TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0010.10
         (289 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV417593                                                              117  3e-27
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ...    80  4e-16
TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), par...    64  4e-11
TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribos...    60  4e-10
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)           55  1e-08
BP034655                                                               55  1e-08
TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p...    54  3e-08
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    54  4e-08
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    54  4e-08
BP047377                                                               53  7e-08
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    52  2e-07
TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding prot...    50  3e-07
BP036655                                                               50  6e-07
BI419822                                                               50  6e-07
TC19344 weakly similar to GB|AAA34838.1|172092|YSCPABPG polyaden...    48  2e-06
TC10057 similar to UP|Q41124 (Q41124) Chloroplast RNA binding pr...    48  2e-06
BP085186                                                               48  2e-06
TC16073 similar to UP|Q9FJN9 (Q9FJN9) Poly(A)-binding protein II...    47  5e-06
BP031757                                                               46  6e-06
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)           46  6e-06

>AV417593 
          Length = 423

 Score =  117 bits (292), Expect = 3e-27
 Identities = 51/81 (62%), Positives = 67/81 (81%)
 Frame = +2

Query: 209 WTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKL 268
           W  ED++K V + GPGV ++EL+KD+++   NRGFAFI+YYNHACAE+SRQKM +  FKL
Sbjct: 5   WGEEDLRKTVTEAGPGVTAVELVKDVKNINNNRGFAFIDYYNHACAEHSRQKMMSPTFKL 184

Query: 269 ENNAPTVSWADPRNSESSAVS 289
            +NAPTVSWADP+N++SSA S
Sbjct: 185 GDNAPTVSWADPKNADSSASS 247


>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
           (31%)
          Length = 727

 Score = 80.1 bits (196), Expect = 4e-16
 Identities = 54/185 (29%), Positives = 89/185 (47%), Gaps = 18/185 (9%)
 Frame = +1

Query: 12  VTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEE 71
           +T +    P+ +   E P     +++ +    +E E E EE  EEEE E+EE EE EEEE
Sbjct: 103 ITKKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEE 282

Query: 72  EEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHG-------------- 117
           EEEEEEEEVE E++  D E    +    + + K++   LLA                   
Sbjct: 283 EEEEEEEEVEAEAEEEDDEP---IQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADE 453

Query: 118 ----SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
                ++++ G+  + +   L    Q  G + + + +  K +G+ KGY F+ FK++  A 
Sbjct: 454 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 633

Query: 174 QAIEE 178
            A++E
Sbjct: 634 NALKE 648


>TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), partial (37%)
          Length = 1779

 Score = 63.5 bits (153), Expect = 4e-11
 Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 53/317 (16%)
 Frame = +2

Query: 8   RQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVED------ 61
           +  +  A + E  E + E E     D+ V+ + D +     E E  +++E +ED      
Sbjct: 197 QSNNTMAVDEEPEEQDQETEDQPQIDDAVEEEQDPEAPATTESEPQQQQETLEDNADAPN 376

Query: 62  -----------EEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEK--KKHA 108
                      E V       EEEEEEE++E E +P    E +    T +++    K+ A
Sbjct: 377 ESSAAAAAAASESVANGSNNNEEEEEEEDLELEEEPV---ERLLEPFTREQLHSLVKQAA 547

Query: 109 E-----------LLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 157
           E           L  + P   ++++ G+  + + E L       GE+ + + +  K +G+
Sbjct: 548 EKYPDFVENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGK 727

Query: 158 GKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCS------------------SSQAKHR 199
            KGYAF+ FK ++   +A++  N  +  G +   S                  S   + +
Sbjct: 728 SKGYAFILFKHRDGCRRALK--NPQKKIGNRTTSSQLASAGPVPATPPNAPPVSEYTQRK 901

Query: 200 LFIGNIPKKWTVEDMK-----KVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACA 254
           +F+ N+     +E +K     K   +V  G + ++     +++GR +GFA   Y +    
Sbjct: 902 IFVSNVSS--DIEPLKLLEFFKQFGEVEDGPLGLD-----KNTGRPKGFALFVYRS---V 1051

Query: 255 EYSRQKMSNSNFKLENN 271
           E +++ +   N + E +
Sbjct: 1052ESAKKALEEPNKEYEGH 1102


>TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribosomal
           protein 2, chloroplast precursor (PSRP-2), partial (68%)
          Length = 1104

