TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0010.2
         (370 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV417593                                                              213  4e-56
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    87  4e-18
TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribos...    72  1e-13
TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...    69  1e-12
TC14208 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...    59  1e-09
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    53  7e-08
BP047377                                                               53  9e-08
TC10291 similar to UP|Q9ASP6 (Q9ASP6) AT4g00830/A_TM018A10_14, p...    52  1e-07
TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p...    50  6e-07
BI419822                                                               49  1e-06
BP036697                                                               48  2e-06
TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding prot...    47  5e-06
TC16457 similar to UP|Q41124 (Q41124) Chloroplast RNA binding pr...    47  7e-06
AV411398                                                               46  9e-06
TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor S...    46  1e-05
TC19344 weakly similar to GB|AAA34838.1|172092|YSCPABPG polyaden...    45  1e-05
AV409413                                                               45  2e-05
TC16529 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    45  2e-05
TC12531 similar to UP|Q9ASQ8 (Q9ASQ8) At1g22910/F19G10_13, parti...    44  3e-05
TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotei...    44  4e-05

>AV417593 
          Length = 423

 Score =  213 bits (542), Expect = 4e-56
 Identities = 96/139 (69%), Positives = 122/139 (87%)
 Frame = +2

Query: 117 WTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKL 176
           W  ED++K V + GPGV ++EL+KD+++   NRGFAFI+YYNHACAE+SRQKM +  FKL
Sbjct: 5   WGEEDLRKTVTEAGPGVTAVELVKDVKNINNNRGFAFIDYYNHACAEHSRQKMMSPTFKL 184

Query: 177 ENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKS 236
            +NAPTVSWA+P+N++SSA SQVKAVYVKNLP+N+TQ+ ++KLFEHHGKITKVVLPP KS
Sbjct: 185 GDNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQVRKLFEHHGKITKVVLPPPKS 364

Query: 237 GQEKSRFGFVHFSDRSSAM 255
           GQEK+R GFVHF++RS+AM
Sbjct: 365 GQEKNRIGFVHFAERSNAM 421


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (85%)
          Length = 1917

 Score = 87.0 bits (214), Expect = 4e-18
 Identities = 74/302 (24%), Positives = 137/302 (44%), Gaps = 26/302 (8%)
 Frame = +2

Query: 25  SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
           +  ++I  +   +  + L     + G +   ++     SG+ KGY FV F+T+E A  AI
Sbjct: 89  AGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVA-TDSSGQSKGYGFVQFETEEAAQNAI 265

Query: 85  EELNNSEFKGKKI-----------KCSSSQAK-HRLFIGNIPKKWTVEDMKKVVADVGPG 132
           E+LN      K++           + S+ +AK + +F+ N+ +  T +++K V  + G  
Sbjct: 266 EKLNGMLLNDKQVYVGPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGT- 442

Query: 133 VISIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNF-------KLENNA 180
           + S  +++D    G+++ F F+ + N      A    + +K+ +  +       K E   
Sbjct: 443 ITSAVVMRD--GDGKSKCFGFVNFENADDAARAVESLNGKKVDDKEWYVGKAQKKSEREQ 616

Query: 181 PTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEK 240
              +  E    E++   Q   +YVKNL ++I  + LK+LF  +G IT   +    +G  +
Sbjct: 617 ELKNKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISR 796

Query: 241 SRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRS--SGTSNSQKPVVLPT 298
              GFV FS    A +AL       +  K L  +LA+ + D+R+         +PV +P 
Sbjct: 797 GS-GFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPP 973

Query: 299 YP 300
            P
Sbjct: 974 AP 979


>TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribosomal
           protein 2, chloroplast precursor (PSRP-2), partial (68%)
          Length = 1104

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
 Frame = +2

Query: 100 SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFI----- 154
           + S+A  RL++GNIP+  T +++  +V +    V   E++ D + SGR+R FAF+     
Sbjct: 212 TQSEADRRLYVGNIPRTLTNDELANIVQEHA-AVEKAEVMYD-KYSGRSRRFAFVTVKTV 385

Query: 155 EYYNHACAEYSRQKMSNSNFKL---ENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENI 211
           E  N A  + +  ++     K+   E    TV +   +  ES  V     VYV NL + +
Sbjct: 386 EDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTV 565

