BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.8
(430 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19706 124 4e-29
TC11535 similar to AAS10009 (AAS10009) MYB transcription factor,... 42 2e-04
TC13276 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding fa... 36 0.011
BP037888 31 0.34
TC8259 similar to UP|HMGL_SOYBN (P26585) HMG1/2-like protein (SB... 30 0.59
AV408295 30 0.59
TC11613 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), pa... 29 1.3
AV767342 28 2.2
TC17610 weakly similar to UP|Q9LYL0 (Q9LYL0) N2, N2-dimethylguan... 28 2.2
TC7843 weakly similar to GB|AAF03412.1|6090963|AF188712 mitochon... 28 2.2
AV766986 28 2.2
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 28 2.2
BP037565 28 2.9
TC16180 similar to PIR|T46192|T46192 acetylglutamate kinase-like... 28 2.9
AV767473 28 2.9
TC18050 28 2.9
BP058236 28 2.9
AV767866 28 3.8
CB829546 28 3.8
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 28 3.8
>TC19706
Length = 491
Score = 124 bits (310), Expect = 4e-29
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +3
Query: 370 RKRDEGVKGSILAVTVKGKRPPKSGCLLNPSPSPIRVGQAQVVQRRSWALLVLGLAGNKK 429
RKRDEGVKGSILAVTVKGKRPPKSGCLLNPSPSPIRVGQAQVVQRRSWALLVLGLAGNKK
Sbjct: 3 RKRDEGVKGSILAVTVKGKRPPKSGCLLNPSPSPIRVGQAQVVQRRSWALLVLGLAGNKK 182
Query: 430 K 430
K
Sbjct: 183 K 185
>TC11535 similar to AAS10009 (AAS10009) MYB transcription factor, partial
(17%)
Length = 559
Score = 42.0 bits (97), Expect = 2e-04
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +3
Query: 61 AAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSATVTV 107
AAA A A EE AA+ EA RE AAEAE +AAE + Q+A T+
Sbjct: 42 AAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTM 182
>TC13276 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding factor 2,
partial (21%)
Length = 579
Score = 36.2 bits (82), Expect = 0.011
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 54 ERYEAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSA 103
+R A+ AAAA A A E AV + A RE AAEAE +AA+ + ++A
Sbjct: 35 KRMTAQEAAAAAAKAVVEAELAVAQAEAAAREAEAAEAEAEAAQVFAKAA 184
>BP037888
Length = 522
Score = 31.2 bits (69), Expect = 0.34
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -2
Query: 350 LVTANRPPAKPPDS 363
LVTA RPPAKPPDS
Sbjct: 476 LVTAQRPPAKPPDS 435
>TC8259 similar to UP|HMGL_SOYBN (P26585) HMG1/2-like protein (SB11
protein), partial (92%)
Length = 942
Score = 30.4 bits (67), Expect = 0.59
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 22 AARRREEVRQGEEA--AAAYERHVAEYEQYMAAYERYEAKAAAAAVAMAEEENAAAVERE 79
A + + + + E+A A E+ A+YE+ M AY + +A+ AAA EEE+ +V
Sbjct: 410 AGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAEGPAAA---DEEESEKSVSEV 580
Query: 80 VEAERERAAAEAEED 94
+ + + ++ ++D
Sbjct: 581 NDQDEDDDDSDEDDD 625
>AV408295
Length = 426
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/91 (29%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 8 ALDRLDESLKRSHEAARRREEVRQGEEAAAAYERHVAEYEQYMAAYERYEAKAAAAAVAM 67
AL++ + S +A E ++ E AAAA E V E E+ E+ A+ +
Sbjct: 84 ALNKHELSAPPPPKAPSPSTEAKKDEVAAAATEEKVEEEEEKKTEEEKKPAEEEKKE-EV 260
Query: 68 AEEEN-AAAVEREVEAERERAAAEAEEDAAE 97
EEE A E++ EAE E + E++ E
Sbjct: 261 VEEEKKPAEEEKKAEAEGEATTSGEEKNVVE 353
>TC11613 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), partial (26%)
Length = 731
Score = 29.3 bits (64), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 381 LAVTVKGKRPPKSGCLLNPSPS 402
L VT+ + PP S C+L+PSPS
Sbjct: 581 LFVTIS*RFPPPSSCMLSPSPS 516
>AV767342
Length = 490
Score = 28.5 bits (62), Expect = 2.2
Identities = 17/39 (43%), Positives = 20/39 (50%)
Frame = +1
Query: 171 LSGGVLGDYGGDSAIDGAGRPPRKPPDSFFCSGELCFLV 209
L G GD+G + A D G D+F SGELC LV
Sbjct: 169 LKGTPFGDHGIECAFDTDGT------DAFIFSGELCALV 267
