Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0010.15
         (268 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8576 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein (At2g3622...   302  3e-83
TC8421 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein (At2g3622...   235  7e-63
TC9186 homologue to UP|Q9BIW6 (Q9BIW6) Brahma-associated protein...   185  6e-48
TC10263                                                                67  3e-12
TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein...    37  0.003
TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)          33  0.066
TC15694 weakly similar to UP|Q8W042 (Q8W042) Prenylated Rab rece...    32  0.11
TC7910 homologue to UP|P93166 (P93166) SCOF-1, partial (52%)           31  0.25
AV425445                                                               30  0.33
AV408367                                                               30  0.33
AV419050                                                               30  0.43
TC10006 similar to UP|P93396 (P93396) Transformer-SR ribonucleop...    30  0.56
TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-r...    29  0.73
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par...    29  0.73
TC12048 weakly similar to UP|Q9LGA3 (Q9LGA3) ESTs D22655(C0749),...    29  0.95
TC16512 similar to UP|Q9FXL4 (Q9FXL4) Elicitor inducible chitina...    29  0.95
TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1...    28  1.2
BI418305                                                               28  2.1
BP037373                                                               27  4.7
TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%)    27  4.7

>TC8576 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein
           (At2g36220/F2H17.17), partial (17%)
          Length = 604

 Score =  302 bits (774), Expect = 3e-83
 Identities = 146/146 (100%), Positives = 146/146 (100%)
 Frame = +1

Query: 1   MQQAETLVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALY 60
           MQQAETLVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALY
Sbjct: 166 MQQAETLVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALY 345

Query: 61  ERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKR 120
           ERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKR
Sbjct: 346 ERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKR 525

Query: 121 SVSVTKSVTSHAEPSSPKVSCMGRVR 146
           SVSVTKSVTSHAEPSSPKVSCMGRVR
Sbjct: 526 SVSVTKSVTSHAEPSSPKVSCMGRVR 603


>TC8421 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein
           (At2g36220/F2H17.17), partial (10%)
          Length = 749

 Score =  235 bits (599), Expect = 7e-63
 Identities = 120/121 (99%), Positives = 120/121 (99%)
 Frame = +1

Query: 148 KRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAA 207
           KRDRSRSRSLRLRNSR SSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAA
Sbjct: 1   KRDRSRSRSLRLRNSR*SSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAA 180

Query: 208 EDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSESWGVGESEIHVS 267
           EDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSESWGVGESEIHVS
Sbjct: 181 EDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSESWGVGESEIHVS 360

Query: 268 R 268
           R
Sbjct: 361 R 363


>TC9186 homologue to UP|Q9BIW6 (Q9BIW6) Brahma-associated protein 111kD,
           partial (3%)
          Length = 618

 Score =  185 bits (470), Expect = 6e-48
 Identities = 107/178 (60%), Positives = 126/178 (70%), Gaps = 13/178 (7%)
 Frame = +1

Query: 5   ETLVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNA-LYERK 63
           ETLVSACAGGS DRKI CE L ++ +PP  H DSPP SFWLS D E+DW+DRNA +YER 
Sbjct: 43  ETLVSACAGGSTDRKIACEPLTDEPEPP-HHIDSPPASFWLSGDAEYDWWDRNAVVYERN 219

Query: 64  ESTKGSTS------SSTTNSQRFSLNL----KSRIIGLPKPQKPSFTDAKNRRNHKPCNN 113
           EST+G++S       S +NSQRFS NL    K+ IIGLPK QK SF D +NRRNH    N
Sbjct: 220 ESTRGNSSITSTNPGSNSNSQRFSKNLKHHPKAAIIGLPKSQKASFNDVRNRRNHHHPCN 399

Query: 114 IKLFPKRSVSV-TKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRN-SRKSSIDA 169
            +LFPKRS SV +KS T   EP SPKVSC+GRVRSKRDR+R    R R+ S  +S+ A
Sbjct: 400 ARLFPKRSASVRSKSDTVVIEPLSPKVSCIGRVRSKRDRNRRLRTRQRSISSTTSVSA 573


>TC10263 
          Length = 559

 Score = 67.0 bits (162), Expect = 3e-12
 Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +2