Query: 212 TQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNL 271
           T D LK  F   GK+    +       + S FGFV FS       A+ +     ++G+ +
Sbjct: 566 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKI 745

Query: 272 ECSLA 276
             + A
Sbjct: 746 RVNKA 760



 Score = 59.7 bits (143), Expect = 8e-10
 Identities = 38/165 (23%), Positives = 82/165 (49%), Gaps = 20/165 (12%)
 Frame = +2

Query: 28  VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
           +Y+G I   ++ ++L    Q    V +  +M  K SG  + +AFV  KT E A+ AIE+L
Sbjct: 236 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 415

Query: 88  NNSEFKGKKIKCSSSQ--------------------AKHRLFIGNIPKKWTVEDMKKVVA 127
           N ++  G++IK + ++                    + +++++GN+ K  T + +K   +
Sbjct: 416 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 595

Query: 128 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS 172
           + G  V+S ++ + +  + ++ GF F+ + +    E +    +N+
Sbjct: 596 EKGK-VLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 724


>TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (77%)
          Length = 1576

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 68/345 (19%), Positives = 141/345 (40%), Gaps = 30/345 (8%)
 Frame = +3

Query: 11  EKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYA 70
           ++ +HA+  + P     ++IG +   + E  L       GE++ V++++ K + + +GY 
Sbjct: 291 QQHQHAQP-STPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYG 467

Query: 71  FVAFKTKELASQAIE--------------ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKK 116
           F+ F ++  A + ++               LN + F     +       + +F+G++   
Sbjct: 468 FLEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAAD 647

Query: 117 WTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKM------- 169
            T   + +V       V   +++ D  +S R +G+ F+ + + +    +  +M       
Sbjct: 648 VTDYHLTEVFRTRYNSVKGAKVVIDRLTS-RTKGYGFVRFADESEQVRAMTEMQGVVCST 824

Query: 170 --------SNSNFKLENNA-PTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLF 220
                   +N N        P  S+   +  ++        ++V NL  N+T D L+++F
Sbjct: 825 RPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVF 1004

Query: 221 EHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEA 280
             +G +  V +P  K      R GFV F+DRS A +AL+      + G+N+  S  +  +
Sbjct: 1005GLYGDLVHVKIPQGK------RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPS 1166

Query: 281 DQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAGFA 325
           ++++               P +      G  Y G   GY   G+A
Sbjct: 1167NKQTQSD------------PSQWNNSAGGAGYYGYAQGYENYGYA 1265


>TC14208 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (41%)
          Length = 837

 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 39/138 (28%), Positives = 65/138 (46%)
 Frame = +2

Query: 188 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 247
           P+ S++        ++V NL  N+  D L+++F  +G++  V +P  K      R GFV 
Sbjct: 155 PQGSQNENDPSNTTIFVGNLDPNVNDDHLRQVFSPYGELVHVKIPAGK------RCGFVQ 316

Query: 248 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGYGM 307
           F+DRS A +AL+      + G+N+  S  +  +++++   SN               Y  
Sbjct: 317 FADRSGAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDSNQ--------------YAA 454

Query: 308 VGGAYGGIGAGYGAAGFA 325
            GG Y G G GY   G+A
Sbjct: 455 AGGYY-GYGQGYENYGYA 505


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 53.1 bits (126), Expect = 7e-08
 Identities = 23/77 (29%), Positives = 43/77 (54%)
 Frame = +1

Query: 29  YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELN 88
           ++GG+A       L     S GE+ + +++  +E+G  +G+ FV F ++E    AIE +N
Sbjct: 91  FVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMN 270

Query: 89  NSEFKGKKIKCSSSQAK 105
            +E  G+ I  + +QA+
Sbjct: 271 GNELDGRNITVNEAQAR 321



 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 38/141 (26%), Positives = 61/141 (42%), Gaps = 8/141 (5%)
 Frame = +1

Query: 191 SESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT-KVVLPPAKSGQEKSRFGFVHFS 249
           S+S+        +V  L       +L++ F  +G+I    V+   ++G+ +  FGFV F+
Sbjct: 55  SDSAMADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRG-FGFVTFT 231

