BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.10
(155 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal prote... 316 1e-87
TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension ... 313 1e-86
TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 150 9e-38
AU089356 150 9e-38
CN824966 150 9e-38
TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 150 9e-38
TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 150 9e-38
TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (... 150 9e-38
TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 150 9e-38
TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 150 9e-38
TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 150 9e-38
AV410621 150 9e-38
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%) 150 9e-38
AV428412 150 9e-38
TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 134 9e-33
AV427711 131 6e-32
TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal... 130 1e-31
AV766129 122 3e-29
AV769937 100 1e-22
TC14061 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric po... 98 6e-22
>TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal protein S27a
fusion protein - white lupine {Lupinus
albus;}, complete
Length = 729
Score = 316 bits (810), Expect = 1e-87
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 82 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 261
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 262 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 441
Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 155
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA
Sbjct: 442 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 546
>TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension protein,
partial (97%)
Length = 644
Score = 313 bits (801), Expect = 1e-86
Identities = 153/155 (98%), Positives = 153/155 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 31 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 210
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 211 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 390
Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 155
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK A
Sbjct: 391 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPTA 495
>TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (70%)
Length = 868
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 306 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 485
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 486 IQKESTLHLVLRLRGG 533
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 78 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 257
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 258 IQKESTLHLVLRLRGG 305
Score = 81.3 bits (199), Expect(2) = 9e-33
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 534 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 653
Score = 73.9 bits (180), Expect(2) = 9e-33
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +1
Query: 41 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 655 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 762
Score = 70.1 bits (170), Expect = 2e-13
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 35
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG
Sbjct: 763 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 867
>AU089356
Length = 600
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 28 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 207
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 208 IQKESTLHLVLRLRGG 255
Score = 148 bits (373), Expect = 5e-37
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 256 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 435
Query: 61 IQKESTLHLVLRLRGG 76
I KESTLHLVLRLRGG
Sbjct: 436 IXKESTLHLVLRLRGG 483
Score = 50.8 bits (120), Expect(2) = 1e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29
MQIFVKTLTGKTITL VESSDTIDN + K
Sbjct: 484 MQIFVKTLTGKTITLXVESSDTIDNXEGK 570
Score = 29.6 bits (65), Expect(2) = 1e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 23 IDNVKAKIQDKEGIPP 38
+ +KAKIQDKEGIPP
Sbjct: 551 LTTLKAKIQDKEGIPP 598
>CN824966
Length = 600
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 16 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 195
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 196IQKESTLHLVLRLRGG 243
>TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (43%)
Length = 563
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 482
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 483 IQKESTLHLVLRLRGG 530
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 254
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 255 IQKESTLHLVLRLRGG 302
Score = 25.4 bits (54), Expect = 4.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 1 MQIFVKTLTGK 11
MQIFVKTLTGK
Sbjct: 531 MQIFVKTLTGK 563
>TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 502
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 215 IQKESTLHLVLRLRGG 262
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 66 TLHLVLRLRGG 76
TLHLVLRLRGG
Sbjct: 2 TLHLVLRLRGG 34
>TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (fragment)
{Helianthus annuus;} , partial (93%)
Length = 1380
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 274 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 453
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 454 IQKESTLHLVLRLRGG 501
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 46 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 225
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 226 IQKESTLHLVLRLRGG 273
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 730 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 909
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 910 IQKESTLHLVLRLRGG 957
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 958 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 1137
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 1138 IQKESTLHLVLRLRGG 1185
Score = 149 bits (375), Expect = 3e-37
Identities = 75/76 (98%), Positives = 76/76 (99%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR+LADYN
