BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.12
(1387 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 182 2e-46
BP055130 139 4e-33
BP054462 124 8e-29
BP046863 99 6e-21
BF177840 96 5e-20
AU089582 74 8e-19
BG662087 87 1e-17
AV426985 86 3e-17
AV410603 79 6e-15
AV410570 54 2e-07
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 50 2e-06
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 44 1e-04
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot... 37 0.021
TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precu... 37 0.021
BP037936 35 0.062
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 34 0.14
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 33 0.23
NP459444 rac GTPase activating protein 3 [Lotus japonicus] 32 0.52
TC18698 32 0.52
TC8542 similar to UP|RK1_PEA (P49208) 50S ribosomal protein L1, ... 32 0.68
>AV427422
Length = 417
Score = 182 bits (463), Expect = 2e-46
Identities = 83/138 (60%), Positives = 107/138 (77%)
Frame = +1
Query: 1123 TGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRD 1182
TGLP S G+ V+VDRLSK++HFV L +TA +A+ F E+ RLHG+P SIVSDRD
Sbjct: 4 TGLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRD 183
Query: 1183 KIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLH 1242
+F+S+FW++LF++ GTKL+ STAYHPE+DGQTEVVNR LETYLRCF +QP+SW ++
Sbjct: 184 PLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVP 363
Query: 1243 LAELWYNTSFHSAAGMTP 1260
AE WYNTS+H + G TP
Sbjct: 364 WAEYWYNTSYHVSTGQTP 417
>BP055130
Length = 567
Score = 139 bits (349), Expect = 4e-33
Identities = 64/115 (55%), Positives = 82/115 (70%)
Frame = +2
Query: 1127 PSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFL 1186
P G TV V+VDRLSKY HF AN+T++ +A F S I +LHG+PR+IVSDRDK F
Sbjct: 170 PVCGFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFT 349
Query: 1187 SHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFL 1241
S FW+ F+++GT L S++YHP+TDGQTE +N+ LE YLRCF E PR W +L
Sbjct: 350 SAFWKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
>BP054462
Length = 422
Score = 124 bits (312), Expect = 8e-29
Identities = 62/139 (44%), Positives = 96/139 (68%)
Frame = +1
Query: 1249 NTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQH 1308
N++++ +A M+PFQA+YGR PP LL S I ++++ R +L L+ANL ++Q
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1309 RMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAY 1368
M+ +K RR+V ++ V L+LQPYR+RSLA +++ KL+ R+YGP+ + +IG+VAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1369 ELDLPPTSKLHNVFHVSLL 1387
L+LP S++H VFHVSLL
Sbjct: 361 RLELPAHSRVHPVFHVSLL 417
>BP046863
Length = 580
Score = 98.6 bits (244), Expect = 6e-21
Identities = 47/107 (43%), Positives = 75/107 (69%)
Frame = +1
Query: 1281 AIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRS 1340
++++++ +++R +L L+ NL +AQ +M+ Q +K RR V ++ WV L+LQPY+ ++
Sbjct: 253 SVEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQN 432
Query: 1341 LAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
LA R + KL+ RFYGPF+V R+ VAY LDL S++H VFH+SLL
Sbjct: 433 LAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSESRVHPVFHLSLL 573
>BF177840
Length = 410
Score = 95.5 bits (236), Expect = 5e-20
Identities = 50/102 (49%), Positives = 61/102 (59%)
Frame = +2
Query: 1176 SIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPR 1235
SIVSDRD F+SHFWR L+ GTKL +ST HP+TDGQTEVVN+ L T LR +
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1236 SWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVP 1277
W +L E YN HS +PF+ VYG P + L +P
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLP 319
>AU089582
Length = 383
Score = 73.9 bits (180), Expect(2) = 8e-19
Identities = 36/72 (50%), Positives = 46/72 (63%)
Frame = +2
Query: 1156 ATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQT 1215
A+ A + EI LHG+P SI+SDR F SHFWR GT+L+ STA+HP+TDGQ+
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1216 EVVNRGLETYLR 1227
E + LE LR
Sbjct: 191 ERTIQILEDMLR 226
Score = 38.1 bits (87), Expect(2) = 8e-19
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 1236 SWYKFLHLAELWYNTSFHSAAGMTPFQAVYGR 1267