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 38/165 (23%), Positives = 82/165 (49%), Gaps = 20/165 (12%)
 Frame = +2

Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
           +Y+G I   ++ ++L    Q    V +  +M  K SG  + +AFV  KT E A+ AIE+L
Sbjct: 236 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 415

Query: 180 NNSEFKGKKIKCSSSQ--------------------AKHRLFIGNIPKKWTVEDMKKVVA 219
           N ++  G++IK + ++                    + +++++GN+ K  T + +K   +
Sbjct: 416 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 595

Query: 220 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS 264
           + G  V+S ++ + +  + ++ GF F+ + +    E +    +N+
Sbjct: 596 EKGK-VLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 724



 Score = 37.0 bits (84), Expect = 0.004
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = +2

Query: 192 SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFI 246
           + S+A  RL++GNIP+  T +++  +V +    V   E++ D + SGR+R FAF+
Sbjct: 212 TQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYD-KYSGRSRRFAFV 370


>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
          Length = 1008

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 28/65 (43%), Positives = 42/65 (64%)
 Frame = -2

Query: 20  PEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEE 79
           PE N E E+  D ++Q D D D++ ++E       E++  EDEE E VEEE+ E+EEE+E
Sbjct: 446 PEENGEDEEDEDGEDQEDDDDDDEDDDE-------EDDGGEDEEEEGVEEEDNEDEEEDE 288

Query: 80  VEEES 84
            +EE+
Sbjct: 287 EDEEA 273



 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 33/131 (25%), Positives = 59/131 (44%), Gaps = 28/131 (21%)
 Frame = -2

Query: 13  TAQNPESPEGNSEPEKPTDSDEQVDFDGDN---DQEEEIEYEE----------------- 52
           T    E  + ++E E   D +   D DGD    + EE++  E+                 
Sbjct: 656 TKSQSEDKQHDAEGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAGYGNNSNNKSNSKKA 477

Query: 53  --------VEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEK 104
                      EE  EDEE E+ E++E++++++E+ +EE    + EEE  V+  ++E E+
Sbjct: 476 PEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEE 297

Query: 105 KKHAELLALPP 115
           +   +  AL P
Sbjct: 296 EDEEDEEALQP 264



 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 25/81 (30%), Positives = 48/81 (58%)
 Frame = -2

Query: 14  AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEE 73
           + + ++PEG   P      +E  + + D D E++   E+ ++++E +DEE +  E+EEEE
Sbjct: 494 SNSKKAPEGG--PGAGAGPEENGEDEEDEDGEDQ---EDDDDDDEDDDEEDDGGEDEEEE 330

Query: 74  EEEEEEVEEESKPSDGEEEMR 94
             EEE+ E+E +  + EE ++
Sbjct: 329 GVEEEDNEDEEEDEEDEEALQ 267



 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 41/66 (61%)
 Frame = -2

Query: 41  DNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTND 100
           +N ++EE E  E +E+++ +DE+ +E E++  E+EEEE VEEE    + E+E   +    
Sbjct: 440 ENGEDEEDEDGEDQEDDDDDDEDDDE-EDDGGEDEEEEGVEEEDNEDEEEDEEDEEALQP 264

Query: 101 EVEKKK 106
             ++KK
Sbjct: 263 PKKRKK 246



 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = -2

Query: 6   GTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVE 65
           G  + D+++++      NS  +  +    +         EE  E EE E+ E+ ED++ +
Sbjct: 560 GEGEEDLSSEDGAGYGNNSNNKSNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDD 381

Query: 66  EVEEEEEEE--EEEEEVEEESKPSDGEEEMRVDHTNDEVEKKK 106
           + +++EE++  E+EEE   E + ++ EEE   D    +  KK+
Sbjct: 380 DEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEEALQPPKKR 252


>BP034655 
          Length = 517

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
 Frame = +1

Query: 41  DNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDG-EEEMRVDHTN 99
           D+D+EEE E EE EEEEE E+EE EE E+EE++EE+E+E      PS      +  + T+
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVAPSHRVSPNVHQNPTS 315

Query: 100 DEVE 103
           D VE
Sbjct: 316 DSVE 327



 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 26/43 (60%), Positives = 33/43 (76%)
 Frame = +1

