BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0012a.8
(719 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP030435 150 7e-37
BG662122 83 2e-16
BP065719 55 5e-08
BP033666 39 1e-07
BP072816 42 3e-04
AV429304 41 6e-04
AV408480 41 6e-04
AV416351 39 0.002
AV419982 39 0.003
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 39 0.004
BP078507 38 0.005
BP072692 37 0.008
BI420016 37 0.011
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l... 37 0.011
CB828813 37 0.011
AV411591 36 0.019
BP058233 36 0.019
TC16964 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, par... 36 0.025
AV417847 36 0.025
BI418438 36 0.025
>BP030435
Length = 533
Score = 150 bits (379), Expect = 7e-37
Identities = 88/186 (47%), Positives = 105/186 (56%)
Frame = +1
Query: 412 CEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEERADTKGKK 471
C +H++ GH T++C TL RE+ KLI G K +
Sbjct: 103 CVYHQAMGHITEECRTLQREVGKLIATG----------------------------KPTR 198
Query: 472 KQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVNSVHEVAFG 531
Q A KG ++TIAGGFGGGG T AARKR+ RAVN+V EV FG
Sbjct: 199 IQGGNAPVPKG---------------VHTIAGGFGGGGITSAARKRYARAVNTVTEVLFG 333
Query: 532 FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLT 591
F HP IT S DF IKPH D+PIV+ LR+N NV+RVLLDQGSSADIIYG FD+LGL
Sbjct: 334 FSHPVITFSSDDFIRIKPHLDNPIVILLRVNQLNVQRVLLDQGSSADIIYGGVFDRLGLN 513
Query: 592 DNGLTP 597
+ LTP
Sbjct: 514 EADLTP 531
>BG662122
Length = 386
Score = 82.8 bits (203), Expect = 2e-16
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 11/126 (8%)
Frame = +2
Query: 345 KEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPR 404
+EQLYPRR+ ++RRP Q R+REE DM +N ++D+L+ A++V + PR
Sbjct: 11 REQLYPRREALDRRRP*QPMGSRRREE-DMELNAHLTDILQDVKAAHMVGKSGQS*PPPR 187
Query: 405 DA-NPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAG----------YQGNRQGQWRNSGD 453
+ K CE+ RS HD DDC+TL REI+KLI+ G QG+RQ R GD
Sbjct: 188 RGIDTTK*CEYRRSVVHDIDDCFTLKREIEKLIKMGRLKQYDRGSRQQGDRQQGGRLQGD 367
Query: 454 QNKAHK 459
+ + ++
Sbjct: 368 RQQGNR 385
>BP065719
Length = 567
Score = 54.7 bits (130), Expect = 5e-08
Identities = 32/120 (26%), Positives = 59/120 (48%), Gaps = 2/120 (1%)
Frame = +3
Query: 124 FSEDVESVAIPDNMKTLVLDSYSGDSDPK--DHLLYFNTKMVIIAASDAVKCRMFPSTFK 181
F E+V +P K +SGDS +H+ + + +A ++ +K + FPS+
Sbjct: 135 FIEEVLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLT 314
Query: 182 STAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 241
A WFTTL S+ + F QF + + V+ DL +++++ ES+ +Y+ R+
Sbjct: 315 KNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECK-VSXKDLASVKRKPAESIDDYLNRF 491
>BP033666
Length = 342
Score = 38.9 bits (89), Expect(2) = 1e-07
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1
Query: 202 FSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 241
F + FL FSAN+ Q T DL+NI QQ GE ++ Y + Y
Sbjct: 273 FFN*FLTXFSANQTQKATSADLFNICQQVGERVRPYFSLY 154
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -2
