BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.11
(264 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding p... 539 e-154
TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b bindi... 508 e-145
TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding ... 417 e-118
TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 358 e-100
AV422060 253 2e-68
AV428776 169 5e-43
TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b bind... 163 2e-41
BP048304 145 7e-36
TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein,... 137 2e-33
TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b b... 136 3e-33
BP036028 135 6e-33
TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding prot... 134 2e-32
AV773542 75 3e-29
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro... 119 7e-28
TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding ... 113 3e-26
CN825719 106 5e-24
AV774181 98 1e-21
BP034985 97 4e-21
TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding... 94 3e-20
AV779517 88 2e-18
>TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding protein
precursor, partial (97%)
Length = 2581
Score = 539 bits (1388), Expect = e-154
Identities = 264/264 (100%), Positives = 264/264 (100%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF 60
MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF
Sbjct: 400 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF 579
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN
Sbjct: 580 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 759
Query: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 180
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL
Sbjct: 760 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 939
Query: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 940 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 1119
Query: 241 LADHLSDPVNNNAWAYATNFVPGK 264
LADHLSDPVNNNAWAYATNFVPGK
Sbjct: 1120LADHLSDPVNNNAWAYATNFVPGK 1191
Score = 221 bits (562), Expect = 1e-58
Identities = 130/268 (48%), Positives = 162/268 (59%), Gaps = 22/268 (8%)
Frame = +1
Query: 7 ALSSPSLAGQALNL--------SPSS----QEVGRFSMRKAATTKKVVSSG------SPW 48
+L + G A+N SPSS + V FS +K A +K V+ + W
Sbjct: 1528 SLGMSEMLGNAINFGGATRSAPSPSSPATFKTVALFSKKKPAPKQKPVAVAPADEELAKW 1707
Query: 49 YGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
YGPDR +L E P YLTGE PGDYG+D GL PE FAK + E+IH+RWAM
Sbjct: 1708 YGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAM 1887
Query: 106 LGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 164
LGA G + PE L + G G EAVWFK G+ + L+Y G P ++ ++A+ A +V
Sbjct: 1888 LGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINL--VVAVVA-EV 2058
Query: 165 ILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 224
+L+G E YRI G + D L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFSM
Sbjct: 2059 VLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSML 2232
Query: 225 GFFVQAIVTGKGPLENLADHLSDPVNNN 252
GFF+QA VTG GP+ENLA HLSDP NN
Sbjct: 2233 GFFIQAYVTGDGPVENLAKHLSDPFGNN 2316
>TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b binding protein
3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP),
partial (97%)
Length = 1058
Score = 508 bits (1308), Expect = e-145
Identities = 246/264 (93%), Positives = 253/264 (95%)
Frame = +2
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF 60
MA STMA+SSPSLAGQA+ L+PS Q+ GR +MRK T K VSSGSPWYGPDRVKYLGPF
Sbjct: 59 MATSTMAVSSPSLAGQAIKLAPSIQDTGRITMRKTTTKSKPVSSGSPWYGPDRVKYLGPF 238
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN
Sbjct: 239 SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 418
Query: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 180
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL
Sbjct: 419 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 598
Query: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 599 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 778
Query: 241 LADHLSDPVNNNAWAYATNFVPGK 264
LADHL+DPVNNNAWA+ATNFVPGK
Sbjct: 779 LADHLADPVNNNAWAFATNFVPGK 850
>TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II, complete
Length = 1116
Score = 417 bits (1072), Expect = e-118
Identities = 196/237 (82%), Positives = 216/237 (90%)
Frame = +2
Query: 28 GRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
GRF+MR+ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 155 GRFTMRRTVKS----APQSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADP 322
Query: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
ETFAKNRELEVIHSRWAMLGALGC FPE+L RNGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 323 ETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGN 502
Query: 148 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 207
