BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.1
(254 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15379 UP|Q9ZPL8 (Q9ZPL8) Protein phosphatase type 2C, complete 297 1e-81
TC14449 similar to UP|O24078 (O24078) Protein phosphatase 2C, pa... 128 4e-32
TC18868 similar to UP|O49449 (O49449) Protein phosphatase 2C-lik... 127 2e-30
TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase t... 120 2e-28
BP054371 113 3e-26
TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , p... 109 4e-25
TC19939 similar to UP|Q9ZPL8 (Q9ZPL8) Protein phosphatase type 2... 107 3e-24
TC20055 105 1e-23
TC11813 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-lik... 93 4e-20
TC10673 homologue to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, ... 82 1e-16
TC8948 similar to UP|Q8VZD9 (Q8VZD9) AT5g53140/MFH8_8, partial (... 76 5e-15
TC9697 similar to GB|AAM63159.1|21554078|AY085949 protein phosph... 69 8e-13
TC17915 similar to GB|AAM10415.1|20147411|AY093799 AT3g05640/F18... 67 4e-12
CN825589 66 5e-12
AV424435 62 7e-11
TC18443 similar to GB|AAM10409.1|20147399|AY093793 At2g20630/F23... 62 1e-10
TC11286 homologue to GB|AAO63448.1|28951049|BT005384 At4g03415 {... 60 3e-10
BP068246 57 2e-09
TC14935 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-lik... 54 2e-08
TC14934 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-lik... 53 4e-08
>TC15379 UP|Q9ZPL8 (Q9ZPL8) Protein phosphatase type 2C, complete
Length = 1338
Score = 297 bits (760), Expect = 1e-81
Identities = 148/251 (58%), Positives = 190/251 (74%), Gaps = 1/251 (0%)
Frame = +1
Query: 4 ARHFSHGCYLIQGMMAHGMEDYVFAKHKKLNGYELGLYAIFDGHAGRDVAKYLQSHLFEN 63
+++ +HG +L++G H MEDYV A+ K ++ ELGL+AIFDGH+G +V YLQS+LF+N
Sbjct: 310 SKNITHGYHLVKGRSDHAMEDYVVAQFKTVDNNELGLFAIFDGHSGHNVPDYLQSNLFDN 489
Query: 64 ILNEPDFWKNPVHAVKKACKATDEEILENIAD-SRGGSTAVAAILINGVKLLVFNVGDSR 122
IL EPDFW PV AVKKA TD ILE + RGGSTAV AILIN KL+V N+GDSR
Sbjct: 490 ILKEPDFWTKPVEAVKKAYVDTDSTILEKSGELGRGGSTAVTAILINCQKLVVANLGDSR 669
Query: 123 AISCKNGVAKQLTEDHEPEKERDLVESRGGFVLNRPGSVPRVDGILAMTRAFGDGNLKDH 182
A+ CKNG A L+ DHEP E + + +RGGFV N PG VPRVDG LA++RAFGD +LK H
Sbjct: 670 AVLCKNGEAIPLSVDHEPATESEDIRNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKKH 849
Query: 183 ITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIEDAKNAAKKLVKEAKSQG 242
+++EP V + ID+D EFIILASDGLWKVM+NQEA D I++++DA++AAK L +EA +
Sbjct: 850 LSSEPHVTVELIDDDAEFIILASDGLWKVMSNQEAVDAIRNVKDARSAAKNLTEEALKRN 1029
Query: 243 SYDDISCIVVK 253
S DDISC+VV+
Sbjct: 1030SSDDISCVVVR 1062
>TC14449 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (63%)
Length = 1000
Score = 128 bits (321), Expect(2) = 4e-32
Identities = 80/185 (43%), Positives = 113/185 (60%), Gaps = 8/185 (4%)