Query: 37  DFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEE 79
           DF   +D EEE E EE EEEEE E+EE EE EE+EE++EE+E+
Sbjct: 121 DFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDED 249



 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 26/43 (60%), Positives = 34/43 (78%)
 Frame = +1

Query: 40  GDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEE 82
           G +D +EE E EE EEEEE E+EE EE EEE+EE++EE+E E+
Sbjct: 127 GLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255



 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 24/42 (57%), Positives = 33/42 (78%)
 Frame = +1

Query: 39  DGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEV 80
           D D ++EEE E EE EEEEE E+EE EE EE++EE+E+E+ +
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYI 261



 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 35/48 (72%)
 Frame = +1

Query: 30  TDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEE 77
           T +D  +  D + ++EEE E EE EEEEE E+EE E+ E++EE+E+E+
Sbjct: 112 TAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255



 Score = 33.1 bits (74), Expect = 0.057
 Identities = 13/41 (31%), Positives = 28/41 (67%)
 Frame = +1

Query: 23  NSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEE 63
           + + E+  + +E+ + + + ++EEE E E+ E++EE EDE+
Sbjct: 133 SDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255



 Score = 32.0 bits (71), Expect = 0.13
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 72  EEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSE 131
           +++EEEEE EEE +  + EEE   +   DE + ++  +   +P   S      +  N + 
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVAPSHRVSPNVHQNPTS 315

Query: 132 EDLRV 136
           + + V
Sbjct: 316 DSVEV 330



 Score = 32.0 bits (71), Expect = 0.13
 Identities = 13/59 (22%), Positives = 34/59 (57%)
 Frame = +1

Query: 9   QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEV 67
           + ++ A +  + +     +   + +E+ + + + ++EEE E EE +EE++ EDE+ + +
Sbjct: 85  RNEIAAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYI 261


>TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial
           (30%)
          Length = 603

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 40/161 (24%), Positives = 73/161 (44%)
 Frame = +2

Query: 37  DFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVD 96
           D DG +     + +E  +E  +  D         ++ +++E  V +  K S+ E E++  
Sbjct: 29  DVDGKSKCFGFVNFENADEAAKAVD-----ALNGKKFDDKEWYVGKAKKKSERELELKEQ 193

Query: 97  HTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESG 156
           H     E     +       G+ +Y+  + +NV +E LR      G ++  +IM+    G
Sbjct: 194 HEQSMQETVDKYQ-------GANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPH-G 349

Query: 157 EGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 197
             +G  FVAF T E A++A+ E+N     GK +  + +Q K
Sbjct: 350 VSRGSGFVAFSTPEEATRALGEMNGKMVDGKPLYVALAQKK 472


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 23/77 (29%), Positives = 43/77 (54%)
 Frame = +1

Query: 121 YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN 180
           ++GG+A       L     S GE+ + +++  +E+G  +G+ FV F ++E    AIE +N
Sbjct: 91  FVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMN 270

Query: 181 NSEFKGKKIKCSSSQAK 197
            +E  G+ I  + +QA+
Sbjct: 271 GNELDGRNITVNEAQAR 321



 Score = 27.7 bits (60), Expect = 2.4
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +1

Query: 194 SQAKHRLFIGNIPKKWTVED--MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNH 251
           +  ++R F+G +   WT +   +++  +  G  +I  +++ D + +GR+RGF F+ + + 
Sbjct: 70  ADVEYRCFVGGLA--WTTDSHTLEQAFSSYGE-IIDSKVVND-RETGRSRGFGFVTFTSE 237

Query: 252 ACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
                + + M+ +  +L+    TV+ A  R
Sbjct: 238 EAMRSAIEGMNGN--ELDGRNITVNEAQAR 321


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (85%)
          Length = 1917

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
 Frame = +2

Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
           ++I  +   +  + L     + G +   ++     SG+ KGY FV F+T+E A  AIE+L
Sbjct: 98  IFIKNLDKAIDHKALHDTFSTFGNILSCKVA-TDSSGQSKGYGFVQFETEEAAQNAIEKL 274

Query: 180 NNSEFKGKKI-----------KCSSSQAK-HRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
           N      K++           + S+ +AK + +F+ N+ +  T +++K V  + G  + S
Sbjct: 275 NGMLLNDKQVYVGPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGT-ITS 451

