BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.17
(237 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14792 similar to UP|O73620 (O73620) Nuclear protein SDK2, part... 40 4e-04
AW720134 35 0.009
TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-... 35 0.011
TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protei... 34 0.020
BP085971 34 0.020
CB826876 34 0.025
TC11833 34 0.025
BP060704 33 0.033
AW719831 33 0.033
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 33 0.033
TC14593 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (31%) 33 0.033
BP055866 26 0.051
TC8030 33 0.057
AV412074 32 0.074
TC12614 32 0.074
AV766680 32 0.097
TC12686 similar to UP|Q9FS24 (Q9FS24) Neoxanthin cleavage enzyme... 32 0.097
TC14229 similar to UP|P93166 (P93166) SCOF-1, partial (38%) 32 0.13
TC10927 32 0.13
TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, par... 32 0.13
>TC14792 similar to UP|O73620 (O73620) Nuclear protein SDK2, partial (5%)
Length = 492
Score = 40.0 bits (92), Expect = 4e-04
Identities = 41/139 (29%), Positives = 57/139 (40%), Gaps = 12/139 (8%)
Frame = +2
Query: 86 EKQKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPT--------TF 137
+K+KQ ++ V+P A P+ + P Q L QQPP P+PT T
Sbjct: 74 KKRKQPQRSPAVEP---AAKPV-DVEPQDQDSVEL----DHQQPPNPEPTTDLDQSNNTM 229
Query: 138 TLSTEPRKTDKRRRRR---DPGKEIERDREPPIET-SHPNLHRDRDGGGMERRGARSRET 193
+ EP + D+ + D E E+D E P T S P R GG RG+R
Sbjct: 230 AVDEEPEEQDQETEDQPQIDDAVEEEQDPEAPATTESEPQQQR----GGRRGRGSRIGGG 397
Query: 194 AKRDRETMDHHHALHLPPQ 212
+R+ H A L Q
Sbjct: 398 TRREASGAIHEGAAALSGQ 454
>AW720134
Length = 515
Score = 35.4 bits (80), Expect = 0.009
Identities = 30/97 (30%), Positives = 39/97 (39%)
Frame = +2
Query: 115 QQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNL 174
Q+ N H H QQ+ PPPPQ P + +R R P ++ R R P+ L
Sbjct: 50 QKLLNQHHHHQQRLPPPPQ--------NPPQLPLLQRHRIP--QLHRCRNLPLRHRLRTL 199
Query: 175 HRDRDGGGMERRGARSRETAKRDRETMDHHHALHLPP 211
H R RR R +R R T + L L P
Sbjct: 200 HVPR------RRRPRHLPPVRRQRHTPPAN*VLPLQP 292
>TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-like
protein, partial (83%)
Length = 1784
Score = 35.0 bits (79), Expect = 0.011
Identities = 30/109 (27%), Positives = 44/109 (39%), Gaps = 10/109 (9%)
Frame = +3
Query: 123 HRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLH--RDRDG 180
HR+Q +P QP+T + +P R+ P + RD + P + + N H R R
Sbjct: 144 HRRQLRPSRRQPSTAKVHRQPPPI-HLHRKNPPLRRRSRDHQGPRQFRNRNHHRRRQRRH 320
Query: 181 GGMERRGARSRETAKRDRETM---DHHHALHLPP-----QIPEPTFALG 221
RR R K R T+ HH+ H + P+P A G
Sbjct: 321 SKSRRRSQRRSSVGKLQRLTLLPRQQHHSHHRRQRGTHLRRPQPRLAAG 467
>TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protein) (IK
factor) (Cytokine IK), partial (6%)
Length = 492
Score = 34.3 bits (77), Expect = 0.020
Identities = 30/109 (27%), Positives = 43/109 (38%), Gaps = 6/109 (5%)
Frame = +1
Query: 96 LVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQ------PPPPQPTTFTLSTEPRKTDKR 149
L PKF + L +Q + R+ QQ PP P + + R
Sbjct: 184 LPKPKFLTKAEREELALKRRQDQIADQRRRHQQILSDSNPPSADPNRRDRDRDRDRDRDR 363
Query: 150 RRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERRGARSRETAKRDR 198
R RD ++ +RDRE N R+RD R AR + A+R+R
Sbjct: 364 DRERDRERDRDRDRE------RRNRERERDEENKARERARLEKLAERER 492
>BP085971
Length = 500
Score = 34.3 bits (77), Expect = 0.020
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = -2
Query: 120 LHEHRQQQQPPPPQPTTFTLSTEPRKTDKRR 150
L HRQ Q PPPP P T +S + +K + R
Sbjct: 265 LFRHRQPQPPPPPTPVTNNISDQQKKRSQSR 173
>CB826876