Frame = +3
Query: 77 AVKKACKATDEEILENIADSRGGSTAVAAILINGVKLLVFNVGDSRAISCKNGVAKQLTE 136
AVK+ TD + L+ D GGS V A++ NG L+V N GD RA+ + GVA+ LT
Sbjct: 165 AVKRGYLNTDSDFLKE--DLHGGSCCVTALIRNG-NLVVSNAGDCRAVISRGGVAEALTT 335
Query: 137 DHEP--EKERDLVESRGGFVLNRPGSVPRVDGILAMTRAFGDGNLKDHITAEPDVMIRKI 194
DH P E ER+ +E+ GG+V G V R+ G LA++R+ GD +LK +TAEP+ + KI
Sbjct: 336 DHRPSREDERERIETLGGYVDLCRG-VWRIQGSLAVSRSIGDRHLKQWVTAEPETKVIKI 512
Query: 195 DEDTEFIILASDGLWKVMANQEACDCIKDIEDAKN------AAKKLVKEAKSQGSYDDIS 248
+ + + +ILASDGLW ++NQEA D + + N A KKLV A S+GS DD S
Sbjct: 513 EPEHDLLILASDGLWDKVSNQEAVDLARPLCVGNNKPQSLLACKKLVDLACSRGSMDDTS 692
Query: 249 CIVVK 253
+++K
Sbjct: 693 VMLIK 707
Score = 25.8 bits (55), Expect(2) = 4e-32
Identities = 9/26 (34%), Positives = 16/26 (60%)
Frame = +2
Query: 37 ELGLYAIFDGHAGRDVAKYLQSHLFE 62
+L + +FDGH G A++ ++L E
Sbjct: 41 KLAFFGVFDGHGGAKAAEFAANNLEE 118
>TC18868 similar to UP|O49449 (O49449) Protein phosphatase 2C-like protein,
partial (43%)
Length = 455
Score = 127 bits (318), Expect = 2e-30
Identities = 64/115 (55%), Positives = 84/115 (72%), Gaps = 1/115 (0%)
Frame = +2
Query: 4 ARHFSHGCYLIQGMMAHGMEDYVFAKHKKLNGYELGLYAIFDGHAGRDVAKYLQSHLFEN 63
++H +HG +L++G AH MEDY+ ++ KK ELGL+AIFDGH G DVA YLQ+HLF+N
Sbjct: 110 SKHITHGFHLMKGKSAHPMEDYLVSEFKKDKDKELGLFAIFDGHLGHDVASYLQNHLFQN 289
Query: 64 ILNEPDFWKNPVHAVKKACKATDEEILE-NIADSRGGSTAVAAILINGVKLLVFN 117
IL + DFW AVK+A TDE+ILE ++ RGGSTAV AILI+G KL++ N
Sbjct: 290 ILKQNDFWTETEIAVKRAYLETDEKILEQSLVLGRGGSTAVTAILIDGQKLVIAN 454
>TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase type 2C,
complete
Length = 1325
Score = 120 bits (302), Expect = 2e-28
Identities = 79/234 (33%), Positives = 127/234 (53%), Gaps = 21/234 (8%)
Frame = +3
Query: 41 YAIFDGHAGRDVAKYLQSHLFENILNEPDFWKNPVHAVK-----KAC-KATDEEILENIA 94
+A+FDGH G VA+ + L+ + E + N V V + C + D E+ N A
Sbjct: 483 FAVFDGHGGAQVAEACRERLYRLVAEEVERCGNGVEEVDWEEVMEGCFRNMDGEVAGNAA 662
Query: 95 DSRGGSTAVAAILINGVKLLVFNVGDSRAISCKNGVAKQLTEDHEPEKERDL--VESRGG 152
GSTAV A+ + ++++ N GD RA+ + G A L+ DH+P++ +L +E GG
Sbjct: 663 LRTVGSTAVVAV-VAAAEVVIANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGG 839
Query: 153 FVLNRPGSVPRVDGILAMTRAFGDGNLKDHITAEPDVMIRKIDEDTEFIILASDGLWKVM 212
V+N G RV G+LA +R+ GD L+ ++ ++P+V + K EF+ILASDGLW V+
Sbjct: 840 KVINWNGQ--RVLGVLATSRSIGDQYLRPYVISKPEVTVTKRSSKDEFLILASDGLWDVI 1013
Query: 213 ANQEACD-------------CIKDIEDAKNAAKKLVKEAKSQGSYDDISCIVVK 253
+++ AC C ++ A AA L + A ++GS D+ S IV++
Sbjct: 1014SSEMACQVVRKCLNGQIRRICNENQSRASEAATLLAEIALAKGSRDNTSVIVIE 1175
>BP054371
Length = 567
Score = 113 bits (283), Expect = 3e-26
Identities = 56/92 (60%), Positives = 70/92 (75%)
Frame = -2
