ARATH (P55737) Heat shock protein 81-2
           (HSP81-2), partial (42%)
          Length = 1117

 Score = 31.2 bits (69), Expect = 0.23
 Identities = 22/95 (23%), Positives = 44/95 (46%)
 Frame = +3

Query: 99  YIDQVKNSITDRIEVSAQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKD 158
           Y+ ++K   +D   ++ ++    +   F     +E+LK  G + + +  +   + +G+  
Sbjct: 138 YVTRMKEGQSDIYYITGESKKSVENSPF-----LEKLKKKGYEVLYMVDAIDEYAVGQLK 302

Query: 159 EFIGKKAAYALTEGLGVIACIGELLEEREAGKTFD 193
           EF GKK   A  EGL +     E  ++ E  + FD
Sbjct: 303 EFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFD 407


>BP085060 
          Length = 376

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
 Frame = -2

Query: 33  HSNLRLPISSSKPSRSVIAMAGSGK-FFVGGNWKCNG 68
           H+N+   I + KPSR  +    S + FFV  +W C G
Sbjct: 312 HANMVXDIEALKPSRLPLTWWSSNRIFFVTSSW*CKG 202


>TC13617 similar to UP|Q9FKY1 (Q9FKY1) Similarity to ribonucleoprotein F,
           partial (35%)
          Length = 474

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 40  ISSSKPSRSVIAMAGSGKFFVGGNWKCNGTKDSISKLVADLNSAKLE 86
           +S  +  R  +   G G+ +V   WKC+G +  I  ++  + SA  E
Sbjct: 167 LSFQEQCRLSLLCRGIGRTWVADTWKCSGVRSRIITMLLLVRSATKE 307


>TC14207 similar to UP|RK15_PEA (P31165) 50S ribosomal protein L15,
            chloroplast precursor (CL15) (Fragment), partial (89%)
          Length = 1201

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 33   HSNLRLPISSSKPSRSVIAMAGSGKFFVGGNWKCNG 68
            H N R P +  KP  +        K+F  G  KCNG
Sbjct: 1171 HYNRRFPANIGKPKFTFYQALNFSKYFGDG*TKCNG 1064


>TC12798 similar to UP|O39876 (O39876) HBc antigen, partial (8%)
          Length = 735

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 225 GKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGGNSSE 271
           G  A  EQ +E  A++R W   + S + A++     GGSV+     E
Sbjct: 17  GWSAPLEQPREDAASVRTWKSSSGSVKAAARIAATSGGSVSARKKVE 157


>TC15236 homologue to UP|GCST_PEA (P49364) Aminomethyltransferase,
           mitochondrial precursor  (Glycine cleavage system T
           protein) (GCVT) , complete
          Length = 1457

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 20/45 (44%), Positives = 23/45 (50%), Gaps = 3/45 (6%)
 Frame = +1

Query: 186 REAGKTFDV---CFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKV 227
           RE G  FDV   C   LK   DAVP  + +VIA     A GTG +
Sbjct: 304 RENGSLFDVSHMCGLSLKG-KDAVPFLEKLVIADVASLAPGTGSL 435


>TC8417 similar to UP|GAE1_PEA (Q43070) UDP-glucose 4-epimerase
          (Galactowaldenase) (UDP-galactose 4-epimerase) ,
          partial (65%)
          Length = 789

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 28 THSLFHSNLRLPISSSKPSRSVIAMAGSGKFFVG 61
          TH +   N    +SSS P + ++   G+G  F+G
Sbjct: 48 THQILSPNSNKMVSSSSPQQKILVTGGAG--FIG 143


>TC18994 
          Length = 514

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +1

Query: 71  DSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSWVSKGGAFTGEI 130
           DS +  V + +++KLE + D +VA      +Q+K  +T  +E S + + V    A   E 
Sbjct: 124 DSFANGVEEESTSKLERERDELVAENVAKKEQIK-KLTAELEESRKMTDVIAARASDLET 300

Query: 131 SVEQLKDHGVKWVILGHSERRHI------IGEKDEFIGKK 164
            + +L+      +  G   R  +      +G+K+  IG K
Sbjct: 301 ELSRLQHDMGSEMSAGEDARAKVADLTKAVGDKESRIGVK 420


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,876,949
Number of Sequences: 28460
Number of extensions: 62008
Number of successful extensions: 274
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 307
length of database: 4,897,600
effective HSP length: 90
effective length of query: 217
effective length of database: 2,336,200
effective search space: 506955400
effective search space used: 506955400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)