Query: 250 DRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYP-----HRLG 304
              +   A++     E+DG+N+  +    EA  R  G     +      Y         G
Sbjct: 232 SEEAMRSAIEGMNGNELDGRNITVN----EAQARGGGGGGGGRGG--GGYGGGGGRREGG 393

Query: 305 YGMVGGA--YGGIGAGYGAAG 323
           YG  GG+  YGG G GYG  G
Sbjct: 394 YGGGGGSRGYGGGGGGYGGGG 456


>BP047377 
          Length = 564

 Score = 52.8 bits (125), Expect = 9e-08
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +3

Query: 28  VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
           V++G I  + +EE L   CQ VG V   R++  +E+G+ KGY F  +K +E A  A   L
Sbjct: 135 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 314

Query: 88  NNSEFKGKKIK 98
              E  G++++
Sbjct: 315 QGYEINGRQLR 347



 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
 Frame = +3

Query: 185 WAEPRNSESSAV-------SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSG 237
           W+   +  SSAV       SQ + V+V N+P + T++ L ++ +  G +    L   +  
Sbjct: 63  WSSRASPSSSAVDFMASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRET 242

Query: 238 QEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 277
            +   +GF  + D  +A+ A +N + YEI+G+ L    A+
Sbjct: 243 GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 362



 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 29/89 (32%), Positives = 53/89 (58%), Gaps = 1/89 (1%)
 Frame = +3

Query: 100 SSSQAKHR-LFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYN 158
           +SSQ++HR +F+GNIP   T E + ++  +VGP V+S  L+ D + +G+ +G+ F EY +
Sbjct: 108 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGP-VVSFRLVID-RETGKPKGYGFCEYKD 281

Query: 159 HACAEYSRQKMSNSNFKLENNAPTVSWAE 187
              A  +R+ +    +++      V +AE
Sbjct: 282 EETALSARRNL--QGYEINGRQLRVDFAE 362


>TC10291 similar to UP|Q9ASP6 (Q9ASP6) AT4g00830/A_TM018A10_14, partial (7%)
          Length = 674

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +3

Query: 286 GTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAGFAQ 326
           G  ++QK  +LP YP  +GYG++G  YG +GAGYGA G AQ
Sbjct: 15  GVLHTQKQGLLPRYPPSVGYGLLGAPYGALGAGYGAPGLAQ 137


>TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial
           (30%)
          Length = 603

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 47/196 (23%), Positives = 82/196 (40%), Gaps = 12/196 (6%)
 Frame = +2

Query: 133 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNA 180
           + S  +++D+   G+++ F F+ + N   A  +   ++   F            K E   
Sbjct: 5   ITSAVVMRDVD--GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGKAKKKSEREL 178

Query: 181 PTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEK 240
                 E    E+    Q   +Y+KNL +N+  + L++LF   G IT   +     G  +
Sbjct: 179 ELKEQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSR 358

Query: 241 SRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYP 300
              GFV FS    A +AL       +DGK L  +LA+ + ++R+       +  +LP   
Sbjct: 359 GS-GFVAFSTPEEATRALGEMNGKMVDGKPLYVALAQKKEERRAKLQGGYFQQQLLPGM- 532

Query: 301 HRLGYGMVGGAYGGIG 316
            R G G +   Y  +G
Sbjct: 533 -RPGGGPLSNFYVPLG 577



 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 25/80 (31%), Positives = 43/80 (53%)
 Frame = +2

Query: 26  SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 85
           + +Y+  + +NV +E LR      G ++  +IM+    G  +G  FVAF T E A++A+ 
Sbjct: 236 ANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRALG 412

Query: 86  ELNNSEFKGKKIKCSSSQAK 105
           E+N     GK +  + +Q K
Sbjct: 413 EMNGKMVDGKPLYVALAQKK 472


>BI419822 
          Length = 380

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 41/77 (52%)
 Frame = +2

Query: 29  YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELN 88
           ++GG+A     E L       GE+ E +++  +E+G  +G+ FV F +++    AIE +N
Sbjct: 86  FVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQAMKDAIEAMN 265

