BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0011b.6
(189 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV426428 55 6e-09
AV780729 36 1e-07
CB827358 51 1e-07
TC9793 49 5e-07
BP053577 46 4e-06
AV780577 37 0.003
TC10764 35 0.006
BP032481 26 0.080
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 32 0.090
BP071404 31 0.12
AV418280 31 0.12
TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-... 30 0.34
TC13242 29 0.45
TC11869 28 0.76
AV780250 27 1.7
AV780445 27 2.2
TC10037 27 2.9
AV411435 26 4.9
AW164087 26 4.9
BP085802 25 6.4
>AV426428
Length = 413
Score = 55.5 bits (132), Expect = 6e-09
Identities = 30/91 (32%), Positives = 49/91 (52%)
Frame = +3
Query: 1 MRSALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVS 60
++++L R + DP C C +T +H L P +WFASSL R+N + +FV+
Sbjct: 123 VKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VHPIWFASSLGFRLNQECKMHEFVA 302
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQNGLVFQ 91
+ ++ + T+LYAIW +QN L F+
Sbjct: 303 DFMQVAD*DTCGEFLTILYAIWTAQNELCFR 395
>AV780729
Length = 475
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 154 LVARDENEEVLEATSSYPWPILSPLLAEALSLRWSM 189
+VAR+ E+L + ++YP LSPLLAEA RW++
Sbjct: 348 MVARNYECEILASVTAYPVTSLSPLLAEAGCFRWAL 455
Score = 34.3 bits (77), Expect(2) = 1e-07
Identities = 24/84 (28%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 71 LAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVAL-GSGWVRVHESPHAGRELPSRWK 129
L +QT+ Y + E++N F+R F V+ + L +HE + + W+
Sbjct: 97 LGLIQTLCYTL*EARNKGRFERKVFSHLEVVQRSQRLLRHPRAALHEQNPSRMVQLATWR 276
Query: 130 RPATRAVKVNLDARVHDGSMAGLV 153
RP VN DA DG +G+V
Sbjct: 277 RPTQGVCMVNFDATFEDGRASGMV 348
>CB827358
Length = 453
Score = 50.8 bits (120), Expect = 1e-07
Identities = 38/156 (24%), Positives = 67/156 (42%)
Frame = +2
Query: 11 EVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVSEMVREGMPEV 70
EV C +C + +M + P+ VW + F+ + + E +V
Sbjct: 17 EVQRSCLVCVLPLVSMAERSEQ*PILPFVW*R-----------VLNYFLLQFLVEADSDV 163
Query: 71 LAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESPHAGRELPSRWKR 130
+A+ Q A+WE+ N L+FQ + F + A ++ V + G + W+R
Sbjct: 164 VASCQMASCALWEAHNKLIFQEVPFRCEAAIQRATSMSQVDVSTVDPSANGPVHDAIWRR 343
Query: 131 PATRAVKVNLDARVHDGSMAGLVLVARDENEEVLEA 166
P KVN D S++G+ +VAR+ + +L A
Sbjct: 344 PPRGVFKVNFDGSWKSDSVSGIGMVARNHDGLILAA 451
Score = 27.7 bits (60), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +3
Query: 2 RSALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFAS 43
R +L ++ V DP C +CGNE T+ + + + + W A+
Sbjct: 51 R*SLWRKGVNSDPSCPLCGNEF*TIFYCSFWWKLIVMSWRAA 176
>TC9793
Length = 568
Score = 48.9 bits (115), Expect = 5e-07
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 111 WVRVHESPHAGRELPSR--WKRPATRAVKVNLDARVHDGSMAGLVLVARDENEEVLEATS 168
W + + E P R W+ P +KVN+DA G LVAR N +L A +
Sbjct: 5 WTDAQDRKESSIEAPRRMVWEPPPEGIIKVNIDAGWSGSCSTGFSLVARSHNAVMLVAAT 184
Query: 169 SYPWPILSPLLAEALSLRWSM 189
+ P LAEAL+LRW +
Sbjct: 185 HLEETQIEPTLAEALALRWCL 247
>BP053577
Length = 463
Score = 46.2 bits (108), Expect = 4e-06
Identities = 24/43 (55%), Positives = 31/43 (71%)
