BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0009.4
(89 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 34 0.004
TC19341 similar to UP|Q9CAD1 (Q9CAD1) GMP synthase, partial (28%) 34 0.005
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 34 0.005
TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%) 33 0.007
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 33 0.007
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 33 0.007
TC10183 similar to UP|Q9LV44 (Q9LV44) Similarity to signal pepti... 33 0.009
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 33 0.011
TC10688 similar to UP|AAR10812 (AAR10812) Superoxide dismutase, ... 32 0.015
TC7814 similar to UP|Q9LKJ6 (Q9LKJ6) Water-selective transport i... 32 0.015
BP054137 32 0.015
TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-r... 32 0.015
TC15376 weakly similar to UP|Q7SYH2 (Q7SYH2) Cystatin domain fet... 32 0.025
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti... 32 0.025
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 31 0.033
TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich... 31 0.033
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 31 0.043
TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 31 0.043
BP070010 31 0.043
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 30 0.057
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 34.3 bits (77), Expect = 0.004
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E +D DD DED+D D + D+G + ++D D +
Sbjct: 255 EEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDE 365
Score = 32.3 bits (72), Expect = 0.015
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 87
E + D+ D+ D+D+D D +G+ D+D+D + +G
Sbjct: 258 EEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEG 377
Score = 30.4 bits (67), Expect = 0.057
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = +3
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E E DD D+ ++D+D D + D + D+D D +
Sbjct: 252 EEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEE 368
Score = 28.1 bits (61), Expect = 0.28
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 48 EGEGDDGGSVSDDSDE-DNDSGDSEGDNGGDNDNDGGDSD 86
+ E +D DD D+ D+D G+ E D+ D++ + G +
Sbjct: 267 DDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEE 386
Score = 26.9 bits (58), Expect = 0.63
Identities = 10/35 (28%), Positives = 19/35 (53%)
Frame = +3
Query: 52 DDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
D+ DD +ED++ D + D+ D+D + + D
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDD 350
>TC19341 similar to UP|Q9CAD1 (Q9CAD1) GMP synthase, partial (28%)
Length = 484
Score = 33.9 bits (76), Expect = 0.005
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = -3
Query: 8 LAAVEEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDS 67
L AV + D+ G GP+ A+ V V GE DDGG D E +
Sbjct: 227 LQAVADTEDSDAVGAGPV----EEAVREGRGVGSVDGVGAAGEDDDGGVEFGDGGEGGGA 60
Query: 68 GDSEGDNGGDND 79
GD+EG++G +D
Sbjct: 59 GDAEGEDGEGSD 24
Score = 25.8 bits (55), Expect = 1.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 49 GEGDDGGSVSDDSDEDNDSGDSEGD 73
G+G +GG D ED + D+ D
Sbjct: 86 GDGGEGGGAGDAEGEDGEGSDAASD 12
Score = 23.1 bits (48), Expect = 9.1
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Frame = -3
Query: 31 MAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEG-------DNGGDNDNDGG 83
+A E ++AV + + G V + E G +G D+GG DGG
Sbjct: 254 IAAEALDEKLQAVADTEDSDAVGAGPVEEAVREGRGVGSVDGVGAAGEDDDGGVEFGDGG 75
Query: 84 DSDG 87
+ G
Sbjct: 74 EGGG 63
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 33.9 bits (76), Expect = 0.005
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND 81
E + DD DDSDE+ D DS+ D +D D
Sbjct: 9 EDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTD 110
Score = 29.3 bits (64), Expect = 0.13