P+L+HAQSILAIWATQV+LMG +EGYR+ GGPLGE DPLYPGG+FDPLGLADDP+AFAE
Sbjct: 503 PNLIHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAE 682
Query: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 264
LKVKELKNGRLAMFSMFGFFVQAIVTGKGP++NL DH++DPV NNAWA+ATNFVPG+
Sbjct: 683 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 853
>TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1178
Score = 358 bits (918), Expect = e-100
Identities = 189/273 (69%), Positives = 209/273 (76%), Gaps = 10/273 (3%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSP--------WYGPD 52
MAA+ MA ++ S +G + SP +G+ + T + VVS G+ WYGPD
Sbjct: 166 MAATLMAATTAS-SGTVIKPSPF---LGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPD 333
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 112
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+
Sbjct: 334 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI 513
Query: 113 FPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE 171
PE+L + V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VE
Sbjct: 514 TPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVE 693
Query: 172 GYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 230
G+RI G P + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 694 GFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQA 873
Query: 231 IVTGKGPLENLADHLSDPVNNNAWAYATNFVPG 263
IVTGKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 874 IVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 972
>AV422060
Length = 463
Score = 253 bits (647), Expect = 2e-68
Identities = 121/138 (87%), Positives = 127/138 (91%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF 60
MAASTMALSSPS+AG+A+ LSPS+Q+ GR +MRK K VSSGSPWYGPDRVKYLGPF
Sbjct: 49 MAASTMALSSPSVAGKAIKLSPSTQDSGRITMRKTGAKSKPVSSGSPWYGPDRVKYLGPF 228
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN
Sbjct: 229 SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 408
Query: 121 GVKFGEAVWFKAGSQIFS 138
GVKFGEAVWFK GSQIFS
Sbjct: 409 GVKFGEAVWFKVGSQIFS 462
>AV428776
Length = 331
Score = 169 bits (428), Expect = 5e-43
Identities = 85/98 (86%), Positives = 85/98 (86%)
Frame = +3
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF 60
MAASTMALSSPSLAGQALNLSPSSQE GR SMR AATTKK S SPWYGPDRVKYLGPF
Sbjct: 36 MAASTMALSSPSLAGQALNLSPSSQEDGRISMRNAATTKKGGSYRSPWYGPDRVKYLGPF 215
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 98
SGEPP Y TGE P DY WDTAGLSADPETFA NRELEV
Sbjct: 216 SGEPPFY*TGEIPSDYSWDTAGLSADPETFANNRELEV 329
>TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b binding protein
13, chloroplast precursor (LHCII type III CAB-13),
partial (43%)
Length = 615
Score = 163 bits (413), Expect = 2e-41
Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Frame = +3
Query: 152 HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKV 210
HAQSILA+ A V+LMG VEG+RI G P + LYPGG FDPLGLADDP FAELKV
Sbjct: 3 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 182
Query: 211 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPG 263
KE+KNGRLAMFSMFGFFVQAIVTGKGPLENL D L DPV N+AW YAT FVPG
Sbjct: 183 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDPLDDPVANHAWVYATQFVPG 341
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 72 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 121
+PG +D GL+ DP TFA+ + E+ + R AM G ++ G
Sbjct: 111 YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 260
>BP048304
Length = 398
Score = 145 bits (366), Expect = 7e-36
Identities = 71/83 (85%), Positives = 76/83 (91%)
Frame = -3
Query: 182 EVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
EVTDPLYPGGSFDPLG ADDPEAFAEL VK L+NGRLA+FSMFGFFVQAIVT KGPLE+L
Sbjct: 396 EVTDPLYPGGSFDPLGPADDPEAFAEL*VKGLQNGRLALFSMFGFFVQAIVTRKGPLEDL 217
Query: 242 ADHLSDPVNNNAWAYATNFVPGK 264
ADHLSDPV +AWAYA +FVPGK
Sbjct: 216 ADHLSDPVYYHAWAYAPHFVPGK 148
>TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein, complete
Length = 1268
Score = 137 bits (344), Expect = 2e-33
Identities = 101/277 (36%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPF 60
+++S++A S+ + A Q+L +G S RK + K S+ G +R +
Sbjct: 235 VSSSSLAFSAEA-AKQSLGARSLQSPIG--SSRKGSFIVKAASTPPVKQGANRPLWFA-- 399
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 114
S + SYL G PGD+G+D GLS DPE F + + L E+I+ R+AMLGA G + P
Sbjct: 400 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAP 576
Query: 115 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG 172
E+L + G+ E WF+ G I G Y + ++ ++ LMG E
Sbjct: 577 EILGKAGLIPEETALPWFQTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEH 729
Query: 173 YRIAGGP----------------LGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKELKN 215
R LG DP YPGG F +PLG D ++ ELK+KE+KN
Sbjct: 730 RRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKN 909