Frame = +3
Query: 147 GSMAGLVLVARDENEEVLEATSSYPWPILSPLLAEALSLRWSM 189
G +AGL +VAR+ + EV+ + S P I SPLLAEAL LRW+M
Sbjct: 3 GGIAGLGMVARNCDGEVMASACSSPVSISSPLLAEALGLRWTM 131
>AV780577
Length = 486
Score = 36.6 bits (83), Expect = 0.003
Identities = 25/66 (37%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Frame = +2
Query: 125 PSRWKRPATRAVKVNL-DARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPLLAEAL 183
PS W P +K+N+ D V M G V RD N VL + +S LS + EAL
Sbjct: 227 PSTWWPPPHGKLKINIVDVVVPQVDMMGFGFVMRDANGLVLVSGASKHRRSLSVAMGEAL 406
Query: 184 SLRWSM 189
+ RW+M
Sbjct: 407 A*RWAM 424
>TC10764
Length = 555
Score = 35.4 bits (80), Expect = 0.006
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 141 DARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPLLAEA 182
D V + G L+A D EVL ATS++P +L PL+AEA
Sbjct: 79 DVSVVEHLDVGFGLLAGDHEGEVLAATSAFPLSVLPPLIAEA 204
>BP032481
Length = 447
Score = 25.8 bits (55), Expect(2) = 0.080
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -2
Query: 177 PLLAEALSLRWSM 189
PLLAEA+S+RW M
Sbjct: 353 PLLAEAMSMRWIM 315
Score = 24.6 bits (52), Expect(2) = 0.080
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 147 GSMAGLVLVARDENEEVLEATSSYP 171
G + G+ +VAR+ +V+ T S+P
Sbjct: 442 GGLGGMGMVARNSEGDVMATTCSFP 368
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 31.6 bits (70), Expect = 0.090
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Frame = -3
Query: 69 EVLAAVQTMLYAIWESQNGLVFQ-------RMSFDMGWVLAWAVALGSGWVRVHESPHAG 121
E LA + L+AIW+++N ++FQ F + + A + + +
Sbjct: 1005 EDLATLSFTLWAIWKNRNRVIFQLEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTRERN 826
Query: 122 RELPS----RWKRPATRAVKVNLDARVHDGSMAGLV-LVARDENEEVLEATSSYPWPILS 176
+ S W+ P K+N DA S + V +V RD ++ T+S P S
Sbjct: 825 INVTSARDRSWRPPPLGVYKLNSDASWKAPSPSCTVGVVIRDNLGLLISGTASRPL-APS 649
Query: 177 PLLAEALSLR 186
P+++EAL+LR
Sbjct: 648 PIVSEALALR 619
>BP071404
Length = 394
Score = 31.2 bits (69), Expect = 0.12
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = -2
Query: 163 VLEATSSYPWPILSPLLAEALSLRWSM 189
+L A S Y P L PL+AEA ++WSM
Sbjct: 390 LLVAASYYAGPSLDPLVAEAACMKWSM 310
>AV418280
Length = 398
Score = 31.2 bits (69), Expect = 0.12
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Frame = -2
Query: 13 DPGCAICGNEVETMEHLFLEFPMFLGVWFA------SSLSLRVNLFATVEDF--VSEMVR 64
D C C E HLF +GVW A S++L + A F +
Sbjct: 397 DLTCPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLANFAQFSITARNKN 218
Query: 65 EGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR 113
+ + E+ + T ++++W +N ++F+ + D ++L + W++
Sbjct: 217 QRLGELAIWIAT-VWSLWIQRNSIIFRNNALDHSYLLDLIQSRSWHWLK 74
>TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-cell
leukemia, homeobox 1), partial (5%)
Length = 1304
Score = 29.6 bits (65), Expect = 0.34
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 93 MSFDMGWVLAWAVALGSGWVRVHESPHAGRELPSR 127
++ D + W +G W +VHE GRELP R
Sbjct: 888 VAVDSSQLATWRDPIGVRWNQVHEEVVPGRELPRR 992
>TC13242
Length = 567
Score = 29.3 bits (64), Expect = 0.45