Length = 646
Score = 33.9 bits (76), Expect = 0.025
Identities = 26/82 (31%), Positives = 37/82 (44%), Gaps = 4/82 (4%)
Frame = -3
Query: 120 LHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPN----LH 175
LH H+ Q P P PT E + R+RRR G EI +D P ++H + LH
Sbjct: 554 LHPHKSQLFPKPNFPTKI*RLPEHYQDINRKRRRSSGVEINQD--PIFPSTHKDPLSFLH 381
Query: 176 RDRDGGGMERRGARSRETAKRD 197
+ +E A S+ + RD
Sbjct: 380 KGPTFPWLEASMAVSKHRSVRD 315
>TC11833
Length = 562
Score = 33.9 bits (76), Expect = 0.025
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 128 QPPPPQPTTFTLSTEP 143
QPPPP TTFTLSTEP
Sbjct: 138 QPPPPPHTTFTLSTEP 185
>BP060704
Length = 340
Score = 33.5 bits (75), Expect = 0.033
Identities = 25/68 (36%), Positives = 33/68 (47%)
Frame = +2
Query: 88 QKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTD 147
QKQQ+Q L++ +T TL+ P L PPPP P + TLST P +
Sbjct: 71 QKQQQQQQLLNQPWT------TLHATV*PPSRLTCF-----PPPPPPRSSTLSTSPLGSR 217
Query: 148 KRRRRRDP 155
+RR R P
Sbjct: 218 RRRTSRVP 241
>AW719831
Length = 436
Score = 33.5 bits (75), Expect = 0.033
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Frame = +2
Query: 90 QQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKR 149
+Q+Q L P+F+ L + H H+Q Q PPP L P + R
Sbjct: 92 EQQQQLLFPPQFSRFLSSLPLR------CDRHHHQQ*HQQPPP----LLLRRTPTSSSLR 241
Query: 150 RRRRDPGK-EIERDR--EPPIETSHPNLHRDRDGGGMERRGARSRETAKRDRETMDHHHA 206
RR + ++ R PP + H L R +D R + + R+ H
Sbjct: 242 RRMQGQAHVQLRRQNPAPPPRQQPHLRLRRHQD-----PRRRPLHQAPRLHRQAHFPHQF 406
Query: 207 LHLPPQIPEP 216
L PQ+P P
Sbjct: 407 LRFLPQVPTP 436
Score = 25.8 bits (55), Expect = 6.9
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 169 TSHPNLHRDRDGGGMERRGARSRETAKRDRETMDHHHALHLPPQIPEPTFALGFLRLVVV 228
+SHPN RD R T + +T +HHH+ P P P+ A ++L+
Sbjct: 111 SSHPN---SRDSSPRSRSDVIDTTT---NNDTNNHHHSSFDEPPPPPPSAAACKVKLMCS 272
Query: 229 LG 230
G
Sbjct: 273 YG 278
>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
Length = 682
Score = 33.5 bits (75), Expect = 0.033
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Frame = +2
Query: 111 NPATQQPYNLHEHRQQQQPPPPQ----PTTFTLSTEPRKTDKRRRRRDPGKEIERDREPP 166
NP Q N H +QQQ P+ P PR+ +RRR PG+ +R + P
Sbjct: 26 NPKFLQFPNSRWHPRQQQRRSPRQRRSPLRRRSRRRPRRLHRRRRSPRPGRSFQRRAQAP 205
Query: 167 IETSHPNLHRDRDGGGMERRGARSRETAKR 196
ET R G R +R T+ R
Sbjct: 206 PET--------RRRRGARRTWRHTRSTSSR 271
>TC14593 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (31%)
Length = 1112
Score = 33.5 bits (75), Expect = 0.033
Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 12/130 (9%)
Frame = -1
Query: 82 THGREKQKQQRQGFLVDPKFTVASPIFTLNPATQQPYN--LHEHRQQQQPPPPQPTTFTL 139
+H + + Q Q + P T I T + ++ P N H H Q Q PP P P + T
Sbjct: 737 SHTQSHTRFQNQTWF-HPLPTSNPSIHTHSSRSENPPNPRTHFHPQPQTPPSPSPKS*TP 561
Query: 140 STEPRKTDKRRRRRDPGKE--------IERDREP--PIETSHPNLHRDRDGGGMERRGAR 189
T R R G + R EP P H R R G G R R
Sbjct: 560 PTPTSPAPPHNRGRPSGPDPPHPPPRGSRRRPEPP*P*AKRHSASRRCRIGAGERRALRR 381
Query: 190 SRETAKRDRE 199
+R +R R+
Sbjct: 380 ARRRRRRRRD 351
>BP055866
Length = 541
Score = 26.2 bits (56), Expect(2) = 0.051
Identities = 14/30 (46%), Positives = 18/30 (59%), Gaps = 5/30 (16%)
Frame = +1
Query: 111 NPATQQPYNLHEHRQQ-----QQPPPPQPT 135
NPAT++ EHR+Q +PPPP PT
Sbjct: 16 NPATKRKST--EHRRQTTASPTEPPPPTPT 99
Score = 25.4 bits (54), Expect(2) = 0.051
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 175 HRDRDGGGMERRGARSRETAKRDRETMDHHHALHLPPQIPEPTFALGFLR 224
HR+ RR +E R R H PPQ+P+PT + LR
Sbjct: 125 HREIPAHHRSRRPPNPKEARPRLRAPPQGQH--RSPPQVPQPTRPVRRLR 268
>TC8030