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 52 DDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
D+ D+ DED+DS + D D+D+D DSD
Sbjct: 3 DEEDDSDDEDDEDDDSDEEMDD--ADSDSDESDSD 101
>TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%)
Length = 517
Score = 33.5 bits (75), Expect = 0.007
Identities = 13/27 (48%), Positives = 20/27 (73%)
Frame = +1
Query: 55 GSVSDDSDEDNDSGDSEGDNGGDNDND 81
GS SDD D+D+DS D + D+ D+D++
Sbjct: 118 GSSSDDDDDDDDSEDEDDDDNEDDDDE 198
Score = 30.0 bits (66), Expect = 0.074
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 56 SVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGGW 89
S+SD S D+D D + ++ D+DN+ D D W
Sbjct: 106 SLSDGSSSDDDDDDDDSEDEDDDDNE--DDDDEW 201
Score = 29.6 bits (65), Expect = 0.097
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +1
Query: 53 DGGSVSDDSDEDNDSGDSEGDNGGDND 79
DG S DD D+D+ + + DN D+D
Sbjct: 115 DGSSSDDDDDDDDSEDEDDDDNEDDDD 195
Score = 29.6 bits (65), Expect = 0.097
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +1
Query: 53 DGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGGW 89
D S SD+D+D DSE ++ DN++D + W
Sbjct: 103 DSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDEW*SWW 213
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 33.5 bits (75), Expect = 0.007
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Frame = +2
Query: 48 EGEGDDG-----------GSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+GE DDG G DD +++ + G EG GG D D D D
Sbjct: 44 DGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDDDD 193
Score = 33.1 bits (74), Expect = 0.009
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +2
Query: 57 VSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+S D D+D+D D +GD D+D GG D
Sbjct: 17 MSGDEDDDDDGEDDDGDEDDDDDAPGGGDD 106
Score = 32.7 bits (73), Expect = 0.011
Identities = 12/42 (28%), Positives = 22/42 (51%)
Frame = +2
Query: 47 LEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
+ G+ DD DD +++D D+ G D+D + + +GG
Sbjct: 17 MSGDEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGG 142
Score = 32.3 bits (72), Expect = 0.015
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 7/46 (15%)
Frame = +2
Query: 48 EGEGDD---GGSVSDDSDEDNDSGDSEGDNGG----DNDNDGGDSD 86
E + DD GG DD +++ + G EG GG D+D+D D D
Sbjct: 68 EDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDD 205
Score = 28.9 bits (63), Expect = 0.16
Identities = 29/103 (28%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Frame = +2
Query: 13 EGGRGDSGGGGP-------------------LWYILVMAMTTTSEVVEAVVVVLEGEGDD 53
EGGRG GGG P L ++ T + E E E D+
Sbjct: 146 EGGRG--GGGDPDDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDE 319
Query: 54 GGSVSDDSDEDNDSGDSEG----------DNGGDNDNDGGDSD 86
G D DND G+ G D GD+D+D G D
Sbjct: 320 G------DDNDNDDGEKAGVPSKRKRSDKDGSGDDDSDDGGED 430
Score = 26.2 bits (56), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Frame = +2
Query: 50 EGDDGGSVSDDSDEDND-SGDSEGDNGGDND 79
+G+ G S D D SGD + D+GG++D
Sbjct: 341 DGEKAGVPSKRKRSDKDGSGDDDSDDGGEDD 433
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 33.5 bits (75), Expect = 0.007
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 59 DDSDEDNDSGDSEGDNGGDNDNDGGD 84
DD D+D+D D + D+ D+D+D GD
Sbjct: 83 DDDDDDDDDDDDDDDDDDDDDDDDGD 160
Score = 32.0 bits (71), Expect = 0.019
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 59 DDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
DD D+D+D D + D+ D D DSD G
Sbjct: 98 DDDDDDDDDDDDDDDDDDDGDKKQPDSDTG 187
Score = 28.9 bits (63), Expect = 0.16
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDG 82
+ + DD DD D+D+D D +GD + + G
Sbjct: 83 DDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTG 187
Score = 28.5 bits (62), Expect = 0.22
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +2