Query: 179 TFKSTAMAWFTTLPRGSISNFRDFSS 204
+FK AM WF P SISNF DFS+
Sbjct: 341 SFKGVAMTWFIKQPPYSISNFTDFST 264
>BP072816
Length = 492
Score = 42.0 bits (97), Expect = 3e-04
Identities = 22/47 (46%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Frame = +2
Query: 9 HHSPMRQRISPP----RRPHRVDLDSPVRTAGVQSPSHPPSPPPPPS 51
HH P R+R S P R P R P + P HPPSPPPPPS
Sbjct: 140 HHFPRRRRRSMPLQHHRPPRRQQRPHPHLRLQLPLPIHPPSPPPPPS 280
Score = 31.6 bits (70), Expect = 0.46
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 4 RRRK----QHHSPMRQRISPPRRPH-RVDLDSPVRTAGVQSPSHPPSPPPPP 50
RRR+ QHH P R++ P PH R+ L P+ SP PPS PPP
Sbjct: 155 RRRRSMPLQHHRPPRRQQRP--HPHLRLQLPLPIHPP---SPPPPPSRLPPP 295
>AV429304
Length = 355
Score = 41.2 bits (95), Expect = 6e-04
Identities = 24/62 (38%), Positives = 32/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 18 SPPRRPHRVDLDSPVRTAG-VQSPSHPPSPPPPP------SPSQVGSREHSPGNSPAPEQ 70
SPP+ PH + P +T V SP + PSPP P +P + S +SP N P+P Q
Sbjct: 39 SPPQTPHTPYVPIPPKTPSPVYSPPNVPSPPQTPHAPYVPTPPKTPSPVYSPPNVPSPPQ 218
Query: 71 QP 72
P
Sbjct: 219 TP 224
Score = 40.8 bits (94), Expect = 8e-04
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 18 SPPRRPHRVDLDSPVRTAG-VQSPSHPPSPPPP------PSPSQVGSREHSPGNSPAPEQ 70
SPP+ PH + +P +T V SP + PSPP P+PS+ S +SP N P P
Sbjct: 123 SPPQTPHAPYVPTPPKTPSPVYSPPNVPSPPQTPHAPYVPTPSKTPSXVYSPPNVPTP-- 296
Query: 71 QPAVTQEQWRHLMRSI 86
P + HLM +
Sbjct: 297 -PKILHLFILHLMSQL 341
>AV408480
Length = 262
Score = 41.2 bits (95), Expect = 6e-04
Identities = 24/68 (35%), Positives = 30/68 (43%), Gaps = 3/68 (4%)
Frame = +2
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSH---PPSPPPPPSPSQVGSREHSPGNSPA 67
SP R P H + P ++ + PS PP PPPPPSPS +P N P
Sbjct: 50 SPWRPGSLPLLASHLPNPTIP*PSSPISPPSSTTSPPPPPPPPSPSPQPPTRPAPQNGPD 229
Query: 68 PEQQPAVT 75
P P +T
Sbjct: 230 PNSAPPLT 253
>AV416351
Length = 428
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Frame = +3
Query: 18 SPPRRPHRVDL-DSPVRTAGVQSPSHPPS-----PPPPPSPSQVGSREHSPGN----SPA 67
SPPR+ L SP+ A S S PP PPPPPS S +++SP N SP
Sbjct: 6 SPPRKIVSTSLPSSPLPKAPPFSSSSPPRNPRPPPPPPPSSSSSPEKKNSPINHVLPSPT 185
Query: 68 PEQQPAVTQE 77
P Q P ++
Sbjct: 186PHQSPKTIRQ 215
Score = 32.0 bits (71), Expect = 0.35
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHP-----PSPPPPPSPSQVGSREHSPGNSP 66
SPPR P P ++ + + P PSP P SP + + SP NSP
Sbjct: 81 SPPRNPRPPPPPPPSSSSSPEKKNSPINHVLPSPTPHQSPKTIRQSDLSPMNSP 242
>AV419982
Length = 415
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/81 (32%), Positives = 30/81 (36%), Gaps = 14/81 (17%)
Frame = +1
Query: 6 RKQHHSPMRQRISP----------PRRPHRVDLDSPVRTAGVQSPSHP----PSPPPPPS 51
R++HH P P P H +P +PS P P PPPPP
Sbjct: 145 RRRHHLPPTPTSPPISTTPT*AQFPSPGHAPSWVAPSTFTSTTTPSIPLSLSPPPPPPPP 324
Query: 52 PSQVGSREHSPGNSPAPEQQP 72
PS S S G S AP P
Sbjct: 325 PSASTSSPSSSGKSTAPRSSP 387
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 38.5 bits (88), Expect = 0.004
