BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.6
(262 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV779582 40 3e-04
TC11992 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial ... 39 0.001
BP030058 38 0.002
CN825698 37 0.005
TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12... 35 0.017
TC11135 homologue to UP|SCRK_SOLTU (P37829) Fructokinase , part... 35 0.017
BP054137 35 0.017
CB829198 34 0.022
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 33 0.038
AV409412 33 0.038
AV775527 33 0.038
AV410227 33 0.050
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1... 33 0.050
TC13540 similar to PIR|C86255|C86255 protein F12F1.11 [imported]... 33 0.050
TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich... 33 0.065
AW719782 33 0.065
TC13025 similar to UP|Q9EMA1 (Q9EMA1) Envelope glycoprotein (Fra... 32 0.11
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 32 0.11
AW720491 32 0.14
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l... 32 0.14
>AV779582
Length = 345
Score = 40.4 bits (93), Expect = 3e-04
Identities = 17/30 (56%), Positives = 21/30 (69%)
Frame = -2
Query: 16 LIKTRTDQNCLGWVGSYFVNFHLRIRTNPI 45
LI RT +CLGW+G F +FH R RT+PI
Sbjct: 185 LIMIRTHYHCLGWIGLDFTSFHPRTRTHPI 96
>TC11992 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial (4%)
Length = 560
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/32 (59%), Positives = 19/32 (59%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGS 227
GGD GDG GGG G G GGDE SD GS
Sbjct: 333 GGDGGDGVGRGGGGGGGG---GGDESKSDGGS 247
>BP030058
Length = 455
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/31 (54%), Positives = 18/31 (57%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNG 226
GG GDGG GGG GHG G GG+ D G
Sbjct: 319 GGGGGDGGG-GGGDGHGSGGGGGEGDGGGGG 408
Score = 33.9 bits (76), Expect = 0.029
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHG-DKGDGGDEDDSDNGSDSG 230
GGD G GG +G GSG G +GDGG S S G
Sbjct: 328 GGDGGGGGGDGHGSGGGGGEGDGGGGGGSPQVSPQG 435
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 197 GDSGDGGNNGGGSGHGDKGD----GGDEDDSDNGSDSGA 231
G G+GG GGG G G GD GG + D G G+
Sbjct: 298 GGGGEGGGGGGGDGGGGGGDGHGSGGGGGEGDGGGGGGS 414
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 197 GDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
G G GG GGG G G GGD S G G
Sbjct: 289 GYFGGGGEGGGGGGGDGGGGGGDGHGSGGGGGEG 390
>CN825698
Length = 704
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALI 233
G D G GG GGG + GDGG + S++G GAL+
Sbjct: 173 GSDGGGGGGGGGGGAEAEDGDGGGDLSSESG---GALM 69
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 198 DSGDGGNNGGGSGHGDKGDGGDEDDSDNGSD 228
+S GG++GGG G G G G + +D D G D
Sbjct: 188 ESEGGGSDGGGGG-GGGGGGAEAEDGDGGGD 99
>TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12470
{Arabidopsis thaliana;}, partial (18%)
Length = 507
Score = 34.7 bits (78), Expect = 0.017
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 197 GDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDS 229
G G GG +GGG G G GDG ED N ++
Sbjct: 231 GGGGTGGGDGGGGGGGGGGDGESEDRDRNRGEA 329
Score = 29.3 bits (64), Expect = 0.72
Identities = 11/21 (52%), Positives = 12/21 (56%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGD 216
GGD G GG GGG G + D
Sbjct: 249 GGDGGGGGGGGGGDGESEDRD 311
>TC11135 homologue to UP|SCRK_SOLTU (P37829) Fructokinase , partial (33%)
Length = 402
Score = 34.7 bits (78), Expect = 0.017
Identities = 15/28 (53%), Positives = 16/28 (56%)
Frame = -1
Query: 195 VGGDSGDGGNNGGGSGHGDKGDGGDEDD 222
VGG + G G G GD GDGGDE D
Sbjct: 204 VGGSAAGGFEEAGSLGEGDAGDGGDEVD 121
>BP054137
Length = 474
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = -2
Query: 173 MLTVVAATKVMTKVVVAPTMVVVGGDSGDGGNNGGGSG------HGDKGDGGDEDDSDNG 226
M+ +VA T V++ +V ++ GG G+G GSG +G GD ++DD +NG
Sbjct: 473 MVVIVAITMVVSTMVA---VMERGGGGGNGSRGDDGSGEWWRQRNGSSGD--NDDDINNG 309
Query: 227 SDSGALIRLR 236
GA LR
Sbjct: 308 GSGGAWWLLR 279
>CB829198
Length = 562
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/53 (30%), Positives = 26/53 (48%)
Frame = +2
Query: 85 CLPLLETKVVDGNLFVGASKNLKRTPKVHYHPIGHHHHRPPPPVTITINTTFI 137
C+P+ T +G + +GA++ R P P HHH PPP+ + F+
Sbjct: 14 CVPVHSTLAANG-IRIGANRPPPRVPP-ELRPQHHHHRHRPPPIRVRFRNRFV 166
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/54 (38%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Frame = -1
Query: 194 VVGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGAL----IRLRVIVRDKH 243
V G D GG GGG G G +G GG E +S+ G+ G L + L + D H