Sbjct: 502 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRSLADYN 681
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 682 IQKESTLHLVLRLRGG 729
>TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 567
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 330
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 331 IQKESTLHLVLRLRGG 378
Score = 120 bits (302), Expect = 8e-29
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 379 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 558
Query: 61 IQK 63
++
Sbjct: 559 SRR 567
Score = 102 bits (254), Expect = 3e-23
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = +1
Query: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 1 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
>TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (67%)
Length = 842
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 258
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 259 IQKESTLHLVLRLRGG 306
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 535 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 714
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 715 IQKESTLHLVLRLRGG 762
Score = 147 bits (372), Expect = 6e-37
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYN
Sbjct: 307 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYN 486
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 487 IQKESTLHLVLRLRGG 534
Score = 52.8 bits (125), Expect = 3e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNV 26
MQIFVKTLTGKTITLEVESSDTIDNV
Sbjct: 763 MQIFVKTLTGKTITLEVESSDTIDNV 840
>TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (37%)
Length = 574
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 184 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 363
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 364 IQKESTLHLVLRLRGG 411
Score = 121 bits (303), Expect = 6e-29
Identities = 60/61 (98%), Positives = 61/61 (99%)
Frame = +1
Query: 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75
EVESSDTIDNVKAKIQD+EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct: 1 EVESSDTIDNVKAKIQDQEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 180
Query: 76 G 76
G
Sbjct: 181G 183
>AV410621
Length = 292
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 45 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 224
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 225 IQKESTLHLVLRLRGG 272
>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
Length = 527
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 150 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 329
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 330 IQKESTLHLVLRLRGG 377
Score = 100 bits (249), Expect = 1e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +3
Query: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 3 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 149
>AV428412
Length = 426
Score = 150 bits (379), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 98 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 277
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 278 IQKESTLHLVLRLRGG 325
Score = 67.0 bits (162), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2
Query: 45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 2 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 97
Score = 65.9 bits (159), Expect = 3e-12
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK
Sbjct: 326 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 424
>TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (18%)
Length = 427
Score = 134 bits (336), Expect = 9e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = +2
Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL
Sbjct: 2 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 181
Query: 70 VLRLRGG 76
VLRLRGG
Sbjct: 182VLRLRGG 202
>AV427711
Length = 251
Score = 131 bits (329), Expect = 6e-32
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 52 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 231
Query: 61 IQKEST 66
IQKEST
Sbjct: 232 IQKEST 249
>TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal protein
L3 {Arabidopsis thaliana;} , partial (83%)
Length = 1408
Score = 130 bits (326), Expect = 1e-31
Identities = 65/66 (98%), Positives = 66/66 (99%)
Frame = +1
Query: 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
+TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct: 1 QTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 180
Query: 71 LRLRGG 76
LRLRGG
Sbjct: 181LRLRGG 198
Score = 57.0 bits (136), Expect = 1e-09
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30
MQIFVKTLTGKTITLEVESSDTIDNVKA +
Sbjct: 199 MQIFVKTLTGKTITLEVESSDTIDNVKATV 288
>AV766129
Length = 389
Score = 122 bits (306), Expect = 3e-29
Identities = 63/76 (82%), Positives = 68/76 (88%)
Frame = -3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVK LTGKTI L+VES D+IDNVKAKIQ KEGIPPDQQRLIF+GKQLE+GRTLAD+N
Sbjct: 363 MQIFVKPLTGKTIPLKVESFDSIDNVKAKIQAKEGIPPDQQRLIFSGKQLENGRTLADFN 184
Query: 61 IQKESTLHLVLRLRGG 76
IQKES LH VL L GG
Sbjct: 183 IQKESPLHFVL*LCGG 136
>AV769937
Length = 296
Score = 100 bits (249), Expect = 1e-22
Identities = 50/54 (92%), Positives = 51/54 (93%)
Frame = -2
Query: 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
IDNVKAKIQ KEGIPP QQRLIFAGKQL+DGR LADYNIQKESTLHLVLRLRGG
Sbjct: 295 IDNVKAKIQAKEGIPPHQQRLIFAGKQLKDGRPLADYNIQKESTLHLVLRLRGG 134
>TC14061 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric
polyubiquitin {Nicotiana sylvestris;} , partial (22%)
Length = 472
Score = 98.2 bits (243), Expect = 6e-22
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = +1
Query: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
KAKIQDKEGIPPDQ RLIFAGKQLEDGRT ADYNIQKESTLHLVLRLRGG
Sbjct: 1 KAKIQDKEGIPPDQXRLIFAGKQLEDGRTXADYNIQKESTLHLVLRLRGG 150
Score = 68.9 bits (167), Expect = 4e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 68
PPDQQRLIFAGKQLEDGRTLADYNIQKESTLH
Sbjct: 364 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 459
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,364,957
Number of Sequences: 28460
Number of extensions: 26548
Number of successful extensions: 236
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0008.10