SW ++L L E YN S+ S+ M PF+A+YGR
Sbjct: 252 SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGR 347
>BG662087
Length = 373
Score = 87.4 bits (215), Expect = 1e-17
Identities = 44/119 (36%), Positives = 68/119 (56%)
Frame = +1
Query: 608 GTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHK 667
G WR VD+ LN KD +P+P+ID+L+D S +D SG+HQI++ D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 668 TAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAH 726
TAF T +Y + +PFGL NA +T+Q M+ + + R + V+ D+++V S + H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>AV426985
Length = 422
Score = 86.3 bits (212), Expect = 3e-17
Identities = 47/138 (34%), Positives = 77/138 (55%)
Frame = +1
Query: 258 IKRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVE 317
+K ++ A+MQ RR LC+ CDEK++ HKC + +++ + ++ + + ++ T+
Sbjct: 7 VKYISPAEMQLRREKNLCYWCDEKFSFNHKCPNKYLMMLQLTDENDSDDTSNQQVTTTIS 186
Query: 318 DVTVPVHEEAMHFQLSDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSF 377
D + PV + HF L+ A+ G T++FT + V VLVD GSS+ F+ P F
Sbjct: 187 DDS-PVEDH--HFSLN--AMRGFTGVGTIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKF 351
Query: 378 LHLKVTPIPTFPVMVGNG 395
L L + P F V+VGNG
Sbjct: 352 LQLPIESKPNFKVLVGNG 405
>AV410603
Length = 162
Score = 78.6 bits (192), Expect = 6e-15
Identities = 36/53 (67%), Positives = 42/53 (78%)
Frame = +1
Query: 623 TIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDG 675
T+KD FP+PT+DELLDEL G+ FSKLDLRSG+HQI + ED HKT FRT G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>AV410570
Length = 412
Score = 53.5 bits (127), Expect = 2e-07
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +2
Query: 248 PKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLL 295
PKPV KR++ A+MQ RR GLCF CDEKY+ HKC + +L
Sbjct: 50 PKPVPKLQPQAKRISPAEMQLRREKGLCFTCDEKYSWNHKCPNKQLML 193
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 50.4 bits (119), Expect = 2e-06
Identities = 25/41 (60%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Frame = +3
Query: 1348 KLAKRFYGPFRVKRRIGSVAYELDLPP-TSKLHNVFHVSLL 1387
KL+ RF GPF V R+GSV+Y L LPP S +H VFHVS+L
Sbjct: 48 KLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSML 170
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 44.3 bits (103), Expect = 1e-04
Identities = 27/82 (32%), Positives = 39/82 (46%)
Frame = +2
Query: 1185 FLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLA 1244
F S +D G ++RFS+ HP+T+GQTE N+ + ++ E W L +
Sbjct: 23 FTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIV 202
Query: 1245 ELWYNTSFHSAAGMTPFQAVYG 1266
YNT S+ TPF YG
Sbjct: 203 LWSYNTMPQSSIKETPF*LTYG 268
>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 577
Score = 37.0 bits (84), Expect = 0.021
Identities = 31/113 (27%), Positives = 43/113 (37%), Gaps = 1/113 (0%)
Frame = +3
Query: 442 KVISDFSIPSMSFVVNGK-TCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSP 500
K S+ I F N + T +++ +PP H S L I P+P
Sbjct: 3 KAFSNSQISFDGFQENHRSTISIQFNEVPPTFHFSPQSSPPLHRRRRSPI*AAINHTPNP 182
Query: 501 PSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHIN 553
P P P PPP +P L+ + TP+ P T FH HH+N
Sbjct: 183 PPPPLPPL--------PPPPPNPMT--LILTPLSTLLTPNSTPTTSFHHHHLN 311
>TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precursor (N-75)
(NGM-75), partial (49%)
Length = 803
Score = 37.0 bits (84), Expect = 0.021
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 498 PSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPN 557
P+ TP P F L + PP + P L++ P++ PH PP H L
Sbjct: 301 PTGHPTPYPPFYHLPPVYHPPYEKPPPLYQPPHEKPPIYEPPHEKPPIYEPPHEKPPLYE 480
Query: 558 TPP-VNVRPY-RYPHSQ 572
PP N PY YP S+
Sbjct: 481 PPPGYNPPPYGHYPPSK 531
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +1
Query: 500 PPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTP 559
PP+ P P PPP+++P + PV+S P+ PPT H + P
Sbjct: 202 PPAYPPPY-------EKPPPEYEPPQ----EKPPPVYSPPYERPPTG-HPTPYPPFYHLP 345
Query: 560 PVNVRPYRYP 569
PV PY P
Sbjct: 346 PVYHPPYEKP 375
Score = 28.1 bits (61), Expect = 9.9
Identities = 20/70 (28%), Positives = 25/70 (35%)
Frame = +1