Query: 228 IELLKDLQSSGRNRGFAFIEYYN 250
             +++D    G+++ F F+ + N
Sbjct: 452 AVVMRD--GDGKSKCFGFVNFEN 514



 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
 Frame = +2

Query: 58  EVEDEEVEEVEEEEEEEEEEEE--VEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPP 115
           E  D+    VE    ++ +++E  V +  K S+ E+E++    N   +  K A   A   
Sbjct: 509 ENADDAARAVESLNGKKVDDKEWYVGKAQKKSEREQELK----NKFEQSMKEA---ADKY 667

Query: 116 HGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQA 175
            G+ +Y+  + +++++E L+    S G ++  ++M+   +G  +G  FVAF T E AS+A
Sbjct: 668 QGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMR-DPNGISRGSGFVAFSTPEEASRA 844

Query: 176 IEELNNSEFKGKKIKCSSSQAK 197
           + E+N      K +  + +Q K
Sbjct: 845 LLEMNGKMVVSKPLYVTLAQRK 910


>BP047377 
          Length = 564

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +3

Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
           V++G I  + +EE L   CQ VG V   R++  +E+G+ KGY F  +K +E A  A   L
Sbjct: 135 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 314

Query: 180 NNSEFKGKKIK 190
              E  G++++
Sbjct: 315 QGYEINGRQLR 347



 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +3

Query: 192 SSSQAKHR-LFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYN 250
           +SSQ++HR +F+GNIP   T E + ++  +VGP V+S  L+ D + +G+ +G+ F EY +
Sbjct: 108 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGP-VVSFRLVID-RETGKPKGYGFCEYKD 281

Query: 251 HACAEYSRQKM 261
              A  +R+ +
Sbjct: 282 EETALSARRNL 314


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 23/66 (34%), Positives = 44/66 (65%)
 Frame = +3

Query: 20  PEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEE 79
           P+G   P KP  +D + + D D ++++E E ++ +++++ + EE E+ ++++EEEE  EE
Sbjct: 216 PDG---PPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEE 386

Query: 80  VEEESK 85
           VE E K
Sbjct: 387 VEVEGK 404



 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 39/54 (72%)
 Frame = +3

Query: 43  DQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVD 96
           D EEE   E+ +EEE+ EDE+ ++ ++++++ EEEE+ +++ +  +G EE+ V+
Sbjct: 246 DNEEE---EDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVE 398



 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 20/67 (29%), Positives = 37/67 (54%)
 Frame = +3

Query: 11  DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEE 70
           ++    P  P      E+  D +E+ D D D+D +++ + +  EEE++ +D+E EE  EE
Sbjct: 207 EIYPDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEE 386

Query: 71  EEEEEEE 77
            E E ++
Sbjct: 387 VEVEGKD 407



 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 32/50 (64%)
 Frame = +3

Query: 61  DEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAEL 110
           D E EE ++EEE++E+E++ +++    DGEEE   D  ++E E  +  E+
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEV 395



 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 17/55 (30%), Positives = 35/55 (62%)
 Frame = +3

Query: 55  EEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
           EEEE +DEE ++ +E++++++++++  EE +  D ++E        EVE K  A+
Sbjct: 252 EEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVEGKDGAK 416



 Score = 38.9 bits (89), Expect = 0.001
 Identities = 20/61 (32%), Positives = 32/61 (51%)
 Frame = +3

Query: 5   PGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEV 64
           P    + V   N E  + + E +   + D+  D D D+ +EEE + ++ EEEE  E+ EV
Sbjct: 216 PDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEV 395

Query: 65  E 65
           E
Sbjct: 396 E 398


>TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
           partial (46%)
          Length = 1150

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 37/127 (29%), Positives = 61/127 (47%), Gaps = 4/127 (3%)
 Frame = +3

Query: 70  EEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNV 129
           EE+  + +  V   +  SDG +    D+ N+E  +          P  + VY+G + ++V
Sbjct: 243 EEKNSDNQNAVVLTNGSSDGGQ----DNNNEEAPENN--------PSYTTVYVGNLPHDV 386

Query: 130 SEEDLRVFCQ----SVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFK 185
           ++ +L   CQ      G + EVRI +       KG+ FV + T E A+ AI+  N    +
Sbjct: 387 TQAELH--CQFHALGAGVIEEVRIQR------DKGFGFVRYNTHEEAALAIQVANGRIVR 542