Query: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
GRLAM ++ G+F+Q +VTG GP +NL DHL+DPVNNN
Sbjct: 910 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 1020
>TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b binding
protein from photosystem I precursor, partial (98%)
Length = 1199
Score = 136 bits (343), Expect = 3e-33
Identities = 97/272 (35%), Positives = 137/272 (49%), Gaps = 15/272 (5%)
Frame = +3
Query: 2 AASTMALSSPS-------LAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRV 54
A +T+A+S+PS L LS +V F+ A + V + + PDR
Sbjct: 102 AIATLAISTPSSQKNGSPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAE---PDRP 272
Query: 55 KYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 113
+ F G PP +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 273 LW---FPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFI 443
Query: 114 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----TQVILMG 168
PE L + G+ W+ AG Q + + +L + I WA ++ G
Sbjct: 444 PEFLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILKPG 602
Query: 169 AVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGF 226
+V I TD YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G
Sbjct: 603 SVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGA 782
Query: 227 FVQAIVTGKGPLENLADHLSDPVNNNAWAYAT 258
+ Q I TG GP++NL HL+DP + +A T
Sbjct: 783 WFQHIYTGTGPIDNLFAHLADPGHATVFAAFT 878
>BP036028
Length = 483
Score = 135 bits (341), Expect = 6e-33
Identities = 59/72 (81%), Positives = 64/72 (87%)
Frame = +1
Query: 48 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 107
WYGPDRVKYLGPFS + PSYLTGEFP DYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 262 WYGPDRVKYLGPFSAQTPSYLTGEFPXDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 441
Query: 108 ALGCVFPELLAR 119
ALGC+ PE+L +
Sbjct: 442 ALGCITPEVLEK 477
Score = 33.1 bits (74), Expect = 0.050
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 6/54 (11%)
Frame = +1
Query: 178 GPLGEVTDPLYPGGSF------DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
GP T P Y G F D GL+ DPEAFA + E+ +GR AM G
Sbjct: 292 GPFSAQT-PSYLTGEFPXDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 450
>TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding protein type I
precursor (cab-6A) - tomato {Lycopersicon
esculentum;}, partial (97%)
Length = 979
Score = 134 bits (336), Expect = 2e-32
Identities = 86/197 (43%), Positives = 108/197 (54%), Gaps = 6/197 (3%)
Frame = +1
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 193 GQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 363
Query: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 179
G W KA GG YLGNP V ++ + A + + + VE R
Sbjct: 364 ----GLGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTVLAIEFLAISFVEHQR----- 510
Query: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 511 -SMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 687
Query: 236 GPLENLADHLSDPVNNN 252
GPLENLA HL+DP +NN
Sbjct: 688 GPLENLATHLADPWHNN 738
>AV773542
Length = 434
Score = 74.7 bits (182), Expect(3) = 3e-29
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = -3
Query: 202 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 244
P+AFAELKVKEL +GRLAMFS+FGFFVQA+VTG+GP++NL DH
Sbjct: 342 PDAFAELKVKEL*SGRLAMFSLFGFFVQALVTGQGPIQNLYDH 214
Score = 57.8 bits (138), Expect(3) = 3e-29
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -2
Query: 172 GYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 202
GYR+ GGPL E DPLYPGG+FDPL LADDP
Sbjct: 433 GYRLGGGPLAEGLDPLYPGGAFDPLALADDP 341
Score = 32.0 bits (71), Expect(3) = 3e-29
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -1
Query: 245 LSDPVNNNAWAYATNFVPG 263
+SDPV ++AWA+A +FVPG
Sbjct: 212 VSDPVAHHAWAFAPHFVPG 156
>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
complete
Length = 1116
Score = 119 bits (297), Expect = 7e-28
Identities = 107/300 (35%), Positives = 134/300 (44%), Gaps = 51/300 (17%)
Frame = +1
Query: 2 AASTMALSSPSLAGQALNLSPSSQEV-GRFSM---RKAATTKKVVSSGSPWYGPDRVKYL 57
A +T A +S + + + PS V RF +K A KKV G P + L
Sbjct: 61 ATATAAATSSFIGTRLRDAQPSLGRVQARFGFGIGKKKAAPKKVARPG-----PGTERPL 225
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN------------- 93
+ P +L G GDYG+D GL E AKN
Sbjct: 226 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFE 405
Query: 94 -------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 134
RE E+IH RWAML LG + E L G+ W AG
Sbjct: 406 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGK 564
Query: 135 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---LYPGG 191
EG YLG P SI A+ +V+++G +E R A DP LYPGG
Sbjct: 565 VELVEGS-SYLGLPLPF---SITALIWIEVLVIGYIEFQRNAE------LDPEKRLYPGG 714
Query: 192 SF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 250