Query: 500 PPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTP 559
PP PQ PPP + P W+ +Y P P+ PP + P
Sbjct: 136 PPEYEPPQ-------EKPPPVYLPPYWKPPPAYPP----PYEKPPPEYEPPQ----EKPP 270
Query: 560 PVNVRPYRYP 569
PV PY P
Sbjct: 271 PVYSPPYERP 300
>BP037936
Length = 518
Score = 35.4 bits (80), Expect = 0.062
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 221 PNQSHFTSPSTAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALG 273
P +S P I+ +P +A +QAPKPVA+ LP+ + + R +G
Sbjct: 383 PEESTHRHPGLVILMQEPTRVALHAQAPKPVAAHRLPVAPAPDGDVVDGRGVG 225
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 34.3 bits (77), Expect = 0.14
Identities = 24/72 (33%), Positives = 29/72 (39%), Gaps = 1/72 (1%)
Frame = +1
Query: 496 FLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLL 555
++P PP TPSP +S PP P S P TP P H
Sbjct: 217 YIPLPPKTPSP-------ISQPPHVPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHTPTP 375
Query: 556 PNTP-PVNVRPY 566
PNTP P++ PY
Sbjct: 376 PNTPSPISQPPY 411
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/83 (30%), Positives = 31/83 (37%)
Frame = +1
Query: 496 FLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLL 555
+ P+PP TPSP T + TP P P+ S P TP P HI
Sbjct: 313 YTPTPPKTPSP---TSQPPHTPTPPNTPS----PISQPPYTPTPPKTPSPTNQPPHIPSP 471
Query: 556 PNTPPVNVRPYRYPHSQKEAMAT 578
PN+ +P P K T
Sbjct: 472 PNSSSPTSQPPNTPSPPKTPSPT 540
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 33.5 bits (75), Expect = 0.23
Identities = 27/105 (25%), Positives = 37/105 (34%), Gaps = 3/105 (2%)
Frame = +3
Query: 467 PLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALW 526
P PPP H + + H SPP P + S+PPP
Sbjct: 264 PPPPPPHKPYKYPSPPPPPHKYPHPHPHPVYHSPPPPPPKKHY---KYSSPPPP------ 416
Query: 527 ELLQSYAPVFSTPHGLPP---TRFHDHHINLLPNTPPVNVRPYRY 568
+ +Y H PP T H H + P PP + +PY+Y
Sbjct: 417 --VHTYPHPHPVYHSPPPPVHTYPHPHPVYHSPPPPPPHEKPYKY 545
Score = 30.0 bits (66), Expect = 2.6
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = +3
Query: 499 SPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGL----PPTRFHDHHINL 554
SPP P P S PPP P P + PH + PP H +
Sbjct: 120 SPPPPPKPYSYH----SPPPPVHSPP---------PPYEKPHPVYHSPPPPYEKPHPVYH 260
Query: 555 LPNTPPVNVRPYRYP 569
P PP + +PY+YP
Sbjct: 261 SPPPPPPH-KPYKYP 302
>NP459444 rac GTPase activating protein 3 [Lotus japonicus]
Length = 1300
Score = 32.3 bits (72), Expect = 0.52
Identities = 27/85 (31%), Positives = 46/85 (53%), Gaps = 6/85 (7%)
Frame = +2
Query: 156 EKVSNQVVGLSPEAVLDC-----FISGLVPEIK-RELAILKPYSVSQAIGIAKQIEAKIK 209
E S + GLSPE VL+C F+ LV ++K ELA+L +++ + ++ E
Sbjct: 497 ELPSGVLDGLSPEQVLECNTEEEFVQ-LVKQLKPTELALLN-WALDLMADVVEEEEHNKM 670
Query: 210 ESRSSQQRVFRPNQSHFTSPSTAIV 234
++R+ VF PN + + P TA++
Sbjct: 671 DARNIAM-VFAPNMTQMSDPLTALM 742
>TC18698
Length = 808
Score = 32.3 bits (72), Expect = 0.52
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -2
Query: 667 KTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYS 720
KT + +Y + VMP GL N +T+Q M+ + + + V V+ +D++V S
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKS 640
>TC8542 similar to UP|RK1_PEA (P49208) 50S ribosomal protein L1,
chloroplast precursor (Fragment), partial (53%)
Length = 672
Score = 32.0 bits (71), Expect = 0.68
Identities = 22/65 (33%), Positives = 29/65 (43%), Gaps = 5/65 (7%)
Frame = +1
Query: 459 KTCTLEGEPLPPPSHASFNH-----FQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLEN 513
KT L P PPPS + F L+ T + + T LPSPP + SP+ T
Sbjct: 103 KTSLLLSVPEPPPSPSPEPSLFTLSFSSLLPTPSTSPPPTSGLLPSPPRSRSPKPSTTRR 282
Query: 514 LSTPP 518
+ PP
Sbjct: 283 MMGPP 297
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,414,858
Number of Sequences: 28460
Number of extensions: 461184
Number of successful extensions: 3453
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 3102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3407
length of query: 1387
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1285
effective length of database: 1,994,680
effective search space: 2563163800
effective search space used: 2563163800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0007.12