Query: 89  NSEFKGKKIKCSSSQAK 105
                G+ I  + +Q++
Sbjct: 266 GQNLDGRNITVNEAQSR 316



 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
 Frame = +2

Query: 185 WAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKV-VLPPAKSGQEKSRF 243
           W    +S +SA  + +  +V  L      ++L+K F  +G+I +  V+   ++G+ +  F
Sbjct: 35  WFFSFSSMASAEIEFRC-FVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRG-F 208

Query: 244 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRL 303
           GFV F+   +   A++      +DG+N+  +    EA  R S                  
Sbjct: 209 GFVTFASEQAMKDAIEAMNGQNLDGRNITVN----EAQSRGSSGG--------------- 331

Query: 304 GYGMVGGAYGGIGAGYGAAG 323
                GG YGG G GYG  G
Sbjct: 332 -----GGRYGGGGGGYGGGG 376


>BP036697 
          Length = 578

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVL--PPAKSGQEKSRFGFVHFSDRSSAMKA 257
           + VYV NLP +I +  ++ LF  +G IT + L  PP   G     + FV F D   A  A
Sbjct: 96  RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 260

Query: 258 LKNTEKYEIDGKNLECSLA 276
           ++  + Y+ DG  L   LA
Sbjct: 261 IRGRDGYDFDGHRLRVELA 317


>TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
           partial (46%)
          Length = 1150

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 31/101 (30%), Positives = 51/101 (49%), Gaps = 4/101 (3%)
 Frame = +3

Query: 4   NHTNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQ----SVGEVSEVRIMK 59
           N ++D  +   + E     P  + VY+G + ++V++ +L   CQ      G + EVRI +
Sbjct: 285 NGSSDGGQDNNNEEAPENNPSYTTVYVGNLPHDVTQAELH--CQFHALGAGVIEEVRIQR 458

Query: 60  AKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCS 100
            K      G+ FV + T E A+ AI+  N    +GK +KCS
Sbjct: 459 DK------GFGFVRYNTHEEAALAIQVANGRIVRGKTMKCS 563



 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 42/149 (28%)
 Frame = +3

Query: 53  SEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKC---------SSSQ 103
           S+ R+M   ++G  KGY FV+F+  + A  +I ++       ++I+C         SSS+
Sbjct: 66  SDARVMWDHKTGRSKGYGFVSFRDHQDAQSSINDMTGKWLGNRQIRCNWATKGAGGSSSE 245

Query: 104 AKH---------------------------------RLFIGNIPKKWTVEDMKKVVADVG 130
            K+                                  +++GN+P   T  ++      +G
Sbjct: 246 EKNSDNQNAVVLTNGSSDGGQDNNNEEAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG 425

Query: 131 PGVISIELLKDLQSSGRNRGFAFIEYYNH 159
            GVI    ++      R++GF F+ Y  H
Sbjct: 426 AGVIEEVRIQ------RDKGFGFVRYNTH 494



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 45/197 (22%), Positives = 73/197 (36%), Gaps = 36/197 (18%)
 Frame = +3

Query: 145 SGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA---------EPRNSESSA 195
           +GR++G+ F+ + +H  A+ S   M+     L N     +WA         E +NS++  
Sbjct: 96  TGRSKGYGFVSFRDHQDAQSSINDMTGK--WLGNRQIRCNWATKGAGGSSSEEKNSDNQN 269

Query: 196 V-----------------------SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLP 232
                                        VYV NLP ++TQ  L   F   G     V+ 
Sbjct: 270 AVVLTNGSSDGGQDNNNEEAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGA---GVIE 440

Query: 233 PAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK----PEADQRSSGTS 288
             +  ++K  FGFV ++    A  A++      + GK ++CS       P          
Sbjct: 441 EVRIQRDKG-FGFVRYNTHEEAALAIQVANGRIVRGKTMKCSWGSRPTPPGTASNPLPPP 617

Query: 289 NSQKPVVLPTYPHRLGY 305
            +Q   +LPT     GY
Sbjct: 618 AAQPYQILPTAGMNQGY 668


>TC16457 similar to UP|Q41124 (Q41124) Chloroplast RNA binding protein
           precursor, partial (30%)
          Length = 655

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 23/84 (27%), Positives = 42/84 (49%)
 Frame = +2