Sbjct: 201 VAGDDGISGGGRGGGGG-GFEGCGGGERESEAGAVVGELREAEVGLTAVADDGH 43
>AV409412
Length = 426
Score = 33.5 bits (75), Expect = 0.038
Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Frame = -2
Query: 193 VVVGGDSGDGGNNGGGSGHGDKGD--GGDEDDSDNGSDSG 230
VV GGD +GG GGG G++G GG+ D +G G
Sbjct: 416 VVEGGDDVEGGGGGGGEEGGEEGGGVGGEVADEVDGEGDG 297
Score = 30.0 bits (66), Expect = 0.42
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +2
Query: 100 VGASKNLKRTPKVHYHPIGHHHHRPPPPVTIT 131
+ SKN ++P H+H I HHHH P +T
Sbjct: 32 INLSKN--QSPPQHHHVIHHHHHHHPISGAVT 121
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSD 228
GG +GG GGG G G+ DE D + D
Sbjct: 380 GGGGEEGGEEGGGVG----GEVADEVDGEGDGD 294
>AV775527
Length = 466
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 193 VVVGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRLRVIVRDKHMYFAEQSIS 252
V VG ++G+GG GG G ++ + G ED+ + + + VI RD H + S
Sbjct: 179 VDVGVETGEGGGGGGREGRLEEDEEGTEDEEEGECNHAPIF---VIPRDTHAHHESFFFS 9
Query: 253 L 253
L
Sbjct: 8 L 6
>AV410227
Length = 428
Score = 33.1 bits (74), Expect = 0.050
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSG--------HGDKGDGGDEDDSDNGSDSG 230
G ++GDGG GGG G GD GD +E+ D G G
Sbjct: 269 GEEAGDGGEEGGGVGVGVVGEVERGDVGDVAEEEAVDGGGRGG 141
>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (43%)
Length = 1108
Score = 33.1 bits (74), Expect = 0.050
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 109 TPKVHYHPIGHHHHRPPPPVTITINTTFIAASTAIVVV---ATTNLRRFLF 156
+P H+H HHHH P P + +T + ++S + + + T+ +FLF
Sbjct: 2 SPTHHHHHHHHHHHHPSPLIPVTTFISVFSSSDSHYIYPIHSLTHFTQFLF 154
>TC13540 similar to PIR|C86255|C86255 protein F12F1.11 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(10%)
Length = 564
Score = 33.1 bits (74), Expect = 0.050
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 199 SGDGGNNGGGSGHGD--KGDGGDEDDSDNGS 227
SG GG GGG G GD +G GG EDD + GS
Sbjct: 92 SGSGGFGGGGGG-GDVVEGGGGVEDDEEKGS 181
>TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich
glycoprotein (HRGP) (Fragment), partial (8%)
Length = 417
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/49 (32%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Frame = +3
Query: 195 VGG--DSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRLRVIVRD 241
+GG D+ +GG+ GG G GD+G GG +D + + G L+ ++++
Sbjct: 279 IGGNDDNNNGGDGSGGGG-GDEGSGGGDDGDE---EFGPLLNFEAVMKE 413
>AW719782
Length = 428
Score = 32.7 bits (73), Expect = 0.065
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +3
Query: 202 GGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRLRVIVRDKHMYFAEQSISLQDI 256
GG GGGS G G GGD D ++G RD M AE SL+ +
Sbjct: 255 GGGGGGGSFGGHGGGGGDGDSGNDGK------------RDAIMVLAEAGRSLESV 383
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDED 221
GG GG+ GGG G GD G+ G D
Sbjct: 264 GGGGSFGGH-GGGGGDGDSGNDGKRD 338
>TC13025 similar to UP|Q9EMA1 (Q9EMA1) Envelope glycoprotein (Fragment),
partial (12%)
Length = 470
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = -2
Query: 110 PKVHYHPIGHHHHRPPPPVTITINTTFIAASTAIVVVATTNLRRF---LFHGLGVVTEAT 166
P H P HHHH+ PP T T TAI A T L RF L + V A
Sbjct: 235 PSSHPTPT*HHHHQRTPPTT---TAT*HNHCTAIAFQAYTALVRFTRGLASSMTAVAAAR 65
Query: 167 AVVTNMMLTV 176
A + LTV
Sbjct: 64 ASSAKVCLTV 35
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 32.0 bits (71), Expect = 0.11
Identities = 12/35 (34%), Positives = 21/35 (59%)
Frame = -3
Query: 202 GGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRLR 236
GG +GGG G G++G+G DE+ + + + +R
Sbjct: 217 GGGSGGGDGGGNEGEG*DEEGEEEEEEEAEAVVVR 113
>AW720491
Length = 509
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 194 VVGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGA---LIRLRVIVR 240
+V ++GDGG GGG G +G + DD D+ + + A LI L V VR
Sbjct: 412 MVREENGDGGAQGGGRGSEVEGFAKEADDVDHANLTDAYAILILLFVFVR 263
>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
protein, partial (57%)
Length = 1141
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSD 228
GG G+ GGG G+ G G DDS N D
Sbjct: 432 GGGGGEYSTGGGGGGYSTGGGGYGNDDSGNRRD 530
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,173,661
Number of Sequences: 28460
Number of extensions: 89040
Number of successful extensions: 2042
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of query: 262
length of database: 4,897,600
effective HSP length: 88
effective length of query: 174
effective length of database: 2,393,120
effective search space: 416402880
effective search space used: 416402880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0008.6