Length = 991
Score = 32.7 bits (73), Expect = 0.057
Identities = 15/35 (42%), Positives = 18/35 (50%)
Frame = +2
Query: 102 TVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTT 136
TVASP F L+ + P LH H+ PP P T
Sbjct: 218 TVASPPFVLSGQPRAPPRLHHHQTTMNAPPQPPQT 322
>AV412074
Length = 216
Score = 32.3 bits (72), Expect = 0.074
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 110 LNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEI 159
L+P +P H HR+ Q PP P F L +RR RR P + I
Sbjct: 55 LSPPPHRPDMFHRHRRNQLPPQPH---FLLHRPQNAPPRRRFRRPPPRFI 195
>TC12614
Length = 577
Score = 32.3 bits (72), Expect = 0.074
Identities = 23/83 (27%), Positives = 35/83 (41%), Gaps = 1/83 (1%)
Frame = +3
Query: 85 REKQKQQRQGFLVDPKFTVAS-PIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP 143
R +++ Q + P T S P N +P + Q +QPPPP T +
Sbjct: 75 RRRRRHQTFNHRIRPFQTPTSFPTQNPNSPNPKPMASPQETQDEQPPPPPHRTPAPTLPR 254
Query: 144 RKTDKRRRRRDPGKEIERDREPP 166
+T RRRR + + R + PP
Sbjct: 255 LRT*HRRRRGTRFRHLLRPQPPP 323
>AV766680
Length = 462
Score = 32.0 bits (71), Expect = 0.097
Identities = 20/60 (33%), Positives = 27/60 (44%), Gaps = 5/60 (8%)
Frame = -1
Query: 104 ASPIFTLNPATQQPYNLHEHRQQQQPPPPQ---PTTFTLSTE--PRKTDKRRRRRDPGKE 158
A +F NP + L +H QP P + PT F E P K +R+R D GK+
Sbjct: 387 ALDLFLSNPLSNNCLELDDHTWGGQP*PAK*SPPTAFNFDRERLPMKLKNKRKRTDTGKQ 208
>TC12686 similar to UP|Q9FS24 (Q9FS24) Neoxanthin cleavage enzyme, partial
(18%)
Length = 632
Score = 32.0 bits (71), Expect = 0.097
Identities = 28/94 (29%), Positives = 38/94 (39%), Gaps = 8/94 (8%)
Frame = +1
Query: 70 LLEPFRIWVVTATHGREKQKQQR----QGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQ 125
L+ P RIW +H R + +R Q + P F FT +P + P Q
Sbjct: 184 LIPPSRIWAPQVSHQRSQSPSRRGPPPQSAAIKP-FHARFKHFT-SPKSTNP-------Q 336
Query: 126 QQQPPPPQPTTFTLSTEPRKTDK----RRRRRDP 155
+ PPPP+P T P K R+RR P
Sbjct: 337 KPPPPPPKPPLPQRKTPPNHCPKIGTFYRKRRPP 438
>TC14229 similar to UP|P93166 (P93166) SCOF-1, partial (38%)
Length = 1175
Score = 31.6 bits (70), Expect = 0.13
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = +2
Query: 82 THGREKQKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLST 141
+H R + +R L + T + A + + HR+ + PPPP TT
Sbjct: 332 SHNRRRNNNRR*NLLTSAACVTRRSLLTKHSAATKQATANPHRKIKLPPPPPSTTTLPCR 511
Query: 142 EPRKTDKR 149
P T +R
Sbjct: 512 HPPVTAER 535
>TC10927
Length = 575
Score = 31.6 bits (70), Expect = 0.13
Identities = 13/47 (27%), Positives = 26/47 (54%)
Frame = +1
Query: 125 QQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSH 171
++ QPPPP ++ T++T P + + +R+ PP+++SH
Sbjct: 58 ERMQPPPPPYSSLTITTSPLRNHQHKRK----------CHPPLQSSH 168
>TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, partial (40%)
Length = 784
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +2
Query: 127 QQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR 186
+Q PPP P T + R+ RR R+ RD PP E H R +E+
Sbjct: 242 RQRPPPHPQTRRANPRHRRPRPRRHRQRQDALEPRDSHPPEEAPHQEGQASR--LRIEKS 415
Query: 187 GARSRE 192
G R E
Sbjct: 416 GDREEE 433
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,034,111
Number of Sequences: 28460
Number of extensions: 90432
Number of successful extensions: 1713
Number of sequences better than 10.0: 199
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of query: 237
length of database: 4,897,600
effective HSP length: 87
effective length of query: 150
effective length of database: 2,421,580
effective search space: 363237000
effective search space used: 363237000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0010.17