BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.11
(265 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI419302 227 2e-60
TC15370 weakly similar to UP|Q8S8R0 (Q8S8R0) Predicted protein, ... 127 1e-30
CB827165 112 6e-26
AV780762 50 5e-07
TC9378 similar to UP|Q8LDG6 (Q8LDG6) Protein kinase, partial (17%) 27 2.7
BP075702 27 3.6
AU251981 27 3.6
TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, ... 26 6.1
TC8142 UP|BAD11133 (BAD11133) Glutamate-rich protein, complete 26 6.1
TC14151 similar to UP|P93333 (P93333) PR10-1 protein (Class 10 P... 26 6.1
TC13489 similar to UP|Q8RP18 (Q8RP18) Transposase (Fragment), pa... 26 7.9
BP066300 26 7.9
TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-li... 26 7.9
TC15081 weakly similar to GB|AAH45981.1|28279210|BC045981 vacuol... 26 7.9
BP076582 26 7.9
>BI419302
Length = 539
Score = 227 bits (578), Expect = 2e-60
Identities = 107/107 (100%), Positives = 107/107 (100%)
Frame = +2
Query: 1 METDTTALSYWLNWRFSICALWIIFTMGLGSFLIWKYEEFNKSRDERGERQQQRAGLLYE 60
METDTTALSYWLNWRFSICALWIIFTMGLGSFLIWKYEEFNKSRDERGERQQQRAGLLYE
Sbjct: 218 METDTTALSYWLNWRFSICALWIIFTMGLGSFLIWKYEEFNKSRDERGERQQQRAGLLYE 397
Query: 61 DELWNTCLKRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYT 107
DELWNTCLKRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYT
Sbjct: 398 DELWNTCLKRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYT 538
>TC15370 weakly similar to UP|Q8S8R0 (Q8S8R0) Predicted protein, partial
(38%)
Length = 714
Score = 127 bits (320), Expect = 1e-30
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +3
Query: 187 GYIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNG 246
GYIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNG
Sbjct: 3 GYIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNG 182
Query: 247 M 247
M
Sbjct: 183 M 185
Score = 42.0 bits (97), Expect = 1e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +3
Query: 248 VKYLWLSRLFPGSCQVVS 265
VKYLWLSRLFPGSCQVVS
Sbjct: 387 VKYLWLSRLFPGSCQVVS 440
>CB827165
Length = 550
Score = 112 bits (280), Expect = 6e-26
Identities = 55/124 (44%), Positives = 75/124 (60%)
Frame = +1
Query: 105 FYTQWTFTLVTIYFGLASFFSIYGCFFKHDKFEGNTVGSACLNTERGTYVAPTIDGDTDI 164
F +WT T VTIYFGL S S++GC+ H K G+ V + + E+G + AP I ++
Sbjct: 175 F*NRWTLTSVTIYFGLGSLLSMHGCYQHHKKARGDKVDNVDGDAEKGMHNAPAIPPGSNA 354
Query: 165 PHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLG 224
K+ A ++ + AG WGYIFQI+FQ AGAV+LTD VFW ++ PFL KD+ L
Sbjct: 355 SDQEKNLKAPEKDPLRQLAGTWGYIFQIIFQINAGAVMLTDCVFWFIIVPFLTIKDYNLN 534
Query: 225 LFAV 228
F V
Sbjct: 535 FFIV 546
>AV780762
Length = 531
Score = 49.7 bits (117), Expect = 5e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -1
Query: 226 FAVCMHSVNAVFLLGETSLNGMV 248
FAVCMHSVNAVFLLGETSLNGMV
Sbjct: 417 FAVCMHSVNAVFLLGETSLNGMV 349
>TC9378 similar to UP|Q8LDG6 (Q8LDG6) Protein kinase, partial (17%)
Length = 654
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/31 (35%), Positives = 15/31 (47%)
Frame = +1
Query: 156 PTIDGDTDIPHMYKSTDAYQEPHTQNTAGAW 186
PT++GD D + K D P + T G W
Sbjct: 28 PTVNGDLDTQNFEKFPDVDGPPSSTTTVGPW 120
>BP075702
Length = 436
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -2
Query: 45 DERGERQQQRAGLLYEDELWNTCLKRIH 72