Identities = 22/65 (33%), Positives = 30/65 (45%)
Frame = +1
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQ 70
SP+ Q PP P SP+ P + P+PP PSP+ +P N+P+P
Sbjct: 244 SPISQ---PPHVPTPPSTPSPI-----SQPPYTPTPPKTPSPTSQPPHTPTPPNTPSPIS 399
Query: 71 QPAVT 75
QP T
Sbjct: 400 QPPYT 414
Score = 37.4 bits (85), Expect = 0.008
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
PP P + SP+ P + P+PP PSP+ SP NS +P QP T
Sbjct: 355 PPHTPTPPNTPSPI-----SQPPYTPTPPKTPSPTNQPPHIPSPPNSSSPTSQPPNT 510
Score = 36.6 bits (83), Expect = 0.014
Identities = 19/58 (32%), Positives = 27/58 (45%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
SP +P + L P + + P H P+PP PSP +P +P+P QP T
Sbjct: 196 SPTSQPPYIPLP-PKTPSPISQPPHVPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHT 366
Score = 35.0 bits (79), Expect = 0.042
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQE 77
+PP P + P ++PS PP PSP S P N+P+P + P+ T +
Sbjct: 370 TPPNTPSPIS-QPPYTPTPPKTPSPTNQPPHIPSPPNSSSPTSQPPNTPSPPKTPSPTSQ 546
Score = 35.0 bits (79), Expect = 0.042
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = +1
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQ 70
SP+ Q PP P SP P H PSPP SP+ SP +P+P
Sbjct: 388 SPISQ---PPYTPTPPKTPSPTN-----QPPHIPSPPNSSSPTSQPPNTPSPPKTPSPTS 543
Query: 71 QPAVT 75
QP T
Sbjct: 544 QPPNT 558
Score = 35.0 bits (79), Expect = 0.042
Identities = 20/58 (34%), Positives = 24/58 (40%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
SP P + + G Q P H P PP PSPS SP +P+P P T
Sbjct: 4 SPVYTPPSIPTPPKTPSPGNQPP-HTPIPPKTPSPSYSPPNVPSPPKAPSPNNHPPYT 174
Score = 34.3 bits (77), Expect = 0.071
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQ 70
SP+ Q PP P SP P H P+PP PSP +P +P+P
Sbjct: 292 SPISQ---PPYTPTPPKTPSPT-----SQPPHTPTPPNTPSPISQPPYTPTPPKTPSPTN 447
Query: 71 QP 72
QP
Sbjct: 448 QP 453
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 5/63 (7%)
Frame = +1
Query: 18 SPPRRP----HRVDLDSPVRTAGVQS-PSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
SPP+ P H +P +T S P + P PP PSP +P ++P+P QP
Sbjct: 130 SPPKAPSPNNHPPYTPTPPKTPSPTSQPPYIPLPPKTPSPISQPPHVPTPPSTPSPISQP 309
Query: 73 AVT 75
T
Sbjct: 310 PYT 318
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
PP P SP SP + PSPP PSP+ +P +P+P QP
Sbjct: 67 PPHTPIPPKTPSPS-----YSPPNVPSPPKAPSPNNHPPYTPTPPKTPSPTSQP 213
Score = 32.0 bits (71), Expect = 0.35
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQE 77
+PP+ P + P ++PS SPP PSP + S + P +P P + P+ T +
Sbjct: 34 TPPKTPSPGN-QPPHTPIPPKTPSPSYSPPNVPSPPKAPSPNNHPPYTPTPPKTPSPTSQ 210
Score = 30.4 bits (67), Expect = 1.0
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQE 77
+PP P + P ++PS PP P+P S P +P P + P+ T +
Sbjct: 274 TPPSTPSPIS-QPPYTPTPPKTPSPTSQPPHTPTPPNTPSPISQPPYTPTPPKTPSPTNQ 450
>BP078507
Length = 414
Score = 38.1 bits (87), Expect = 0.005
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPP-SPPPPPSPSQVGSREHSPGNSPAPE 69
+P Q PP H+ T+ SPS PP S P PP P + H P +SP+P