Query: 213 TNSVVKARD-STASVNDASFAESISSEPPGLGGMMRFASGRRSESWGVGESEIHVS 267
           T +  KAR  ST S  D SF ES+ +EP GLG M RFASGRRSESWGVGE EI +S
Sbjct: 23  TRNSRKARGGSTVSRTDTSFEESVRTEPAGLGSMNRFASGRRSESWGVGECEIQLS 190


>TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1,
           partial (46%)
          Length = 1358

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 38/148 (25%), Positives = 58/148 (38%), Gaps = 14/148 (9%)
 Frame = +2

Query: 133 EPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFR 192
           EP+SPK+SCMG+++ K+++ +      ++  K S+    E      RK          F 
Sbjct: 401 EPTSPKISCMGQIKHKKNQIK------KSKSKKSVSLQNET-----RK----------FA 517

Query: 193 SGRRKKAHRETDSAAE---------DSTVTNSVVKARDSTASVNDASFAESISSEPPGLG 243
           S   K     T ++ +          S     +  A     S    S A S   E P + 
Sbjct: 518 STTNKTTTTSTSNSTDVIEVKKKNVASKFQRMLFHAAKQPKSAGRKSDASSAEREAPHMS 697

Query: 244 GMMRFASGR---RSESW--GVGESEIHV 266
            M RF+SGR    S  W   +   EIH+
Sbjct: 698 QMKRFSSGRDAFSSFDWKAEMAAEEIHI 781


>TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)
          Length = 1073

 Score = 32.7 bits (73), Expect = 0.066
 Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 106 RNHKPCNNIKLFPKRSVSVTKSVTSH-AEPSSPK--VSCMGRVRSKRDRSRSRSLRLRNS 162
           R HKPC++  L   RS S+T+S T H   PSSP     C  RV ++       SL  RN 
Sbjct: 11  RAHKPCSSF*LAATRS-SLTESPTHHNG*PSSPPHLTPCFRRVTTRSTSLGETSLAYRNL 187

Query: 163 R 163
           R
Sbjct: 188 R 190


>TC15694 weakly similar to UP|Q8W042 (Q8W042) Prenylated Rab receptor 2,
           partial (46%)
          Length = 458

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 26/85 (30%), Positives = 37/85 (42%), Gaps = 4/85 (4%)
 Frame = +3

Query: 86  SRIIGLPKPQKPSFTDAKNRRN--HKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMG 143
           S +   P   K S T A+ R +    PC+ +   PKR++   +   +    +SP      
Sbjct: 198 SSLASPPPSAKASPTAARGRSSLTAPPCHGLTPSPKRTLGSARISHTSVSTTSPSSPSRS 377

Query: 144 RVRSKRDRSR--SRSLRLRNSRKSS 166
           R RS R RSR  S S   R  R S+
Sbjct: 378 RCRSLRIRSRCLSSSASSRRGRSST 452


>TC7910 homologue to UP|P93166 (P93166) SCOF-1, partial (52%)
          Length = 1035

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 24/67 (35%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
 Frame = +2

Query: 110 PCNNIKLFPKRSVSVTKSVT--SHAEPSSPKVSCMGRV-RSKRDRSRSRSLRLRNSRKSS 166
           P    +L  +R+V   K+    SH +PS P+    GRV RS    +RSR  R RN++  S
Sbjct: 149 PGTEPQLHGRRTVGEEKAFQAFSHGQPSQPRFLHGGRVSRSLPHHARSRQHR-RNTQAHS 325

Query: 167 IDAGEEN 173
           + +G  N
Sbjct: 326 VSSGTGN 346


>AV425445 
          Length = 344

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 70  TSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKP 110
           T + + NS  +SLNLK     +P P K       NR+NHKP
Sbjct: 124 TQN*SHNSSLYSLNLKK----IPFPWKTPSKHTLNRKNHKP 14


>AV408367 
          Length = 431

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 17/59 (28%), Positives = 32/59 (53%)
 Frame = +3

Query: 108 HKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSS 166
           H PC + KL PK++VS    ++S +   SP+   +  ++   DR++S    L+ S  ++
Sbjct: 162 HAPCGHDKLDPKQTVSKMAKLSSASPVKSPQ--SLPAMKPNLDRNKSSKPLLKGSSNAT 332


>AV419050 
          Length = 409

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 33/124 (26%), Positives = 48/124 (38%)
 Frame = +1