Query: 163 RVDGILAMTRAFGDGNLKDHITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIK 222
RV+G LA++RAFGD NLK H+ ++PD+ +ID DTEF+ILASDGLWKVMAN EA D K
Sbjct: 563 RVNGQLAVSRAFGDQNLKSHLRSDPDIRHDEIDSDTEFLILASDGLWKVMANPEAVDIAK 384
Query: 223 DIEDAKNAAKKLVKEAKSQGSYDDISCIVVKF 254
I+D AAK L EA ++ S DDISC+VV+F
Sbjct: 383 KIQDPPKAAKPLTAEALNRESKDDISCLVVRF 288
>TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial
(89%)
Length = 1672
Score = 109 bits (273), Expect = 4e-25
Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 22/236 (9%)
Frame = +3
Query: 41 YAIFDGHAGRDVAKYLQSHL----FENI----LNEPD--FWKNPVHAVKKACKATDEEIL 90
Y +FDGH G + A Y++ ++ FE++ +E D F + ++++KA D +
Sbjct: 615 YGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVDKVFLQEVENSLRKAFLLADSALA 794
Query: 91 ENIADSRGGSTAVAAILINGVKLLVFNVGDSRAISCKNGVAKQLTEDHEP--EKERDLVE 148
++ + + T I G L+V N GD RA+ + G A ++EDH P ER VE
Sbjct: 795 DDCSVNTSSGTTALTAFIFGRLLMVANAGDCRAVLSRKGEAIDMSEDHRPIYPSERRRVE 974
Query: 149 SRGGFVLNRPGSVPRVDGILAMTRAFGDGNLK------DHITAEPDVMIRKIDEDTEFII 202
GG++ + ++G+L++TRA GD ++K + AEP+ + ED EF+I
Sbjct: 975 DLGGYIEDG-----YLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQMVLTEDDEFLI 1139
Query: 203 LASDGLWKVMANQEACDCIKD----IEDAKNAAKKLVKEAKSQGSYDDISCIVVKF 254
+ DG+W VM++Q A ++ +D + A+ LV EA ++D+++ I+V F
Sbjct: 1140IGCDGIWDVMSSQHAVSLVRKGLRRHDDPERCARDLVMEALRLNTFDNLTVIIVCF 1307
>TC19939 similar to UP|Q9ZPL8 (Q9ZPL8) Protein phosphatase type 2C, partial
(41%)
Length = 517
Score = 107 bits (266), Expect = 3e-24
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +2
Query: 4 ARHFSHGCYLIQGMMAHGMEDYVFAKHKKLNGYELGLYAIFDGHAGRDVAKYLQSHLFEN 63
++H +HG +L++G H MED+V A+ K++ ELGL AIFDGHAG +V YL+SHLF+N
Sbjct: 248 SKHVTHGFHLVKGRSYHEMEDFVVAEFKQVESNELGLXAIFDGHAGHNVPNYLRSHLFDN 427
Query: 64 ILNEPDFWKNPVHAVKKACKATDEEILE 91
IL EPDFWK P A++ A TD ILE
Sbjct: 428 ILKEPDFWKEPAKAIRTAYSITDSTILE 511
>TC20055
Length = 556
Score = 105 bits (261), Expect = 1e-23
Identities = 55/102 (53%), Positives = 67/102 (64%), Gaps = 1/102 (0%)
Frame = +2
Query: 9 HGCYLIQGMMAHGMEDYVFAKHKKLNGYELGLYAIFDGHAGRDVAKYLQSHLFENILNEP 68
+G L++G H MED+ AK + G ELGL+AI+DGH G V YLQ HLF NIL E
Sbjct: 251 YGFSLVKGKANHPMEDFHVAKFVEFKGQELGLFAIYDGHLGDTVPAYLQKHLFPNILKEE 430
Query: 69 DFWKNPVHAVKKACKATDEEILENIAD-SRGGSTAVAAILIN 109
DFW +P ++ KA +TDE IL + D RGGSTAV AILIN
Sbjct: 431 DFWNDPFMSICKAYLSTDEAILSHSPDLGRGGSTAVTAILIN 556
>TC11813 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-like protein,
partial (36%)
Length = 917
Score = 93.2 bits (230), Expect = 4e-20
Identities = 63/169 (37%), Positives = 90/169 (52%), Gaps = 23/169 (13%)
Frame = +1
Query: 107 LINGVKLLVFNVGDSRAISCKNGVAKQLTEDHEPEKERDL--VESRGGFVLNRPGSVPRV 164