SF DPLGLA DPE A L++ E+K+ RLAM + GF VQA TGKGPL+N A HLSDP++
Sbjct: 715 SFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLDNWATHLSDPLH 894
>TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding protein
(cab-11), complete
Length = 1025
Score = 113 bits (283), Expect = 3e-26
Identities = 76/191 (39%), Positives = 100/191 (51%), Gaps = 4/191 (2%)
Frame = +2
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D L+ DPE + E+++ RWAMLG G + PE+L G+
Sbjct: 236 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTNIGL-I 412
Query: 125 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGPL 180
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 413 NVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 586
Query: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
EV YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP +N
Sbjct: 587 NEVG---YPGGIFNPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDN 745
Query: 241 LADHLSDPVNN 251
L HLSDP +N
Sbjct: 746 LLQHLSDPWHN 778
>CN825719
Length = 679
Score = 106 bits (264), Expect = 5e-24
Identities = 66/176 (37%), Positives = 92/176 (51%), Gaps = 7/176 (3%)
Frame = +2
Query: 19 NLSPSSQEVGRFSMRKAATTKKVVSSG---SPWYGPDRVKYLGPFSGEP-PSYLTGEFPG 74
+L + +E +F++ ++ + S WYG +R ++LGP S PSYLTGE PG
Sbjct: 128 SLRRNMEEKKKFALENSSKFNALADQAQKESFWYGENRPRWLGPISSYVYPSYLTGELPG 307
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 133
DYG+D AG + DP K E++H+RWAML +LG + PELL G F E VW++ G
Sbjct: 308 DYGFDIAGFAKDPVALHKYFNFEILHARWAMLASLGALIPELLDLFGAFHFVEPVWWRVG 487
Query: 134 SQIFSEGGLDYLG--NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPL 187
LDYLG L +Q ++ I Q +LM E R G E +PL
Sbjct: 488 YSKLKGDTLDYLGIQGLHLAGSQGVVVIAICQALLMVGPEYARYCG---SEALEPL 646
>AV774181
Length = 441
Score = 98.2 bits (243), Expect = 1e-21
Identities = 48/54 (88%), Positives = 49/54 (89%)
Frame = -3
Query: 186 PLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
P PGGSFDPL LADDPEAFAELKVK LKNGRLAMFS+FGFFV AIVTGKGPLE
Sbjct: 430 PSTPGGSFDPLALADDPEAFAELKVKGLKNGRLAMFSIFGFFVPAIVTGKGPLE 269
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = -2
Query: 183 VTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL-ENL 241
VTDPLYP PLG P F + + ++ + KG + L
Sbjct: 440 VTDPLYPRWQL*PLGPC**PRGFC*A*SEGTQEWKVGHVLYLWILCSSYCDRKGAFGDTL 261
Query: 242 ADHLSDPV-NNNAWAYATN 259
D L P +AWAYAT+
Sbjct: 260 HDTLF*PTFTYHAWAYATH 204
>BP034985
Length = 561
Score = 96.7 bits (239), Expect = 4e-21
Identities = 45/63 (71%), Positives = 50/63 (78%)
Frame = -3
Query: 28 GRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
GRF+MR+ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 178 GRFTMRRTVKS----APQSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADP 11
Query: 88 ETF 90
ETF
Sbjct: 10 ETF 2
>TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein
CP29.3, chloroplast precursor (LHCII protein 4.3)
(LHCB4.3), partial (80%)
Length = 1155
Score = 93.6 bits (231), Expect = 3e-20
Identities = 68/153 (44%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Frame = +3
Query: 94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 153
RE EVIH RWAMLGALG + E L GV W AG +G YLG P
Sbjct: 534 RECEVIHGRWAMLGALGALSVEALT--GV-----AWQDAGKVELVDGS-SYLGLPLPFSI 689
Query: 154 QSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELK 209
+++ I +V+++G +E R A DP LYPGG F DPLGLA+DPE L+
Sbjct: 690 TTLIWI---EVLVIGYIEFQRNAE------LDPEKRLYPGGKFFDPLGLANDPEEKERLQ 842
Query: 210 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
+ E+K+ RLAM F +QA VTGKGP+ LA
Sbjct: 843 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 941
Score = 28.9 bits (63), Expect = 0.95
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 72 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 106
+PG +D GL+ DPE + + E+ HSR AM+
Sbjct: 774 YPGGKFFDPLGLANDPEEKERLQLAEIKHSRLAMV 878
>AV779517
Length = 514
Score = 87.8 bits (216), Expect = 2e-18
Identities = 50/84 (59%), Positives = 58/84 (68%)
Frame = -3
Query: 165 ILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 224
+L+G E YRI G LG D L+ GG FDP GLA DP+ A LKVK ++N RLAMFSM
Sbjct: 461 VLLGGAEYYRITYG-LG-FEDQLHSGGPFDPCGLAKDPDPAALLKVKGIQNRRLAMFSMP 288
Query: 225 GFFVQAIVTGKGPLENLADHLSDP 248
G F+ A VTG GP+ENLA HL DP
Sbjct: 287 GCFIPA*VTGDGPVENLALHLRDP 216
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,178,364
Number of Sequences: 28460
Number of extensions: 52069
Number of successful extensions: 303
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of query: 264
length of database: 4,897,600
effective HSP length: 88
effective length of query: 176
effective length of database: 2,393,120
effective search space: 421189120
effective search space used: 421189120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0007.11