TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0011a.2
         (391 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    38  0.003
TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5...    36  0.013
BP037854                                                               28  2.6
BP047782                                                               28  2.6
TC10208 weakly similar to UP|Q8TUQ7 (Q8TUQ7) TraB family protein...    28  3.4
TC10859                                                                27  5.8
BP035341                                                               27  7.6
TC11056 similar to UP|O81390 (O81390) Calcium-dependent protein ...    26  10.0

>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
 Frame = +3

Query: 29  TNPVYTEEQFQRRYRMRKHMFLRIVEAISNTDDYFQMRNDATGRMGLSPLQKQTAAIRML 88
           ++P + EE+F+R +RM K  F    E I    D    + +   R  +   Q+    I  L
Sbjct: 357 SHPDFPEEEFRRSFRMSKATF----EMICRELDSAVTKKNTMLREAIPVRQRVAVCIWRL 524

Query: 89  AYGSSTDSVDEYVCIGESTARKCMARFVKGINEVFGPEYLRKTNNKDI-ARLMELGKARG 147
           A G     V +   +G ST  K +      I  V  P++LR  +   + A   E     G
Sbjct: 525 ATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDEAAMTAAKSEFEALSG 704

Query: 148 FPGMLGSIDCMH 159
            P + G++   H
Sbjct: 705 IPNIGGAMYTTH 740


>TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980),
           partial (16%)
          Length = 577

 Score = 35.8 bits (81), Expect = 0.013
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +2

Query: 267 RKLFAQHQEGARKDVERAFGVL*SRFAIVRGPARAWHLHILKDIIYACIILHNMIVEDER 326
           ++LF       R  + R+F VL +RF I+  PA  +   I +DI+ A  +LHN+I  ++R
Sbjct: 5   KELFNHRHYFLRGAILRSFTVLKARFPILI-PAPQYSFQIQRDIVIAACVLHNIIRREDR 181


>BP037854 
          Length = 462

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 183 IILEAIASQDLWIWHAFFGVA 203
           +I  ++ + DLW W  FFG A
Sbjct: 282 LIFSSVLALDLWFWELFFGTA 220


>BP047782 
          Length = 479

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 89  AYGSSTDSVDEYVCIGESTARKCMA 113
           AY S +DS+  YV +GES  ++ MA
Sbjct: 105 AYLSLSDSISSYVSVGESLCKQLMA 179


>TC10208 weakly similar to UP|Q8TUQ7 (Q8TUQ7) TraB family protein, partial
           (4%)
          Length = 566

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = +1

Query: 320 MIVEDEREMCDGNIDFSYDQLENDASTPE 348
           +I+  ERE+ +  +DFS+   +N  S+PE
Sbjct: 304 IILTSEREL*ERLVDFSFSAFQNSMSSPE 390


>TC10859 
          Length = 533

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 320 MIVEDEREMCDGNIDFSYDQLENDASTPEV 349
           +I+  ERE+ +  +DF +   +N  S+PE+
Sbjct: 342 VILSSEREL*ERLVDFRFSSFQNSMSSPEL 431


>BP035341 
          Length = 523

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (52%)
 Frame = -3

Query: 219 NDVLQGKAPEVQFTLNGTTYNMGYYLADEIYPEWATFVKTISMPQGE 265
           NDV   +A       NG+T +MGY+L + ++P  A     +++  G+
Sbjct: 479 NDVFASQAH------NGSTDSMGYFLGEVLFPYHAESEVELNLSAGD 357


>TC11056 similar to UP|O81390 (O81390) Calcium-dependent protein kinase ,
           partial (22%)
          Length = 675

 Score = 26.2 bits (56), Expect = 10.0
 Identities = 14/51 (27%), Positives = 23/51 (44%)
 Frame = -2

Query: 290 SRFAIVRGPARAWHLHILKDIIYACIILHNMIVEDEREMCDGNIDFSYDQL 340
           + F IV  P     +H+    +Y C I H+M       +C G++ F Y  +
Sbjct: 347 TEFLIVYSPIIVC-IHLRNYFLYRCFITHSM-------LCHGSLQFIYSNM 219


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,664,113
Number of Sequences: 28460
Number of extensions: 88138
Number of successful extensions: 434
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of query: 391
length of database: 4,897,600
effective HSP length: 92
effective length of query: 299
effective length of database: 2,279,280
effective search space: 681504720
effective search space used: 681504720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)