Sbjct: 231 APSSQLRPPPSTSHQPPPTLLQPTSDTPSPSPPPPSSPNPPPPHHSPNPPHPPSSSPSPP 52
Query: 70 Q 70
Q
Sbjct: 51 Q 49
>BP072692
Length = 422
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/79 (32%), Positives = 31/79 (38%), Gaps = 19/79 (24%)
Frame = +2
Query: 16 RISPPRRPHRVDLDSPVRTAGVQS--------------PSHPPSPPPPPSPSQVG----- 56
R PP RPHR L + ++ S PS PSP P S S+VG
Sbjct: 158 RFHPPPRPHRRQLTATTSSSATPSSSPTPSAAPPLSSPPSSTPSPSPSTSSSKVGPDFPF 337
Query: 57 SREHSPGNSPAPEQQPAVT 75
S H P S P P+ T
Sbjct: 338 SPTHPPSRSSQPPTPPSST 394
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +3
Query: 4 RRRKQHHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSP 52
RRR H P + PP PHR D P SP PPP+P
Sbjct: 246 RRRPLFHHPHPRLPLPPLPPHRPRWD-------------PTSPSPPPTP 353
>BI420016
Length = 559
Score = 37.0 bits (84), Expect = 0.011
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = +2
Query: 12 PMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGS 57
P ++PP P ++P+ + SP PPSPPP P+P+ S
Sbjct: 248 PSSPTLTPPPSPPSPTPNAPLSPSSPPSPPTPPSPPPSPAPNPTPS 385
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Frame = +2
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPP--------PPSPSQVGSREHSPGNSPAPE 69
+P +P SP + + P PPSP P PPSP SP SPAP
Sbjct: 206 NPSPKPVPASTPSPPSSPTLTPPPSPPSPTPNAPLSPSSPPSP----PTPPSPPPSPAPN 373
Query: 70 QQPAVT 75
P+ T
Sbjct: 374 PTPSAT 391
>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (32%)
Length = 706
Score = 37.0 bits (84), Expect = 0.011
Identities = 27/76 (35%), Positives = 32/76 (41%)
Frame = +3
Query: 9 HHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
HH + R PH L P R SP PP PPPP SP++V H P +S
Sbjct: 126 HHPSLLHRRLNGLPPHLRPLVPPPR-----SPPPPPQPPPPSSPARVLP*PHQPHHSS-- 284
Query: 69 EQQPAVTQEQWRHLMR 84
T+ RHL R
Sbjct: 285 ------TRHLPRHLRR 314
>CB828813
Length = 465
Score = 37.0 bits (84), Expect = 0.011
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 17 ISPP--RRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
++PP +PH + +P + PP PPPPP+P++ S P +P P P
Sbjct: 163 LTPPILTKPHPIGSTTPFSAL-----TTPPPPPPPPTPTRTSSTSKPPIPTPPPPNPP 321
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 19/43 (43%)
Frame = +1
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPS 53
+P +PP P +P RT+ P P PPP P PS
Sbjct: 208 TPFSALTTPPPPPPP---PTPTRTSSTSKPPIPTPPPPNPPPS 327
>AV411591
Length = 258
Score = 36.2 bits (82), Expect = 0.019
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
SP P+R+ P +A P P +PPP PSP + + S + P P
Sbjct: 76 SPTFPPYRISTSPPSPSASSSPPPGPTTPPPAPSPLSLSTVAVSSKSPPCP 228
>BP058233
Length = 548
Score = 36.2 bits (82), Expect = 0.019
Identities = 22/60 (36%), Positives = 26/60 (42%), Gaps = 5/60 (8%)
Frame = +3
Query: 4 RRRKQHHSPMRQRISP-----PRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSR 58
+R QH P R SP PR + +G S S P+ PPPPSPS SR
Sbjct: 321 KRSXQHRPPPSARSSPSTSSAPRASPPISGTPSAAASGTTSISPTPTSPPPPSPSSPRSR 500
>TC16964 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, partial (15%)