D ER+++ AGLL+ D LW+ K I+
Sbjct: 435 DSSRERKRRIAGLLHYDALWHRLRKEIN 352
>AU251981
Length = 292
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Frame = +2
Query: 85 IVLLGL---LIGNMVADGVGILYFYTQWTFTLVTIYFG 119
+V LGL ++ V G+L Y +WTFT+ I FG
Sbjct: 128 VVSLGLALLIVPRQVTPWTGLLLMY-EWTFTIFFILFG 238
>TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, partial
(57%)
Length = 1280
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = +3
Query: 89 GLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYGC 129
GLL G + DGV + + W++ L ++ + SI+GC
Sbjct: 960 GLL*GKISIDGVTFVIVFRDWSYRLAHLF---SCNDSIFGC 1073
>TC8142 UP|BAD11133 (BAD11133) Glutamate-rich protein, complete
Length = 999
Score = 26.2 bits (56), Expect = 6.1
Identities = 10/28 (35%), Positives = 14/28 (49%)
Frame = -1
Query: 8 LSYWLNWRFSICALWIIFTMGLGSFLIW 35
L +W NW F C ++ F G F +W
Sbjct: 342 LGFWSNWGFCFCFCFLWFFCG---FFLW 268
>TC14151 similar to UP|P93333 (P93333) PR10-1 protein (Class 10 PR protein),
complete
Length = 997
Score = 26.2 bits (56), Expect = 6.1
Identities = 31/94 (32%), Positives = 41/94 (42%)
Frame = +3
Query: 102 ILYFYTQWTFTLVTIYFGLASFFSIYGCFFKHDKFEGNTVGSACLNTERGTYVAPTIDGD 161
IL +T + L I F F SI G F D+ +TV A L Y A TIDGD
Sbjct: 21 ILSIHTSFILLLC*IKF---PFHSIMGVFTFQDETT-STVAPARL------YKALTIDGD 170
Query: 162 TDIPHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQ 195
+ IP K ++ G+ G I +I F+
Sbjct: 171 SIIP---KVLPGFKSVEIVKGNGSAGTIKKITFE 263
>TC13489 similar to UP|Q8RP18 (Q8RP18) Transposase (Fragment), partial (7%)
Length = 650
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Frame = -1
Query: 10 YWLNWRFSICALWIIFTMGLGSFLIWKYEEFNKSRDE-RGERQQQRAGLLYEDE-LWNTC 67
Y + RFS C L ++ + SF+ E +S+DE E +GLL E + LW +C
Sbjct: 305 YMVAIRFSFCVLLVLLLVAAVSFV-----EKKESQDEFVSELLDSTSGLLDEHKVLWISC 141
>BP066300
Length = 420
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
Frame = -3
Query: 106 YTQWTF----TLVTIYFGLASFF 124
YT+ TF T+ T+YF LASFF
Sbjct: 103 YTESTFSIELTIYTLYFHLASFF 35
>TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (12%)
Length = 588
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 194 FQTCAGAVVLTDLVFWLVLYPFL 216
F TC +++ TDL FW +Y L
Sbjct: 504 FPTCCYSLLKTDLEFWEAMYNLL 572
>TC15081 weakly similar to GB|AAH45981.1|28279210|BC045981 vacuolar protein
sorting 29 {Danio rerio;} , complete
Length = 1063
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 118 FGLASFFSIYGC--FFKHDKFEGNTV 141
+ L SFF ++GC FF F+G TV
Sbjct: 800 YSLLSFFFLFGCLVFFSLQTFQGCTV 877
>BP076582
Length = 418
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = -3
Query: 114 VTIYFGLASF--FSIYGCFF 131
VT+YFGL F F +Y CFF
Sbjct: 62 VTLYFGLGPFPIFYMYICFF 3
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.143 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,921,206
Number of Sequences: 28460
Number of extensions: 87355
Number of successful extensions: 647
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of query: 265
length of database: 4,897,600
effective HSP length: 89
effective length of query: 176
effective length of database: 2,364,660
effective search space: 416180160
effective search space used: 416180160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0008.11