Query: 56 SVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 87
S D D+D+D D + D D+D+D D DG
Sbjct: 71 SPKPDDDDDDDDDDDDDD---DDDDDDDDDDG 157
Score = 27.3 bits (59), Expect = 0.48
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 64 DNDSGDSEGDNGGDNDNDGGDSDGG 88
D+D D + D+ D+D+D D D G
Sbjct: 83 DDDDDDDDDDDDDDDDDDDDDDDDG 157
>TC10183 similar to UP|Q9LV44 (Q9LV44) Similarity to signal peptidase,
partial (24%)
Length = 497
Score = 33.1 bits (74), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Frame = +2
Query: 60 DSDEDN----DSGDSEGDNGGDNDNDGGDSD 86
DS +D DSG GD GGD+D+ GGD D
Sbjct: 200 DSGKDTKTVLDSGGGGGDGGGDDDDGGGDRD 292
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 32.7 bits (73), Expect = 0.011
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 49 GEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
G G G + DE+++ G+ + D+ D+++D + DGG
Sbjct: 467 GPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGG 348
Score = 32.3 bits (72), Expect = 0.015
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGG 83
E +DG DD D+D D D E D+GG+++ + G
Sbjct: 422 EDEDGEDQEDDDDDDED--DDEEDDGGEDEEEEG 327
Score = 28.1 bits (61), Expect = 0.28
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = -2
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E + DD DD +ED+ D E + + DN+ + D
Sbjct: 407 EDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEED 291
Score = 28.1 bits (61), Expect = 0.28
Identities = 11/36 (30%), Positives = 18/36 (49%)
Frame = -2
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGG 83
+ EG+DG D D+D D EG+ +++ G
Sbjct: 626 DAEGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAG 519
>TC10688 similar to UP|AAR10812 (AAR10812) Superoxide dismutase, partial
(91%)
Length = 822
Score = 32.3 bits (72), Expect = 0.015
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 4/59 (6%)
Frame = -1
Query: 34 TTTSEVVEAVVVVLEGEGDD----GGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
T+ S + VV GEGDD GG++ D D EG G + GG+ +GG
Sbjct: 294 TSDSNIHSCWSVVFLGEGDDAFDGGGALEDGDGFLGGGEDGEGFGG*EGSEVGGEFEGG 118
>TC7814 similar to UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic
membrane protein 1, partial (37%)
Length = 660
Score = 32.3 bits (72), Expect = 0.015
Identities = 18/41 (43%), Positives = 21/41 (50%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
E EGD G V+ D+ GD EG+ GD GGD GG
Sbjct: 654 EXEGDXGVDVAAGDVGDDXDGDEEGECMGDG---GGDEXGG 541
>BP054137
Length = 474
Score = 32.3 bits (72), Expect = 0.015
Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 2/64 (3%)
Frame = -2
Query: 28 ILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND--GGDS 85
++++A+T VV +V V+E G GG+ S D + + GDND+D G S
Sbjct: 470 VVIVAITM---VVSTMVAVME-RGGGGGNGSRGDDGSGEWWRQRNGSSGDNDDDINNGGS 303
Query: 86 DGGW 89
G W
Sbjct: 302 GGAW 291
Score = 23.9 bits (50), Expect = 5.3
Identities = 11/16 (68%), Positives = 13/16 (80%), Gaps = 1/16 (6%)
Frame = -1
Query: 74 NGGDN-DNDGGDSDGG 88
NGGD+ DNDG +DGG
Sbjct: 474 NGGDSGDNDGCINDGG 427
>TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol
4-reductase-like (Cinnamoyl-CoA reductase-like protein),
partial (21%)
Length = 479
Score = 32.3 bits (72), Expect = 0.015
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = -1
Query: 40 VEAVVVVLEGEGDDGGSVSDDSDEDNDSG-----DSEGDNGGDNDNDGGDSDG 87
VE V++G GD GG V D ED D+G D E + GG +GG DG
Sbjct: 155 VEDAGAVVDGAGD-GGGVEDVGGEDGDAGMGFRVDGE-EVGGVGGGEGGGMDG 3
>TC15376 weakly similar to UP|Q7SYH2 (Q7SYH2) Cystatin domain fetuin-like
protein, partial (6%)
Length = 582
Score = 31.6 bits (70), Expect = 0.025
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -3
Query: 62 DEDNDSGDSEGDNGGDNDNDGGDSDGG 88
+ED+ GD +GD GD + GG GG
Sbjct: 457 EEDDGDGDGDGDGVGDGGDSGGGGGGG 377
>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
Length = 1294