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = +1
Query: 147 GSMAGLVLVARDENEEVLEATSSYPWPILSPLLAEALSLRWSM 189
G G +V RD + E + A + Y + +AEA +LRW++
Sbjct: 364 GRGQGAAMVVRDHHGECMYAATEYFTAQVEATMAEAKALRWTL 492
>TC11869
Length = 753
Score = 28.5 bits (62), Expect = 0.76
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +1
Query: 86 NGLVFQRMSFDMGWVLAWAVALGSGWVRVHESPHAGRELPSRWKRPATRAVKVNLDARVH 145
+G V Q+ V L S V +S H LPS P ++K+N+DA V
Sbjct: 43 SGFVIQQTLQVAHMVTVIPTLLASRVAAVSDSAH----LPSS*MPPPAGSIKINIDASVE 210
Query: 146 DGSMAGLVLVAR---DENEEVLEATSSYPWPILSPLLAEALSLRWSM 189
+ + V R D + + W +++ AEAL+LRW+M
Sbjct: 211 E*LIRV*VW*ERTILDYC*QQIHINRGALWIVITD-TAEALALRWAM 348
>AV780250
Length = 494
Score = 27.3 bits (59), Expect = 1.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 2 RSALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFA 42
RSAL R ++VD C C E+ + L P+ WFA
Sbjct: 372 RSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWFA 494
>AV780445
Length = 504
Score = 26.9 bits (58), Expect = 2.2
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 13/94 (13%)
Frame = +1
Query: 81 IWESQNGLVFQRMSFDMGWVL--AWA---------VALGSGWVRVHESPHAGRELPSRWK 129
+W+ +N +VF+ D W + AW + G ++ G L SRW+
Sbjct: 244 VWKWRNNMVFE----DSPWSVDEAWRKLGHEHDEFITFSDG-----DAGDPGSWLSSRWQ 396
Query: 130 RPATRAVKVNLD--ARVHDGSMAGLVLVARDENE 161
P VK+N+D R D M L+ D+ +
Sbjct: 397 PPRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGK 498
>TC10037
Length = 560
Score = 26.6 bits (57), Expect = 2.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = -3
Query: 1 MRSALIQRKVEVDPG-------CAICGNEVETMEHLFLEFPMFLGVWFAS 43
+RS ++ RK + G C C ETM+H + P VWFAS
Sbjct: 453 LRSIVLTRKRLWNKGAVVPTIFCLRCDRLEETMDHALRDCP*ARRVWFAS 304
>AV411435
Length = 426
Score = 25.8 bits (55), Expect = 4.9
Identities = 14/46 (30%), Positives = 19/46 (40%)
Frame = +3
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVN 50
L +R + D C IC E + H L VWF L+ V+
Sbjct: 258 LKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVWFGCPLNFVVH 395
>AW164087
Length = 369
Score = 25.8 bits (55), Expect = 4.9
Identities = 10/35 (28%), Positives = 20/35 (56%)
Frame = -3
Query: 95 FDMGWVLAWAVALGSGWVRVHESPHAGRELPSRWK 129
+++GW +A + LGSG VH + + + +W+
Sbjct: 259 YELGWAIAGTIELGSG--LVHTLMDSRKLMEQKWR 161
>BP085802
Length = 315
Score = 25.4 bits (54), Expect = 6.4
Identities = 17/52 (32%), Positives = 24/52 (45%)
Frame = +3
Query: 130 RPATRAVKVNLDARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPLLAE 181
RPAT + R + VL ++VL+ATS+ PW LLA+
Sbjct: 120 RPATMKKVIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGSLLAD 275
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,263
Number of Sequences: 28460
Number of extensions: 48280
Number of successful extensions: 260
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of query: 189
length of database: 4,897,600
effective HSP length: 85
effective length of query: 104
effective length of database: 2,478,500
effective search space: 257764000
effective search space used: 257764000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0011b.6