Length = 593
Score = 35.8 bits (81), Expect = 0.025
Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 11/74 (14%)
Frame = +3
Query: 9 HHSPMRQRISPPRRPHRVDLDS-----------PVRTAGVQSPSHPPSPPPPPSPSQVGS 57
HH+P+R SP R PHR + P + + P P SP PP+P +V
Sbjct: 336 HHNPLR---SPLRGPHRAEAPPSLPRDH*QNRFPRQGSPGDDPHLPESPQQPPAP*RVHP 506
Query: 58 REHSPGNSPAPEQQ 71
R H P P P Q+
Sbjct: 507 RCHPP--LPLPSQR 542
Score = 33.1 bits (74), Expect = 0.16
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 2 ETRRRKQHHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHS 61
+ R ++ H+P ++R P H L SP+R G PPS P ++ R+ S
Sbjct: 270 DRRAQESDHAPPQRRNHPSALHHHNPLRSPLR--GPHRAEAPPSLPRDH*QNRF-PRQGS 440
Query: 62 PGNSP----APEQQPA 73
PG+ P +P+Q PA
Sbjct: 441 PGDDPHLPESPQQPPA 488
>AV417847
Length = 432
Score = 35.8 bits (81), Expect = 0.025
Identities = 26/87 (29%), Positives = 36/87 (40%), Gaps = 10/87 (11%)
Frame = +2
Query: 22 RPHRVDLDSPVRTAGVQSPSHPPSPPPPPS----------PSQVGSREHSPGNSPAPEQQ 71
+ H + LDSP G S HPP+ PP P+ S + S H GN Q
Sbjct: 83 KSHCLHLDSPTGHRGFPSSPHPPATPPQPTATATQPTAPPSSLLHSHPHPHGNWGRDRGQ 262
Query: 72 PAVTQEQWRHLMRSIGNIQQRNEHLQA 98
TQ Q R + ++R+ L+A
Sbjct: 263 WTETQNQ-----RGLSQKRKRSRRLEA 328
>BI418438
Length = 431
Score = 35.8 bits (81), Expect = 0.025
Identities = 20/46 (43%), Positives = 25/46 (53%), Gaps = 6/46 (13%)
Frame = +1
Query: 12 PMRQRIS----PPRRPHRVDLDSPVR--TAGVQSPSHPPSPPPPPS 51
P RQ+ S PP P + SP T + S S+PPSPPPPP+
Sbjct: 268 PPRQKSSKPARPPASPSNANPPSPTSLLTQPLSSSSNPPSPPPPPT 405
Score = 32.7 bits (73), Expect = 0.21
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Frame = +1
Query: 30 SPVRTAGVQSPS----HPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAV 74
SP ++ PS +P +PPPPPSPSQ P SP P P++
Sbjct: 49 SPSQSQSNHEPSTF*KYPLNPPPPPSPSQY------PPFSPCPLSSPSL 177
Score = 30.8 bits (68), Expect = 0.79
Identities = 19/57 (33%), Positives = 24/57 (41%), Gaps = 9/57 (15%)
Frame = +2
Query: 23 PHRVDLDSPVRTAG-VQSPSHP--------PSPPPPPSPSQVGSREHSPGNSPAPEQ 70
PH + L V + + SP HP P PPPP P + R H +PA Q
Sbjct: 128 PHNIHLSHHVPSPPPLFSPPHPHPLLRLPQPQQPPPPFPHPLPPRRHRRARNPASLQ 298
Score = 30.4 bits (67), Expect = 1.0
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 1/46 (2%)
Frame = +1
Query: 31 PVRTAGVQSPSHPPSPP-PPPSPSQVGSREHSPGNSPAPEQQPAVT 75
P TA + + PP PP P P P Q S+ P SP+ P+ T
Sbjct: 205 PPPTATTTTTTIPPPPPSPTPPPRQKSSKPARPPASPSNANPPSPT 342
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,422,840
Number of Sequences: 28460
Number of extensions: 193555
Number of successful extensions: 7977
Number of sequences better than 10.0: 558
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5725
length of query: 719
length of database: 4,897,600
effective HSP length: 97
effective length of query: 622
effective length of database: 2,136,980
effective search space: 1329201560
effective search space used: 1329201560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0012a.8