BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.7
(564 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8990 homologue to UP|SR52_LYCES (P49972) Signal recognition pa... 86 2e-17
BP073359 33 0.12
AV409261 30 0.80
TC19760 weakly similar to UP|CPR2_PETCR (Q99090) Light-inducible... 30 1.4
TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine ... 29 2.3
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 29 2.3
TC18261 similar to UP|WSC2_YEAST (P53832) Cell wall integrity an... 29 2.3
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 28 3.0
TC8913 similar to UP|Q7XYW2 (Q7XYW2) Seed specific protein Bn15D... 28 3.0
BP033927 28 4.0
AW719845 28 4.0
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin... 28 5.2
AV781319 28 5.2
AV416122 27 6.8
AV770446 27 6.8
BP052474 27 6.8
TC17197 UP|RPOC_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta'... 27 6.8
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 27 6.8
AV779068 27 8.8
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact... 27 8.8
>TC8990 homologue to UP|SR52_LYCES (P49972) Signal recognition particle 54
kDa protein 2 (SRP54), partial (50%)
Length = 1141
Score = 85.5 bits (210), Expect = 2e-17
Identities = 42/124 (33%), Positives = 66/124 (52%)
Frame = +3
Query: 326 KLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQ 385
K+DG ++GG ALS + P+ +G GE MD+ E F R+LGMGD+ F++K Q
Sbjct: 3 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQ 182
Query: 386 EVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAE 445
EV+ + +L +K+ F +Q + + +MG + +V M+PG S + RE E
Sbjct: 183 EVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKE 362
Query: 446 KNLK 449
K
Sbjct: 363 SQAK 374
>BP073359
Length = 388
Score = 33.1 bits (74), Expect = 0.12
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 11 STPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISS----RNSFTKEIWGWVQAKSVAV 65
S+ T SSS + +V SSS S +S+ SS W+ I R+S K+ GW KSV+V
Sbjct: 154 SSSTVSSSSSSSVSSSSSS-SSVSTSSGWSTRPIKRIVPLRSSLIKKRKGWSATKSVSV 327
>AV409261
Length = 355
Score = 30.4 bits (67), Expect = 0.80
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 6 ASRHFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNAS 43
++R TPT +SS + T +S P+P++ L+SP T+ S
Sbjct: 170 STRASLTPTTTSSSSLTTSTSPPTPSTSPLASPATSPS 283
>TC19760 weakly similar to UP|CPR2_PETCR (Q99090) Light-inducible protein
CPRF-2, partial (21%)
Length = 573
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Frame = -2
Query: 532 APPGTARRRKRSEQ--------RSLFADSAARPTPRGFGS 563
A PG+ R+R R ++ R L SA RPT GFGS
Sbjct: 248 ADPGSRRKRHRQQRMMQKVERRRKLPGGSAGRPTRNGFGS 129
>TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine P1
{Caenolestes fuliginosus;} , partial (49%)
Length = 1266
Score = 28.9 bits (63), Expect = 2.3
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +2
Query: 6 ASRHFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASIS----SRNSFTKEIWGWVQ-- 59
+S P ++SH+ + + +L +SSPW N+ + S + +WG +
Sbjct: 467 SSSESGEPLRTTSHHGAKSTRATGVAALGISSPWRNSPAATAS*SYGTPLDSVWG*ISMI 646
Query: 60 AKSVAVRRRRDMPGVVRAEMFGQLTTGLEAAW 91
+ V RRR +P R +F QL W
Sbjct: 647 TRKVHSTRRRVLPRRPRRWLF-QLRKAHAGTW 739
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 28.9 bits (63), Expect = 2.3
Identities = 17/39 (43%), Positives = 25/39 (63%)
Frame = -3
Query: 11 STPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNS 49
S P+ SSS + + SSSPS +S SS +++S SS +S
Sbjct: 382 SLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSS 266
>TC18261 similar to UP|WSC2_YEAST (P53832) Cell wall integrity and stress
response component 2 precursor, partial (5%)
Length = 538
Score = 28.9 bits (63), Expect = 2.3
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +3
Query: 11 STPTHSSSHNR-----TVCSSSPSPNSLKLSSPWTNASISS 46
+T T SSS N + SSSPSP+S+K + P + AS +S
Sbjct: 261 TTSTSSSSPNSRSSAASASSSSPSPSSVKTTVPGSTASNTS 383
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 11 STPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNS 49
S+ T SSS + SSS S +S SS W++ S SS +S
Sbjct: 316 SSSTPSSSSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSS 432
Score = 26.9 bits (58), Expect = 8.8
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +1
Query: 11 STPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNSFTKEIW 55
