BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0012a.1
(263 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Ar... 41 2e-04
BP075190 40 3e-04
BP055246 39 0.001
TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, parti... 33 0.050
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 33 0.065
TC18188 similar to UP|ZFP6_ARATH (Q39265) Zinc finger protein 6,... 33 0.065
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 32 0.085
BP065317 32 0.11
TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%) 32 0.11
TC10007 31 0.25
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ... 31 0.25
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 30 0.32
TC8330 weakly similar to GB|AAM61257.1|21536925|AY084696 calmodu... 30 0.42
AV409919 28 1.2
AU089032 28 1.2
BP054137 28 1.2
BI417981 28 1.6
TC10792 28 1.6
TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine b... 28 1.6
AV410336 28 1.6
>TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
thaliana;}, partial (52%)
Length = 800
Score = 40.8 bits (94), Expect = 2e-04
Identities = 45/169 (26%), Positives = 65/169 (37%), Gaps = 9/169 (5%)
Frame = +1
Query: 99 RERELLKAHHKRTCHIRYIHPQRRQERASNNQGRRTMLPSEGTRTSLPKLPSTQL-KSSP 157
R R H +RT H R+ H +R+Q R + R P E R P PST L + SP
Sbjct: 217 RRRTAATLHQRRTHHRRHRH-RRQQPRRDSPSSRHPRRPLESLRRRPP--PSTLLERRSP 387
Query: 158 S---PAKTKASSDHRSLTTTLGKRQSSKTLLPSSQVIRTSKTRSLEKISGNKVATDILSV 214
+ P + S H S +R L + R + R + + +
Sbjct: 388 NRLHPVRHLRSRRHPSQALRPHRRHPHLLRLLDQPLHRIGELRGQRRHAQKR-------- 543
Query: 215 STPPRQHPEIRHSSPGERTRTLCSPCFPTTTSRQEK-----VEGKDPTP 258
PPR+HP+ S P + L + P RQ++ V G P P
Sbjct: 544 --PPRRHPQRAQSPPRDAPNRL*ALRRPFRARRQDRVPRAAVHGGSPPP 684
>BP075190
Length = 512
Score = 40.4 bits (93), Expect = 3e-04
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = +1
Query: 3 CSSRTFSRPCIASMSLPSYTKPTTLPRSHAFFARVKKRP 41
CSS S P IAS SLP Y+ P T PRSHA VK P
Sbjct: 256 CSS---SNPRIASRSLPGYSSPITFPRSHALLDLVKYSP 363
>BP055246
Length = 544
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/39 (48%), Positives = 27/39 (68%)
Frame = +1
Query: 10 RPCIASMSLPSYTKPTTLPRSHAFFARVKKRPLLTVPKS 48
RP + S S PS +PT+LP +HAF AR++ R L +P+S
Sbjct: 313 RP*VVSSSPPSKVQPTSLPINHAFVARIQ*RLLGALPES 429
>TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, partial (10%)
Length = 901
Score = 33.1 bits (74), Expect = 0.050
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Frame = +3
Query: 119 PQRRQERASNNQGRRTMLPSEGTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTT---- 174
P R RA+ PS S P T SPSP + + ++ ++T+
Sbjct: 87 PPRSSHRAATTPAAPISPPSAPPSIS-PTTKPTAPSPSPSPLRRRRAAGSHGVSTSPAAA 263
Query: 175 -LGKRQSSKTLLPSSQVIRTSKTRSLEKISGNKV-ATDILSVSTPPRQHPEIRHSSPG-- 230
L R SS T + + + ++ T S ++ + A+ + ++PPR P + SSP
Sbjct: 264 WLVLRPSSPTRVATRTLSGSTSTTSPPTLNSPRSRASPLRRGTSPPRSPPPLSRSSPR*R 443
Query: 231 -ERTRT 235
RTRT
Sbjct: 444 CRRTRT 461
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 32.7 bits (73), Expect = 0.065
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Frame = +2
Query: 137 PSEGTRTSLPK---LPSTQLKSSPSPAKTKASSDHRSLTTTLGKRQSSKTLLPSS--QVI 191
PS T LP + +T +PSPA T AS RS TTT T P+S ++
Sbjct: 257 PSPARLTPLPSASPVTTTSTPPTPSPAATNASPSRRSTTTT--------TTPPTSPTPML 412
Query: 192 RTSKTRSLEKISGN--KVATDILSVSTP-----PRQHPEIRHSSPGERTRTLCSPCFPTT 244
TS L+ + G + T +STP P+ P SP +++ +P PT
Sbjct: 413 LTSPPMKLKPLPGYFLPLPTPKAPISTPLTTPTPKSTPS-SSISPKLTRQSITAPPPPTE 589
Query: 245 TSR 247
+ R
Sbjct: 590 SFR 598