>TC17610 weakly similar to UP|Q9LYL0 (Q9LYL0) N2, N2-dimethylguanosine tRNA
methyltransferases-like protein, partial (23%)
Length = 628
Score = 28.5 bits (62), Expect = 2.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 92 EEDAAEKYEQSATVTVFFGSSKAFSFGFLNKSCV 125
EE +A K + + FFG++ AFS G + C+
Sbjct: 362 EESSAPKSRRDRNLQ*FFGNTNAFSHGAIRLDCI 261
>TC7843 weakly similar to GB|AAF03412.1|6090963|AF188712 mitochondrial
dicarboxylate carrier {Mus musculus;} , partial (22%)
Length = 1594
Score = 28.5 bits (62), Expect = 2.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 389 RPPKSGCLLNPSPSPIRVGQAQVVQRRSWALL 420
RPP L +P P+R QA+VVQRR A L
Sbjct: 551 RPPSDAVLHHPH-GPLRHPQAEVVQRRKHAAL 643
>AV766986
Length = 541
Score = 28.5 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = -2
Query: 215 PVLCVLIDLFQIDDLGVTEWFQLSNSRLLG 244
P C+LI+ + + DLG W ++S L+G
Sbjct: 441 PAACILINTYLLIDLGAATWLRVSVWLLIG 352
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/58 (32%), Positives = 25/58 (42%)
Frame = +1
Query: 44 AEYEQYMAAYERYEAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQ 101
AE ++Y E E + EEE E E E E E AEAEE+ E ++
Sbjct: 181 AEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEE-EEEEEEVEAEAEEEDDEPIQK 351
>BP037565
Length = 433
Score = 28.1 bits (61), Expect = 2.9
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 350 LVTANRPPAKPPDS 363
LVT +PPAKPPDS
Sbjct: 411 LVTTKQPPAKPPDS 370
>TC16180 similar to PIR|T46192|T46192 acetylglutamate kinase-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(41%)
Length = 635
Score = 28.1 bits (61), Expect = 2.9
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = -1
Query: 275 PPRQPPDFFLCGEDLCFLAADSCKPLVKDVRPPQKPPDVSICDGAPVMATRPP 327
PP QPP G C+ AA + P P PP+ C A PP
Sbjct: 155 PPAQPPTLRPPGPH*CYTAARTHPP------PRTSPPECGCCQSATGELQGPP 15
>AV767473
Length = 374
Score = 28.1 bits (61), Expect = 2.9
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +2
Query: 4 DWWKALDRLDESLKRSHEAARRREEVRQGEEAAAAYERHVAE 45
+W LD LDE+L RRE VR GE AAY+ A+
Sbjct: 122 NWKGMLDPLDENL--------RREVVRYGEFVQAAYQAFHAD 223
>TC18050
Length = 695
Score = 28.1 bits (61), Expect = 2.9
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Frame = +1
Query: 343 YAGESWQLVTANRPPAKPPDSTKDGR----------GRKRDEGVKGSILAVTVKGKRPPK 392
+ E + + RPP PP KD +KR E +K SI + KGK K
Sbjct: 268 WGDEQSAMGASKRPPPPPPKEKKDPNVSGVQAKVMASKKRKEAMKESIAKLREKGKSINK 447
Query: 393 SGCLLNPSP 401
L P+P
Sbjct: 448 E---LPPAP 465
>BP058236
Length = 500
Score = 28.1 bits (61), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 201 CSGELCFLVADSWRPVLCVLI 221
C G L +L + SW+P LC+ I
Sbjct: 134 CFGSLTYLTSISWKPGLCICI 72
>AV767866
Length = 366
Score = 27.7 bits (60), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 306 PPQKPPDVSICDGAPVMATRPP 327
PP+KPP S+ PV+ +R P
Sbjct: 222 PPKKPPITSVTSNLPVLPSRTP 287
>CB829546
Length = 550
Score = 27.7 bits (60), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 357 PAKPPDSTKDGRGRKRDEGVKGSILAVTVKGKRPPK 392
P KP +STK+ + +KR + KG+R PK
Sbjct: 270 PTKPCESTKENKQQKRGNADSLVGFGIEEKGRRSPK 163
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 27.7 bits (60), Expect = 3.8
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -2
Query: 171 LSGGVLGDYGGDSAIDGAG 189
++GGV GD GG A+DG G
Sbjct: 279 VAGGVHGDVGGGDAVDGFG 223
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,394,374
Number of Sequences: 28460
Number of extensions: 150751
Number of successful extensions: 1044
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of query: 430
length of database: 4,897,600
effective HSP length: 93
effective length of query: 337
effective length of database: 2,250,820
effective search space: 758526340
effective search space used: 758526340
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0010.8