Query: 186 GKKIKCS 192
           GK +KCS
Sbjct: 543 GKTMKCS 563



 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 42/149 (28%)
 Frame = +3

Query: 145 SEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKC---------SSSQ 195
           S+ R+M   ++G  KGY FV+F+  + A  +I ++       ++I+C         SSS+
Sbjct: 66  SDARVMWDHKTGRSKGYGFVSFRDHQDAQSSINDMTGKWLGNRQIRCNWATKGAGGSSSE 245

Query: 196 AKH---------------------------------RLFIGNIPKKWTVEDMKKVVADVG 222
            K+                                  +++GN+P   T  ++      +G
Sbjct: 246 EKNSDNQNAVVLTNGSSDGGQDNNNEEAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG 425

Query: 223 PGVISIELLKDLQSSGRNRGFAFIEYYNH 251
            GVI    ++      R++GF F+ Y  H
Sbjct: 426 AGVIEEVRIQ------RDKGFGFVRYNTH 494


>BP036655 
          Length = 556

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 25/73 (34%), Positives = 40/73 (54%)
 Frame = -3

Query: 34  EQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEM 93
           E+     D D +E ++ EE   EE  +D+++ + E ++E EEE E   E  K  + EEE 
Sbjct: 410 EEEGLSDDGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIETEKEEEEEEEC 231

Query: 94  RVDHTNDEVEKKK 106
            V++  DE+  KK
Sbjct: 230 GVENVEDEMGVKK 192



 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 30/74 (40%), Positives = 41/74 (54%), Gaps = 7/74 (9%)
 Frame = -3

Query: 33  DEQVDFDGDNDQEEEIEYEEVEE-------EEEVEDEEVEEVEEEEEEEEEEEEVEEESK 85
           +E +  DGD+D+  + E E VEE        ++  D+EVEE  E E E E+EEE EEE  
Sbjct: 407 EEGLSDDGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIETEKEEEEEEECG 228

Query: 86  PSDGEEEMRVDHTN 99
             + E+EM V   N
Sbjct: 227 VENVEDEMGVKKFN 186



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = -3

Query: 18  ESPEGNSEPEKPTDSDEQV--DFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEE 75
           E    + + ++  D +E+V  ++  D+D  ++   +EVEEE E E E   E EEEEEEE 
Sbjct: 404 EGLSDDGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIET--EKEEEEEEEC 231

Query: 76  EEEEVEEE 83
             E VE+E
Sbjct: 230 GVENVEDE 207



 Score = 33.9 bits (76), Expect = 0.033
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -3

Query: 55  EEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALP 114
           EEE + D+     +++E  +EEEE VEE S     ++++  D ++DEVE++   E+    
Sbjct: 410 EEEGLSDDG----DDDEVVDEEEEVVEEWS----DDDDINDDESDDEVEEESETEIETEK 255

Query: 115 PHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE----GKGY 161
               E   G    NV +E        +G     R  + KESG     G GY
Sbjct: 254 EEEEEEECG--VENVEDE--------MGVKKFNRPSRCKESGNRDIFGDGY 132


>BI419822 
          Length = 380

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 21/77 (27%), Positives = 41/77 (52%)
 Frame = +2

Query: 121 YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN 180
           ++GG+A     E L       GE+ E +++  +E+G  +G+ FV F +++    AIE +N
Sbjct: 86  FVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQAMKDAIEAMN 265

Query: 181 NSEFKGKKIKCSSSQAK 197
                G+ I  + +Q++
Sbjct: 266 GQNLDGRNITVNEAQSR 316


>TC19344 weakly similar to GB|AAA34838.1|172092|YSCPABPG
           polyadenylate-binding protein {Saccharomyces
           cerevisiae;} , partial (18%)
          Length = 518

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 38/60 (63%)
 Frame = +3

Query: 117 GSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAI 176
           GS +Y+  I +NVS+E+LR    + G ++  ++MK  E G  +G+ FV F T E A++A+
Sbjct: 150 GSNIYVKNIDDNVSDEELRGHFSACGSITYAKVMK-DEKGISQGFGFVCFSTPEEANKAV 326


>TC10057 similar to UP|Q41124 (Q41124) Chloroplast RNA binding protein
           precursor, partial (49%)
          Length = 598

