TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0010.19
         (295 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14894 weakly similar to UP|Q9LD82 (Q9LD82) ESTs AU029648, part...    49  1e-06
CB827498                                                               28  1.4
TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization s...    28  1.8
TC19948 weakly similar to UP|Q8DLX6 (Q8DLX6) Tlr0350 protein, pa...    27  3.1
TC18117 weakly similar to UP|Q9AYM8 (Q9AYM8) CPRD2 protein, part...    27  5.4
BP041908                                                               26  7.0
TC18271 similar to UP|O23442 (O23442) Dynein light chain like pr...    26  9.1
TC12622 weakly similar to UP|AAQ62408 (AAQ62408) At3g43740, part...    26  9.1

>TC14894 weakly similar to UP|Q9LD82 (Q9LD82) ESTs AU029648, partial (84%)
          Length = 982

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 58/224 (25%), Positives = 87/224 (37%), Gaps = 21/224 (9%)
 Frame = +3

Query: 84  RLESRTLEEALMAVPD---LETVKFKVLSRRDNYEIRE-----------VEPYFVAEATM 129
           R  S TL+ A    P    +E   + V+   + YEIR            ++   + EAT 
Sbjct: 90  RSGSLTLKNAGSIPPTCKRIECPSYDVIQVGNGYEIRRYNSTVWISNSPIQDISLVEATR 269

Query: 130 PGKSGFDFSGASQSFNVLAEYLFGKNTLKEKMEMTTPVYTSKNQSDGVKMDMTTPVYTAK 189
            G            F  L  Y+ GKN   +K+EMT PV +  + SDG             
Sbjct: 270 TG------------FLRLFNYIQGKNDYSQKIEMTAPVLSEVSPSDGPFC---------- 383

Query: 190 MEDQDKWTMSFILPSKYGANLPLPKDSSVRIKEIPRKIVAVVSFSGFVNDEEVKQRELKL 249
              +  + +SF +P    AN P  K   + ++      VAV  F GFV+D  V +    L
Sbjct: 384 ---ESSFVVSFFVPKVNQANPPPAK--GLHVQRWKPVNVAVRQFGGFVSDASVGEEAAAL 548

Query: 250 REALKS-------DGQFKIKKGTSVEVAQYNPPFTLPFQRRNEI 286
           + ++         +   +    +   VAQY+ PF     R NEI
Sbjct: 549 KASIAGTKWAAAIEKSHRAGHASVYSVAQYHAPFEYD-NRVNEI 677


>CB827498 
          Length = 558

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +2

Query: 100 LETVKFKVLSRRDNYEIREVEPYFVA-------EATMPGKSGFDFSGASQSFNVLAEYLF 152
           L+ + F +L  R  + I E    F         E +  GK  F  +    +FN LA  LF
Sbjct: 143 LKRLMFFLLKSRREHVIPEFHIAFTELFESLEKELSKNGKVSFGEANDQAAFNFLARSLF 322

Query: 153 GKNTLKEKMEMTTPVYTSK 171
           G N  + ++++  P    K
Sbjct: 323 GANPAETELDLDGPKLIQK 379


>TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization sequence
           binding protein (P67), partial (6%)
          Length = 590

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 3   PLCNASLSSQSSIRTSIPGRPNIAITNSASSSERISNRRRTMSAVEARSSLILALASQAN 62
           P C++S SS SS            I+++ SSS  ++ R    S+  + SSLI ++   ++
Sbjct: 293 PPCSSSSSSASSAAAGSSSESG-GISSATSSSPELAGRATASSSSSSSSSLICSICCSSS 117

Query: 63  SLTQRLVVD 71
              + L  D
Sbjct: 116 EELELLESD 90


>TC19948 weakly similar to UP|Q8DLX6 (Q8DLX6) Tlr0350 protein, partial (6%)
          Length = 612

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 14/51 (27%), Positives = 24/51 (46%)
 Frame = -1

Query: 32  SSSERISNRRRTMSAVEARSSLILALASQANSLTQRLVVDVATETARYLFP 82
           ++  R+  RRR  S      S+I++L     S       ++  +TARY +P
Sbjct: 387 ANRSRVRRRRRARSPSSMAQSIIISLQC*PRSPCLNHTTELGIQTARYSYP 235


>TC18117 weakly similar to UP|Q9AYM8 (Q9AYM8) CPRD2 protein, partial (7%)
          Length = 445

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 130 PGKSGFDFSGASQSFNVLAEYLFGKNTLKEK 160
           PGKS F  SG+SQ  N+   +    +TLK+K
Sbjct: 109 PGKS*FHASGSSQYPNLYNSHKLPLDTLKDK 17


>BP041908 
          Length = 487

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 10  SSQSSIRTSIPGRPNIAITNSASSSERISN 39
           S+ ++  TS PG P  A TNSA+S +  S+
Sbjct: 240 STPTTTSTSPPGEPPPASTNSATSKKETSS 329


>TC18271 similar to UP|O23442 (O23442) Dynein light chain like protein,
           partial (80%)
          Length = 764

 Score = 25.8 bits (55), Expect = 9.1
 Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
 Frame = +2

Query: 8   SLSSQSSI--RTSIP-GRPNIAITNSASSSERISNRRRTMSAVEARSSLILALASQANS 63
           S SS SS+  ++SIP   PN  IT    + + +  RRRT S +  R      + S  +S
Sbjct: 110 SSSSSSSVIFQSSIPFTNPNAIITLLEDTEK*VKTRRRTFSELLHRRGTTTPMTSNPHS 286


>TC12622 weakly similar to UP|AAQ62408 (AAQ62408) At3g43740, partial (25%)
          Length = 668

 Score = 25.8 bits (55), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 144 FNVLAEYLFGKNTLKEKMEMTTPVY 168
           F+ ++ Y F   T K K+E T P++
Sbjct: 421 FSPISHYFFYNKTSKHKLEFTLPIF 347


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,022
Number of Sequences: 28460
Number of extensions: 36546
Number of successful extensions: 182
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of query: 295
length of database: 4,897,600
effective HSP length: 90
effective length of query: 205
effective length of database: 2,336,200
effective search space: 478921000
effective search space used: 478921000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)