Query: 144 RVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRET 203
           R RSKR RSRSRS+    SR +   +  E   R         R        + +K HR  
Sbjct: 91  RTRSKRSRSRSRSIDHGRSRHARSRSPSERSHR--------RRHHRTPSPDQPRKRHRR- 243

Query: 204 DSAAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSESWGVGESE 263
           DS  +D   T  VV           + F +          G+++    +  E+ G GE E
Sbjct: 244 DSVEDDHKDTKKVV-----------SDFVD----------GIVKEQQQKHKENGGGGEGE 360

Query: 264 IHVS 267
           + V+
Sbjct: 361 VEVN 372


>TC10006 similar to UP|P93396 (P93396) Transformer-SR ribonucleoprotein
           (Fragment), partial (30%)
          Length = 453

 Score = 29.6 bits (65), Expect = 0.56
 Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 10/87 (11%)
 Frame = +3

Query: 94  PQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMG---------- 143
           P   S +D+  RRN +  +     P R+ S ++S +   +  SP+               
Sbjct: 78  PDSTSMSDSPVRRNSRSPS-----PWRAQSRSRSRSPRPKSRSPRPKSRSPRAKSRSPRP 242

Query: 144 RVRSKRDRSRSRSLRLRNSRKSSIDAG 170
           R RS R RSRSRSL  +  R  S   G
Sbjct: 243 RSRSPRPRSRSRSLEKQRPRSRSRSRG 323


>TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol
           4-reductase-like (Cinnamoyl-CoA reductase-like protein),
           partial (21%)
          Length = 479

 Score = 29.3 bits (64), Expect = 0.73
 Identities = 44/172 (25%), Positives = 64/172 (36%), Gaps = 10/172 (5%)
 Frame = -3

Query: 27  NKTDPPERHPDSP----PESFWLSKDEEHDWFDRNALYERKESTKGSTSSSTTNSQRFSL 82
           +++ PP+ HP SP    P S                    + ST G+TS+ST  +   S 
Sbjct: 474 DESPPPQHHPASP*TPTPPS------------------PPRSSTPGTTSASTRRTPHPST 349

Query: 83  NLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRS---VSVTKSVTSHAEPSSPKV 139
               R    P     S    K+RR     +  + +  R      V ++ +   E    + 
Sbjct: 348 TTHQR--PFPPASWDSGPMPKSRR*APRASRRRAWQLRGR*VFPVQRAGSGPCEDLPGRR 175

Query: 140 SCMGRVRSKRDRS---RSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFR 188
           +C GR R +R  S   R R  R R  R+     G   PG  GR  G + R R
Sbjct: 174 ACRGRPRGRRRSSCGWRGRRRRSRGCRRGRW*CGNGLPG--GR*RGGWGRRR 25


>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
          Length = 502

 Score = 29.3 bits (64), Expect = 0.73
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 146 RSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGR 179
           R +  RSRSRS R R  R+  ++ GE    R+ R
Sbjct: 257 RRRGSRSRSRSTRRRRGRRVGLEVGERERERLRR 156


>TC12048 weakly similar to UP|Q9LGA3 (Q9LGA3) ESTs D22655(C0749), partial
           (20%)
          Length = 697

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 32/138 (23%), Positives = 54/138 (38%), Gaps = 16/138 (11%)
 Frame = -3

Query: 22  CETLANKTDPPERHP--DSPPESFWLSKDEEHDWFDRNA-------------LYERKEST 66
           CE  A++   P+  P   SP E+  LS+ ++H   +                +Y+R+ S 
Sbjct: 665 CEKEAHQQS*PQETP*TTSPMETQKLSQQKKHVQNNPQTASSEYPADSRTKPIYQREMSP 486

Query: 67  KGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTK 126
                SST    +      +       P  PS +     R+H P ++  L P  S+   +
Sbjct: 485 DQKHQSSTPPPPQSP*ASSASSPSPSSPPPPSRSQPHPHRHHNPHHHTHLEPAASI*QNR 306

Query: 127 -SVTSHAEPSSPKVSCMG 143
             +  H  PS+P+  C G
Sbjct: 305 HQIQQHRPPSAPQ-QCAG 255


>TC16512 similar to UP|Q9FXL4 (Q9FXL4) Elicitor inducible chitinase
           Nt-SubE76, partial (48%)
          Length = 857

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 33/140 (23%), Positives = 58/140 (40%), Gaps = 5/140 (3%)
 Frame = +3