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 31/136 (22%), Positives = 59/136 (42%), Gaps = 11/136 (8%)
 Frame = +2

Query: 77  EEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRV 136
           +EEV   ++  DG  E +V+    E E              +++Y G +  +V    L  
Sbjct: 215 QEEVALAAEADDGLVEEKVEEVVAEEEANSSVN--------TKLYFGNLPYSVDSAQLAG 370

Query: 137 FCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSS-- 194
             +  G    + ++  ++SG+ +G+AFV     E  +  IE L+  EF G+ ++ + S  
Sbjct: 371 LIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDK 550

Query: 195 ---------QAKHRLF 201
                    + +H+LF
Sbjct: 551 PKPKEPLYPETEHKLF 598



 Score = 33.1 bits (74), Expect = 0.057
 Identities = 38/150 (25%), Positives = 67/150 (44%)
 Frame = +2

Query: 97  HTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESG 156
           +TN +  + K+  +LA       V    I   +S   L V   S   V++  +  A E+ 
Sbjct: 71  NTNVKCLRSKNCSVLASVSQSYLVEPLSIGGTISHNKLWVPRISAA-VAQEEVALAAEAD 247

Query: 157 EGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKK 216
           +G     V  K +E+ ++  EE N+S                +L+ GN+P       +  
Sbjct: 248 DG----LVEEKVEEVVAE--EEANSS-------------VNTKLYFGNLPYSVDSAQLAG 370

Query: 217 VVADVGPGVISIELLKDLQSSGRNRGFAFI 246
           ++ + G   + IE+L D + SG++RGFAF+
Sbjct: 371 LIEEYGSAEL-IEVLYD-RDSGKSRGFAFV 454


>BP085186 
          Length = 388

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = -1

Query: 39  DGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKP 86
           DG+ ++EEE E EE EEEEE E+EE E  EE+ EEE    +  E   P
Sbjct: 274 DGEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEGEGENP 131



 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 25/44 (56%), Positives = 28/44 (62%)
 Frame = -1

Query: 49  EYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEE 92
           E  E EEEEE E+EE EE EEEE E EEE+  EE     +GE E
Sbjct: 268 EGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEGEGE 137



 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 25/53 (47%), Positives = 34/53 (63%)
 Frame = -1

Query: 32  SDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEES 84
           S +  D +G+ ++EEE E EE EEEEE E+ E EE E+ EEE    +E E E+
Sbjct: 289 SPDNADGEGNEEEEEEEEEEEEEEEEEEEEAEPEE-EKNEEENVNTQEGEGEN 134



 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = -1

Query: 33  DEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEE 92
           D  ++ +G N     +  + +  +    +   EE EEEEEEEEEEEE EEE++P + + E
Sbjct: 352 DLAINLEGSNPYARIVNGKLISPDNADGEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNE 173



 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 24/69 (34%), Positives = 38/69 (54%)
 Frame = -1

Query: 11  DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEE 70
           ++   NP +   N +   P ++D + + + + ++EEE E EE EEEEE E EE +  EE 
Sbjct: 340 NLEGSNPYARIVNGKLISPDNADGEGNEEEEEEEEEEEEEEE-EEEEEAEPEEEKNEEEN 164

Query: 71  EEEEEEEEE 79
              +E E E
Sbjct: 163 VNTQEGEGE 137



 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 72  EEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKK 105
           E  EEEEE EEE +  + EEE   +   ++ E++
Sbjct: 268 EGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEE 167



 Score = 25.8 bits (55), Expect = 9.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 67  VEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKK 106
           +  +  + E  EE EEE +  + EEE   +    E EK +
Sbjct: 292 ISPDNADGEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNE 173


>TC16073 similar to UP|Q9FJN9 (Q9FJN9) Poly(A)-binding protein II-like,
           partial (59%)
          Length = 529

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
 Frame = +1

Query: 43  DQEEEIEYEEVEEEEEVE-----DEEVEEVEEE----------EEEEEEEEEVEEES--- 84
           DQEE   Y     +EEVE     D + E+ + +          E+ ++  +E+EEE+   
Sbjct: 55  DQEEHEVYGADIPDEEVEMDADADADAEQQDHDFASNHPNKDLEDMKKRLKEIEEEASAL 234