>TC18188 similar to UP|ZFP6_ARATH (Q39265) Zinc finger protein 6, partial
(21%)
Length = 594
Score = 32.7 bits (73), Expect = 0.065
Identities = 23/70 (32%), Positives = 34/70 (47%)
Frame = +2
Query: 119 PQRRQERASNNQGRRTMLPSEGTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTTLGKR 178
P+R QERA Q R +EG R P+ +L+++ +PA + S D T +G
Sbjct: 365 PERAQERAPAAQARAATSHAEGRRILRPEPDHLRLRAAAAPAISLGSYDGAGGDTVVGVH 544
Query: 179 QSSKTLLPSS 188
+ T PSS
Sbjct: 545 --AATWWPSS 568
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 32.3 bits (72), Expect = 0.085
Identities = 31/117 (26%), Positives = 45/117 (37%), Gaps = 6/117 (5%)
Frame = +1
Query: 136 LPSEGTRTSLPKLPSTQLKSSPS------PAKTKASSDHRSLTTTLGKRQSSKTLLPSSQ 189
LPS T + P PST ++ PS P T +S ++ +L + +SK L
Sbjct: 91 LPSSATHANPPPPPSTAARTPPSSAPPATPKSTPPTSSPPAIHVSLSAKSASKPPL---- 258
Query: 190 VIRTSKTRSLEKISGNKVATDILSVSTPPRQHPEIRHSSPGERTRTLCSPCFPTTTS 246
S R + S A+ STPP P + P + T P TT +
Sbjct: 259 ---ASHARPMPPTS----ASPATMTSTPPTPSPPATNVPPSLPSSTPPPPTSSTTNT 408
>BP065317
Length = 578
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Frame = -2
Query: 13 IASMSLPSYTKPTTLPRSHAFFARVKKRP----LLTV--PKSGTDEEAKELTK 59
I S SLP+ P +LP SH+ A K P LL + +SGT+E ++L +
Sbjct: 436 IISPSLPAQATPISLPNSHSLSALAKSLPTQAALLCICRTESGTEEHCEKLLR 278
>TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)
Length = 1073
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/71 (29%), Positives = 33/71 (45%)
Frame = +1
Query: 126 ASNNQGRRTMLPSEGTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTTLGKRQSSKTLL 185
+S++ P+ T S+PK +TQ S PSP+K S HR +R S+
Sbjct: 322 SSSSSSSSASPPASSTSFSVPKRLTTQ--SKPSPSKE*TSPRHRRHPRRQSRRSSTSR*E 495
Query: 186 PSSQVIRTSKT 196
P++ R+ T
Sbjct: 496 PTTATTRSGST 528
>TC10007
Length = 594
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/93 (29%), Positives = 42/93 (45%)
Frame = -2
Query: 104 LKAHHKRTCHIRYIHPQRRQERASNNQGRRTMLPSEGTRTSLPKLPSTQLKSSPSPAKTK 163
L+ HH+ H +H + + +S N + L T+ +LPKL T L P P T
Sbjct: 299 LQLHHELATHYP-VHVPFQSQSSSLN*PSSSSLGGLTTKITLPKLSLTPLSFKPKPLSTF 123
Query: 164 ASSDHRSLTTTLGKRQSSKTLLPSSQVIRTSKT 196
+ S TL K S P+S ++R++ T
Sbjct: 122 KPTPSSS---TLTK*NPSSA--PTSLLLRSATT 39
>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II , partial
(6%)
Length = 583
Score = 30.8 bits (68), Expect = 0.25
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = -1
Query: 137 PSEGTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTTLGKRQSSKTLLPSSQVIRTSKT 196
P + + P P+ SSPSP+ T ASS S T R P+S+ +S
Sbjct: 298 PPTSSPNTHPPTPTPNP*SSPSPSTTTASSASPSTKTLPSTRPR-----PASESPTSSSP 134
Query: 197 RSLEKISGNKVATDILSVSTPP 218
S SG+ V+ +S PP
Sbjct: 133 SSPPPSSGSSVSPPRISPPPPP 68
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 30.4 bits (67), Expect = 0.32
Identities = 36/164 (21%), Positives = 64/164 (38%)
Frame = +2
Query: 20 SYTKPTTLPRSHAFFARVKKRPLLTVPKSGTDEEAKELTKAEPSVNNKESSNSVVPGINE 79
S KP + A + K +P PKS K KA+P+ K + P
Sbjct: 521 SKPKPKAKAKPAAAATKAKAKP---APKSKA-AATKTTAKAKPAAAAKPKAK---PAAKA 679
Query: 80 EDPPTSKTVSLALIFLGLPRERELLKAHHKRTCHIRYIHPQRRQERASNNQGRRTMLPSE 139
+ +K V+ P + + KA K + P + + A+ + + P++
Sbjct: 680 KPAAKAKAVAAPAKAKASPAKPKA-KAKSKTAPRMNVNPPVPKAKPAA--KAKPAARPAK 850
Query: 140 GTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTTLGKRQSSKT 183
+RTS P ++ P PA KA++ + GK ++ K+
Sbjct: 851 ASRTSTRTTPGKKVPPPPKPAPKKAATPVKKAPAKSGKAKTVKS 982
>TC8330 weakly similar to GB|AAM61257.1|21536925|AY084696 calmodulin-like
protein {Arabidopsis thaliana;} , partial (72%)
Length = 1174