Score = 31.6 bits (70), Expect = 0.025
Identities = 25/90 (27%), Positives = 39/90 (42%), Gaps = 10/90 (11%)
Frame = -2
Query: 10 AVEEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEG-----EGDDGGSVSDDSDED 64
AV +G R D G W++ V E V V+ G +G GG + S E+
Sbjct: 384 AVVDGRRRDEAFGD-FWWVEGEVFFWVCGVEEGGVNVVGGFAFGGDGGGGGGGEEGSGEE 208
Query: 65 NDSGD-----SEGDNGGDNDNDGGDSDGGW 89
+ G+ EG+ G + + G+S GG+
Sbjct: 207 REEGEFGG*GEEGEG*GGAEGERGESSGGY 118
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial
(3%)
Length = 504
Score = 31.2 bits (69), Expect = 0.033
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +3
Query: 60 DSDEDNDSGDSEGDNGGDNDNDGGDSD 86
D D D D +SE + D+D+DG D D
Sbjct: 57 DDDSDPDDAESEDEEDDDDDDDGDDED 137
Score = 27.7 bits (60), Expect = 0.37
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+ + DD S ++ D+D+D GD E G DSD
Sbjct: 63 DSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSD 179
Score = 25.4 bits (54), Expect = 1.8
Identities = 9/27 (33%), Positives = 16/27 (58%)
Frame = +3
Query: 53 DGGSVSDDSDEDNDSGDSEGDNGGDND 79
D S DD++ +++ D + D+G D D
Sbjct: 57 DDDSDPDDAESEDEEDDDDDDDGDDED 137
>TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich
glycoprotein (HRGP) (Fragment), partial (8%)
Length = 417
Score = 31.2 bits (69), Expect = 0.033
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +3
Query: 61 SDEDNDSGDSEGDNGGDNDNDGGD 84
+D++N+ GD G GGD + GGD
Sbjct: 288 NDDNNNGGDGSGGGGGDEGSGGGD 359
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 30.8 bits (68), Expect = 0.043
Identities = 26/77 (33%), Positives = 33/77 (42%)
Frame = -2
Query: 12 EEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSE 71
E G G+ GG L + T+E + V E EGD G V+ + GD E
Sbjct: 455 ESGDEGEEQGGDDGSEKLSDDVDDTAEEGD-VTADEEAEGDGGVDVAAGDVGADGDGDEE 279
Query: 72 GDNGGDNDNDGGDSDGG 88
G+ GD GGD GG
Sbjct: 278 GECVGDG---GGDEAGG 237
>TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 526
Score = 30.8 bits (68), Expect = 0.043
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Frame = -1
Query: 48 EGEGDDGG---SVSDDSDE----DNDSGDSEGD 73
E EGDD G S SDD+DE D D GD +GD
Sbjct: 247 EDEGDDDGEEESNSDDADETADEDMDGGDGDGD 149
Score = 26.6 bits (57), Expect = 0.82
Identities = 14/38 (36%), Positives = 17/38 (43%), Gaps = 13/38 (34%)
Frame = -1
Query: 63 EDNDSGDSEGDNGG-------------DNDNDGGDSDG 87
E + G+ EGD+ G D D DGGD DG
Sbjct: 265 ESSTRGEDEGDDDGEEESNSDDADETADEDMDGGDGDG 152
>BP070010
Length = 519
Score = 30.8 bits (68), Expect = 0.043
Identities = 18/42 (42%), Positives = 22/42 (51%), Gaps = 2/42 (4%)
Frame = -1
Query: 49 GEGDDGGSVSDDSDED--NDSGDSEGDNGGDNDNDGGDSDGG 88
GEGDD S S+D + ND + GG D+D D DGG
Sbjct: 474 GEGDDWDSDSEDDLQIVLNDDNRMAMERGGVVDDDDEDEDGG 349
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 30.4 bits (67), Expect = 0.057
Identities = 10/30 (33%), Positives = 21/30 (69%)
Frame = +2
Query: 57 VSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+++ SDE+++ +++GD D D++G D D
Sbjct: 614 INNMSDEEDEGEEADGDGDADKDDNGDDDD 703
Score = 28.5 bits (62), Expect = 0.22
Identities = 13/49 (26%), Positives = 27/49 (54%)
Frame = +2
Query: 33 MTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND 81
M +EV + + V+ D+ D+ +E + GD++ D+ GD+D++
Sbjct: 572 MHRKAEVKDIITDVINNMSDE----EDEGEEADGDGDADKDDNGDDDDE 706
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.305 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,124,739
Number of Sequences: 28460
Number of extensions: 14090
Number of successful extensions: 491
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of query: 89
length of database: 4,897,600
effective HSP length: 65
effective length of query: 24
effective length of database: 3,047,700
effective search space: 73144800
effective search space used: 73144800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0009.4