Query: 85  KPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEV 144
           +    + E  +    D       AE   +   G  +Y+G +    + E+++   QS G V
Sbjct: 235 REMQAKVEKDMGAVQDAGSSATQAEKEEV--DGRSIYVGNVDYACTPEEVQQHFQSCGTV 408

Query: 145 SEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKG 186
           + V I+  K  G+ KG+A+V F   E    A+  LN SE  G
Sbjct: 409 NRVTILTDK-FGQPKGFAYVEFVEAEAVQNAV-MLNESELHG 528


>BP031757 
          Length = 507

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 28/88 (31%), Positives = 42/88 (46%)
 Frame = +2

Query: 3   KMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDE 62
           KM   R   V   + E  E   +  KP         + DN+ ++  +YEE   EEE + +
Sbjct: 56  KMVNRRFTQVATSDDEEEETPPQQLKPRKRKRMKLLEEDNEDKDGEDYEE---EEEKKKK 226

Query: 63  EVEEVEEEEEEEEEEEEVEEESKPSDGE 90
           +    ++EEEEEEE+EE E    P D +
Sbjct: 227 KKSRKKKEEEEEEEQEEPESPQPPEDAK 310



 Score = 31.6 bits (70), Expect = 0.16
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +2

Query: 42  NDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEE-EEEEVEEESKPSDGEEEMRVDHTND 100
           +D+EEE   ++++  +    + +EE  E+++ E+ EEEE +++ K S  ++E   +   +
Sbjct: 95  DDEEEETPPQQLKPRKRKRMKLLEEDNEDKDGEDYEEEEEKKKKKKSRKKKEEEEEEEQE 274

Query: 101 EVEKKKHAE 109
           E E  +  E
Sbjct: 275 EPESPQPPE 301


>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
          Length = 735

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
 Frame = +3

Query: 15  QNPESPEGNSEPEK-----PTDSDEQVDFDGDNDQEEEIEYEEVEEEEEV-EDEEVEEVE 68
           Q  E  E + E E+     PT    +V+   + D+EEE   EE EEEE V EDE+  E E
Sbjct: 330 QGVEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDE 509

Query: 69  EEEEEEEEEEEVEEESKPSDGE 90
           +E+EEEE    VE + +  D +
Sbjct: 510 DEDEEEEGVVVVEVKGRKVDSK 575



 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
 Frame = +3

Query: 51  EEVEEEEEVEDEE----------VEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTND 100
           EE EE+EE E+E+          VE  +EE+EEEE  EE EEE +    +E+   D   D
Sbjct: 339 EEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDED 518

Query: 101 EVEK 104
           E E+
Sbjct: 519 EEEE 530



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
 Frame = +3

Query: 45  EEEIEYEEVEEEE-----------EVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEE 92
           EEE E EE EEE+           E   EE EE E  EEEEEEEE V E+ + ++ E+E
Sbjct: 339 EEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDE 515



 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 29/46 (62%)
 Frame = +3

Query: 64  VEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
           VE++ +  EEEEE+EE EEE  P       RV+H  +E E++++ E
Sbjct: 315 VEKLNQGVEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGE 452



 Score = 33.5 bits (75), Expect = 0.043
 Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 11/84 (13%)
 Frame = +3

Query: 53  VEEEEEVEDEEVEEVEE--------EEEEEEEEEEVEEESKPSDGEEEMRVDH---TNDE 101
           VEEEEE E++E E+           E  +EE+EE  EE  +  + EEE+ V+      DE
Sbjct: 336 VEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEE--EENGEEEEEEEEVVVEDEQGNEDE 509

Query: 102 VEKKKHAELLALPPHGSEVYIGGI 125
            E ++   ++ +   G +V   G+
Sbjct: 510 DEDEEEEGVVVVEVKGRKVDSKGL 581



 Score = 30.0 bits (66), Expect = 0.48
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 48  IEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDG 89
           I+Y + E+E+E EDE+    ++E   E+EE +   E++P  G
Sbjct: 227 IDYLDEEDEDEDEDED----DDERGREKEEAQAG*EAEPGGG 340


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.303    0.125    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,010,302
Number of Sequences: 28460
Number of extensions: 52007
Number of successful extensions: 3460
Number of sequences better than 10.0: 359
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of query: 289
length of database: 4,897,600
effective HSP length: 89
effective length of query: 200
effective length of database: 2,364,660
effective search space: 472932000
effective search space used: 472932000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)