Score = 30.0 bits (66), Expect = 0.42
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = -1
Query: 155 SSPSPAKTKASSDHRSLTTTLGKRQSSKT-LLPSSQVIRTSKTRSLEKISGNKVA-TDIL 212
S+PS + +S+ HRS + SS +LPS V +TS SL +SG+ T +
Sbjct: 643 STPSIMRRHSSNVHRSSPIAVNTLNSSSAEILPSRSVSKTSNA-SLSSVSGSDPGPTRSI 467
Query: 213 SVST--PPRQHPEIRHSSPGERTRTLC-SPCFPTTTSRQEKVEGKDPTPFLN 261
S ST P P S + C +P +T +R +D TP L+
Sbjct: 466 SASTLILPLPSPSTSRSITSTSSSLSCNAPRRVSTATR----SARDTTPSLS 323
>AV409919
Length = 423
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/61 (32%), Positives = 27/61 (43%)
Frame = +3
Query: 186 PSSQVIRTSKTRSLEKISGNKVATDILSVSTPPRQHPEIRHSSPGERTRTLCSPCFPTTT 245
PSS TS + + + T LS S+PP + P SSP T + S P TT
Sbjct: 186 PSSSPSSTSSSTA----GARRFGTPPLSTSSPPPRPPPSSPSSPPPSTSSASSSAPPPTT 353
Query: 246 S 246
+
Sbjct: 354 T 356
>AU089032
Length = 593
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/101 (28%), Positives = 42/101 (40%), Gaps = 2/101 (1%)
Frame = +3
Query: 77 INEEDPPTSKTVSLALIFLG-LPRERELLKAHHKRTCHIRYIHPQRRQERASNNQGRRTM 135
IN + ++ VS AL+F L + L H + + +P + S N +
Sbjct: 21 INRREKLVTRWVSKALLFSAWLLSLQSHLPLRHLTS---QKFYPNTQSSPHSANTSPKPS 191
Query: 136 LPSEGTRTSL-PKLPSTQLKSSPSPAKTKASSDHRSLTTTL 175
PS+ T +L P PST S PSPA S S T +
Sbjct: 192 SPSK*TAATLSPSSPSTIAPSPPSPASPLMPSRXSSAPTXV 314
>BP054137
Length = 474
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +1
Query: 106 AHHKRTCHIRYIHPQRRQERASNNQGRRTMLPSEGTRTSLPKLPSTQLKSSP---SPAKT 162
+HH+R CH + + R NN + P + + P LP SP SP
Sbjct: 217 SHHRRYCHYYHRRHHHQHHRRRNNHHAPPLPPLLISSSLSPLLPLRCRHHSPLPSSPLLP 396
Query: 163 KASSDHRSLTTTL 175
RS+T T+
Sbjct: 397 LPPPPPRSITATI 435
>BI417981
Length = 477
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = -1
Query: 137 PSEGTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTTLGKRQSSKTLLPS 187
P+ ++TS P ++ SP T +S HRS L R S+ T LPS
Sbjct: 189 PTTTSQTS----PEPSCSAARSPTATATASRHRSKAPCLRCRSSTGTRLPS 49
>TC10792
Length = 480
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -1
Query: 119 PQRRQERASN--NQGRRTMLPSEGTRTSLPKLPSTQLKSSPSPAKTKASSDHRSLTTTLG 176
P+R++E S +Q +R P +GT + S Q + + P K K S G
Sbjct: 318 PERKKEPPSKQLHQNQRGPPPIQGTEPPWEEPSSHQKQPTQRPCKEKRSPGTTQTLGKPG 139
Query: 177 KRQSSKTLLPSS 188
KR++ + L S+
Sbjct: 138 KRKNGRNLRSSA 103
>TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine
biosynthesis protein-like {Arabidopsis thaliana;} ,
partial (45%)
Length = 503
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 RERELLKAHHKRTCHIRYIHPQRRQ--ERASNNQGRRTML--PSEGTRTSLPKLPSTQLK 154
R L+ H R C R+ P+RR+ ER S +QG +T P G + P +
Sbjct: 234 RRSRRLRRHGPRACPRRHPRPRRRRSHERPSAHQGNQTSRHHPRHG------QSPHRPFR 395
Query: 155 SSPSP 159
SP P
Sbjct: 396 RSPDP 410
>AV410336
Length = 358
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 108 HKRTCHIRYIHPQRRQERASNNQGRRTMLPSEGTRTSLPKLPSTQLKSSPSP 159
H+ ++++HP+R R ++ RR P + +LP LP+T L+ P P
Sbjct: 164 HRPPPPLQHLHPRRPLLRRRLSR-RRLPPPLHYFQKNLPLLPNTHLRHPPPP 316
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.125 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,788,680
Number of Sequences: 28460
Number of extensions: 67989
Number of successful extensions: 608
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of query: 263
length of database: 4,897,600
effective HSP length: 88
effective length of query: 175
effective length of database: 2,393,120
effective search space: 418796000
effective search space used: 418796000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0012a.1