Query: 65  STKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAK-NRRNHKPC--NNIKLFPKRS 121
           STK  +++++T + RF   L+S +   P P  P  +D         PC  +++KL P   
Sbjct: 45  STKLLSNTTSTMTSRFPPPLRSPLSETPTPPHPGRSDPNWYSPFSSPCSSSSVKLGPISW 224

Query: 122 VSVTKSVTSHAEPSSPKVSCM--GRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGR 179
            + T S  +   P S   + +  GR+R  + R         ++RKS+  +    P     
Sbjct: 225 *TSTPSSRTSPTPMSSLSTTLFSGRIRVLQIRVTGCGTSTSSTRKSTPSSPRSPP*NSTT 404

Query: 180 KHGFFERFRAIFRSGRRKKA 199
              +F R   + R  +   A
Sbjct: 405 STSWFRRQAGLQRETKTSSA 464


>TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
           {Arabidopsis thaliana;}, partial (55%)
          Length = 1276

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 28/129 (21%), Positives = 47/129 (35%), Gaps = 6/129 (4%)
 Frame = +2

Query: 46  SKDEEHDWFDRNALYERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNR 105
           S+   +D ++R   +  ++      S S + S  +    + R    P   +    D+++ 
Sbjct: 509 SRSRSYDKYERGDRHRGRDRDYRRRSRSRSASLDYKGRGRGRYDDEPSRSRSRSVDSRSP 688

Query: 106 RNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGR------VRSKRDRSRSRSLRL 159
               P       PKRSVS  +S +    P         R       RS   R R  + R 
Sbjct: 689 ARRSPSPRRSPSPKRSVSPKRSTSPRKSPRGESPDNRSRDGRSPTPRSVSPRGRPVASRS 868

Query: 160 RNSRKSSID 168
            + RKS+ D
Sbjct: 869 PSPRKSNGD 895


>BI418305 
          Length = 437

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 24/83 (28%), Positives = 36/83 (42%), Gaps = 1/83 (1%)
 Frame = +1

Query: 55  DRNALYERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNI 114
           D+       ++  G+T +ST N    SL L               T+A N   +KP   +
Sbjct: 76  DQRLTTRPNQAPHGATLTSTRNHGTLSLTL---------------TNAANGSPNKPTPTV 210

Query: 115 KLFPKRS-VSVTKSVTSHAEPSS 136
              PKRS VS+ +S +  A+P S
Sbjct: 211 NAAPKRSLVSMLRSKSFIAKPIS 279


>BP037373 
          Length = 488

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 17/76 (22%), Positives = 32/76 (41%)
 Frame = -3

Query: 92  PKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDR 151
           P P +P+FT +   R  +PC  +  F            + ++P  P         ++   
Sbjct: 282 PSPNRPNFTLSPPCRVRRPCPTLAPF------------TSSDPEGPSARNPSPPPTEPAA 139

Query: 152 SRSRSLRLRNSRKSSI 167
            +S SL + N+ K+S+
Sbjct: 138 VKSASLAISNATKTSV 91


>TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%)
          Length = 514

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 36/132 (27%)
 Frame = +3

Query: 64  ESTKGSTSSSTTNSQRFSLNL-----------------KSRIIGLPKPQKPSFTDAKNRR 106
           ES   S+SSS+++S   SLN                  + R  G P P  P+   A    
Sbjct: 60  ESLSSSSSSSSSSSSPLSLNQISPPNAPPS*LSAPPSPEERFSGTPPPPPPATGSASTAT 239

Query: 107 NHKPCNNIKLFPKR-------------------SVSVTKSVTSHAEPSSPKVSCMGRVRS 147
              P ++    P                     SVSV+    +H+ P+SP         S
Sbjct: 240 PTPPTSSRSASPPSPSPANSHMASSPPSPTSALSVSVSTPSPAHSPPTSPPAPRSATSTS 419

Query: 148 KRDRSRSRSLRL 159
            R  S   S RL
Sbjct: 420 SRISSPVSSRRL 455


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.311    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,521,101
Number of Sequences: 28460
Number of extensions: 62352
Number of successful extensions: 437
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of query: 268
length of database: 4,897,600
effective HSP length: 89
effective length of query: 179
effective length of database: 2,364,660
effective search space: 423274140
effective search space used: 423274140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)


Lotus: description of TM0010.15