Query: 22  PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
           P    ++++G ++  V+ E L       G V   R++   E+G  +GY FV +  +    
Sbjct: 2   PETEHKLFVGNLSWTVTSESLIQVFPEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 181

Query: 82  QAIEELNNSEFKGKKIKCSSSQAK 105
            A+  LNN E +G+ I+ S ++ K
Sbjct: 182 TALISLNNVELEGRAIRVSLAEGK 253



 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 29/89 (32%), Positives = 48/89 (53%)
 Frame = +2

Query: 103 QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACA 162
           + +H+LF+GN+    T E + +V  + G  V+   +L D   +GR+RG+ F+ Y     +
Sbjct: 5   ETEHKLFVGNLSWTVTSESLIQVFPEYGT-VVGARVLYD-GETGRSRGYGFVCYSKR--S 172

Query: 163 EYSRQKMSNSNFKLENNAPTVSWAEPRNS 191
           E     +S +N +LE  A  VS AE + S
Sbjct: 173 ELETALISLNNVELEGRAIRVSLAEGKRS 259



 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 24/77 (31%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
 Frame = +2

Query: 202 VYVKNLPENITQDSLKKLFEHHGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKN 260
           ++V NL   +T +SL ++F  +G +    VL   ++G+ +  +GFV +S RS    AL +
Sbjct: 20  LFVGNLSWTVTSESLIQVFPEYGTVVGARVLYDGETGRSRG-YGFVCYSKRSELETALIS 196

Query: 261 TEKYEIDGKNLECSLAK 277
               E++G+ +  SLA+
Sbjct: 197 LNNVELEGRAIRVSLAE 247


>AV411398 
          Length = 427

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 27/101 (26%), Positives = 50/101 (48%)
 Frame = +3

Query: 205 KNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKY 264
           +N+P   T + ++ LFE +G + +V L      + +    FV  S    A++AL   E Y
Sbjct: 93  QNVPWTSTPEDVRSLFERYGTVLEVELSMYNKTRSRG-LAFVEMSSPEEALEALNKLESY 269

Query: 265 EIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGY 305
           E +G+ L+ + A+P+  +++      +KPV    +   L Y
Sbjct: 270 EFEGRVLKLNYARPK-KKKAPPPVVQRKPVTFNLFVANLSY 389



 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
 Frame = +3

Query: 33  IANNV----SEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELN 88
           +A NV    + ED+R   +  G V EV +    ++  R G AFV   + E A +A+ +L 
Sbjct: 87  VAQNVPWTSTPEDVRSLFERYGTVLEVELSMYNKTRSR-GLAFVEMSSPEEALEALNKLE 263

Query: 89  NSEFKGKKIKCSSSQAKHR---------------LFIGNIPKKWTVEDMKK 124
           + EF+G+ +K + ++ K +               LF+ N+  + T +D+++
Sbjct: 264 SYEFEGRVLKLNYARPKKKKAPPPVVQRKPVTFNLFVANLSYEATSKDLRE 416


>TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor SF2-like
           protein, partial (46%)
          Length = 597

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 34/121 (28%), Positives = 49/121 (40%)
 Frame = +1

Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
           + +YV NLP +I +  ++ +F  +G+I  + L   K       + FV F +   A  A++
Sbjct: 256 RTIYVGNLPGDIRESEIEDIFYKYGRILDIEL---KVPPRPPCYCFVEFDNARDAEDAIR 426

Query: 260 NTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGY 319
             + Y  DG  L   LA                    PT   R GYG  GG  GG G   
Sbjct: 427 GRDGYNFDGCRLRVELAHGGRG---------------PTSSDRRGYGGGGGGGGGGGGRI 561

Query: 320 G 320
           G
Sbjct: 562 G 564


>TC19344 weakly similar to GB|AAA34838.1|172092|YSCPABPG
           polyadenylate-binding protein {Saccharomyces
           cerevisiae;} , partial (18%)
          Length = 518

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 37/59 (62%)
 Frame = +3

Query: 26  SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
           S +Y+  I +NVS+E+LR    + G ++  ++MK  E G  +G+ FV F T E A++A+
Sbjct: 153 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMK-DEKGISQGFGFVCFSTPEEANKAV 326