S + SSS + + SSS +P+S SSP +++S SS +S + W
Sbjct: 271 SASSSSSSSSSSSLSSSSTPSS-SSSSPPSSSSSSSSSSSSSSSW 402
>TC8913 similar to UP|Q7XYW2 (Q7XYW2) Seed specific protein Bn15D17A,
partial (53%)
Length = 615
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Frame = +1
Query: 536 TARRRKRSEQRSLFAD------SAARPTPRG 560
++RRR RSE+R +AD ARPTP+G
Sbjct: 394 SSRRRSRSERRPDYADHF*SRRQRARPTPQG 486
>BP033927
Length = 493
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = +2
Query: 401 MSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNLKNMEAMIEAMTP 460
M+A F ++ + S ++ IP + P R ++++ K++ +
Sbjct: 38 MAAATPTKSFKSPSKPNLRSQSTAKPSPSIPATPQSLPPLPRRSKRSSKSLTFDSPKASH 217
Query: 461 EEREKPELLAESPVRRKRVAQESGK 485
+ E E E+P RRK +ESG+
Sbjct: 218 QGAESSEFRLETPRRRKTSVEESGE 292
>AW719845
Length = 209
Score = 28.1 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +3
Query: 170 ELAFAKSGTTVILLAGLQGVGKTTVCA 196
++ K G +V+ + GL G+GKTT+ A
Sbjct: 15 KMELLKDGVSVVAVTGLGGLGKTTLAA 95
>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
(At5g24020), partial (45%)
Length = 470
Score = 27.7 bits (60), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 180 VILLAGLQGVGKTTVCAKLSNYLKKQGKSCMLVAGDI 216
V++ +G GVGKTT A + L + G S + + D+
Sbjct: 77 VVVTSGKGGVGKTTTTANMGLSLARLGFSVVAIDADV 187
>AV781319
Length = 524
Score = 27.7 bits (60), Expect = 5.2
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 175 KSGTTVILLAGLQGVGKTTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTI 227
+ G VILL G KT C +NY +K+G+S ++ D + + LT+
Sbjct: 67 RRGLNVILLNG-----KTKKCIGSNNYPRKKGRSFLMFIWDAGKDLTLIILTV 210
>AV416122
Length = 414
Score = 27.3 bits (59), Expect = 6.8
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -3
Query: 16 SSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNSFTKEIWGWVQAKSVA 64
SSS + + SSS S +S SSP S+S S GW + SVA
Sbjct: 367 SSSSSSSSSSSSLSSSSSSSSSPSNWTSLSGSLSSLAASLGWEEQSSVA 221
>AV770446
Length = 308
Score = 27.3 bits (59), Expect = 6.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 28 PSPNSLKLSSPWTNASISSRNSFTKEIWGWVQA 60
PS N KL S SI ++S E+WGW++A
Sbjct: 14 PSQNPSKLFSGNGVNSILRKSSSLIEVWGWLRA 112
>BP052474
Length = 504
Score = 27.3 bits (59), Expect = 6.8
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +2
Query: 15 HSSSHNRTVCSSSPSPNSLKLSSPWTNASISS 46
HSSS + S+P+P+S + SS T AS SS
Sbjct: 122 HSSSFSHGFLHSTPNPSSPRASSLATTASSSS 217
>TC17197 UP|RPOC_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain
(PEP) (Plastid-encoded RNA polymerase beta' subunit)
(RNA polymerase beta' subunit) , partial (84%)
Length = 1728
Score = 27.3 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = -2
Query: 8 RHFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNS 49
+ F PT SSH+ ++C SPNS ++ + + SR++
Sbjct: 734 KFFLLPTFRSSHSFSLCVDLSSPNSFHSTNEESITILKSRST 609
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 27.3 bits (59), Expect = 6.8
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 6 ASRHFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNSFT 51
A+ +TP SSS + + S +PSP+S SSP ++ SS +S T
Sbjct: 254 ATSSATTPWSSSSSSSSPSSGTPSPSS--SSSPSSSPGSSSSSSAT 385
>AV779068
Length = 565
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 111 DIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVKPDQQLVKIVHEELVKL 163
DIR +L + V++P +R + + +KP+ +L ++H+E V L
Sbjct: 371 DIREGVLTSRVTVPSIRMAMSKI------------LKPNPELANLIHKECVGL 249
>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
(PRP18 homolog) (hPRP18), partial (8%)
Length = 563
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 12 TPTHSSSHNR-----TVCSSSPSPNSLKLSSPWTNAS 43
T T SSS N+ + SSSPSP+S K ++P + S
Sbjct: 283 TSTTSSSLNKKSSAASASSSSPSPSSAKTTTPGSTVS 393
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.130 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,740,271
Number of Sequences: 28460
Number of extensions: 81270
Number of successful extensions: 682
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of query: 564
length of database: 4,897,600
effective HSP length: 95
effective length of query: 469
effective length of database: 2,193,900
effective search space: 1028939100
effective search space used: 1028939100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0010.7