 Score = 35.4 bits (80), Expect = 0.015
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 202 VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
           +YVKN+ +N++ + L+  F   G IT   +   + G  +  FGFV FS    A KA+
Sbjct: 159 IYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISQG-FGFVCFSTPEEANKAV 326


>AV409413 
          Length = 422

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 45/85 (52%)
 Frame = +2

Query: 30  IGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNN 89
           +GGI  +VSE++L+ F    G+V E  I++   +   +G+ F+ F  +++    + + N 
Sbjct: 2   VGGIPTSVSEDELKGFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDTILTDGNM 181

Query: 90  SEFKGKKIKCSSSQAKHRLFIGNIP 114
            +  G +++   ++ K     G++P
Sbjct: 182 IDMAGTQVEIKKAEPKKSSNSGSLP 256



 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
 Frame = +2

Query: 204 VKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEK 263
           V  +P ++++D LK  F  +GK+ +  +    + +    FGF+ F +       L +   
Sbjct: 2   VGGIPTSVSEDELKGFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDTILTDGNM 181

Query: 264 YEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGA--YGGIGA-GYG 320
            ++ G  +E   A+P    + S  S S  P    + P     G  G A  YG  G+ GYG
Sbjct: 182 IDMAGTQVEIKKAEP----KKSSNSGSLPPFASDSRPRSYNDGFSGFADSYGSFGSGGYG 349

Query: 321 AAGF 324
              +
Sbjct: 350 PGSY 361


>TC16529 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (22%)
          Length = 761

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 65/147 (43%), Gaps = 8/147 (5%)
 Frame = +1

Query: 25  SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
           ++ +Y+G +  NV++  L      VG+V  VR+ +   +    GY +V F     A++A+
Sbjct: 328 TTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPPDAARAL 507

Query: 85  EELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 136
           + LN +    + I+   S             +FI N+ K    + +    +  G  ++S 
Sbjct: 508 DVLNFTPLNNRPIRVMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFG-SILSC 684

Query: 137 ELLKDLQSSGRNRGFAFIEYYNHACAE 163
           ++  D  +SG+++  A        CAE
Sbjct: 685 KIATD--ASGQSKAMALFSLTLSICAE 759



 Score = 37.0 bits (84), Expect = 0.005
 Identities = 32/134 (23%), Positives = 60/134 (43%)
 Frame = +1

Query: 108 LFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQ 167
           L++G++ +      +  +   VG  V+S+ + +DL ++ R+ G+ ++ + N   A  +  
Sbjct: 337 LYVGDLDQNVNDSQLYDLFNQVGQ-VVSVRVCRDL-TTRRSLGYGYVNFSNPPDAARALD 510

Query: 168 KMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT 227
            +   NF   NN P       R+  S   S    +++KNL + I   +L   F   G I 
Sbjct: 511 VL---NFTPLNNRPIRVMYSHRDP-SIRKSGTANIFIKNLDKAIDHKALHDTFSSFGSIL 678

Query: 228 KVVLPPAKSGQEKS 241
              +    SGQ K+
Sbjct: 679 SCKIATDASGQSKA 720


>TC12531 similar to UP|Q9ASQ8 (Q9ASQ8) At1g22910/F19G10_13, partial (39%)
          Length = 688

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 18/58 (31%), Positives = 35/58 (60%)
 Frame = -1

Query: 26  SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQA 83
           ++V++GG+A    +E ++ + +  G++ E  ++  K +G  KGY FV F+  E A +A
Sbjct: 361 TKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRA 188


>TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotein,
           chloroplast precursor, partial (28%)
          Length = 717

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = +3

Query: 201 AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKN 260
           +VYV NLP ++    L+++F  HG +    +   +       FGFV  S  +    A+  
Sbjct: 81  SVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAA 260

Query: 261 TEKYEIDGKNLECSLAKPEADQRSS 285
            +   +DG+ +  S+A+  +  RSS
Sbjct: 261 LDGQSLDGRTIRVSVAEGRSGGRSS 335


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,450,665
Number of Sequences: 28460
Number of extensions: 87213
Number of successful extensions: 849
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of query: 370
length of database: 4,897,600
effective HSP length: 92
effective length of query: 278
effective length of database: 2,279,280
effective search space: 633639840
effective search space used: 633639840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)