LI+ ++V N GDSRA+ C+ L+ DH+P +E + +E+ GG V+ G RV
Sbjct: 16 LISSSHIIVSNCGDSRAVLCRGKEPLALSVDHKPNREDEYARIEAAGGKVIQWNGH--RV 189
Query: 165 DGILAMTRAFGDGNLKDHITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIK-- 222
G+LAM+R+ GD LK I EP+V ++ E +ILASDGLW VM N+EACD +
Sbjct: 190 FGVLAMSRSIGDRYLKPWIIPEPEVRFLPRAKEDECLILASDGLWDVMTNEEACDLARKR 369
Query: 223 ------------------DIEDAKNAAKK-LVKEAKSQGSYDDISCIVV 252
++ A AA + L A +GS D+I+ IVV
Sbjct: 370 ILLWYKKNGFELSSERGEGVDPAAQAAAEFLSNRALPKGSKDNITVIVV 516
>TC10673 homologue to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, partial
(48%)
Length = 669
Score = 81.6 bits (200), Expect = 1e-16
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Frame = +3
Query: 7 FSHGCYLIQGMMAHGMEDYVFAKHKKLNGYELGLYAIFDGHAGRDVAKYLQSHLFENILN 66
FS+G G + MED+ + + G +GL+ +FDGH G A+Y++ +LF N+++
Sbjct: 306 FSYGYASSPGKRS-SMEDFYETRIDGVEGEVVGLFGVFDGHGGARAAEYVKQNLFSNLIS 482
Query: 67 EPDFWKNPVHAVKKACKATDEEIL--ENIADSRGGSTAVAAILINGVKLLVFNVGDSRAI 124
P F + A+ A TD E L EN + GSTA AIL+ G +LLV NVGDS+A+
Sbjct: 483 HPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILV-GDRLLVANVGDSKAV 659
Query: 125 SCK 127
C+
Sbjct: 660 ICR 668
>TC8948 similar to UP|Q8VZD9 (Q8VZD9) AT5g53140/MFH8_8, partial (18%)
Length = 595
Score = 76.3 bits (186), Expect = 5e-15
Identities = 34/70 (48%), Positives = 54/70 (76%)
Frame = +2
Query: 185 AEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIEDAKNAAKKLVKEAKSQGSY 244
AEP++ R ID++TE ++LASDGLW V+ N++A ++ E+A+ AA+KL + A ++GS
Sbjct: 2 AEPEIQDRDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSA 181
Query: 245 DDISCIVVKF 254
D+I+CIVV+F
Sbjct: 182 DNITCIVVRF 211
>TC9697 similar to GB|AAM63159.1|21554078|AY085949 protein phosphatase-2C
{Arabidopsis thaliana;}, partial (33%)
Length = 833
Score = 68.9 bits (167), Expect = 8e-13
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 13/135 (9%)
Frame = +2
Query: 131 AKQLTEDHEPE--KERDLVESRGGFVLNRPGSVPRVDGILAMTRAFGDGNLK------DH 182
A ++ DH P ER VE GGF+ + ++G L++TRA GD + K
Sbjct: 5 AVDMSHDHRPSYLPERRRVEELGGFIDDG-----YLNGYLSVTRALGDWDFKLPIGAASP 169
Query: 183 ITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDC-----IKDIEDAKNAAKKLVKE 237
+ AEPDV + + ED EF+I+ DG+W VM++Q + ++ +D + A++LVKE
Sbjct: 170 LIAEPDVQLITLTEDDEFLIIGCDGIWDVMSSQVSPVSLVRRGLRRHDDPQQCARELVKE 349
Query: 238 AKSQGSYDDISCIVV 252
A + D+++ IV+
Sbjct: 350 ALRLNTSDNLTVIVI 394
>TC17915 similar to GB|AAM10415.1|20147411|AY093799 AT3g05640/F18C1_9
{Arabidopsis thaliana;}, partial (37%)
Length = 506
Score = 66.6 bits (161), Expect = 4e-12
Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 8/95 (8%)
Frame = +2
Query: 168 LAMTRAFGDGNLKDH-ITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIED 226
LAM+RAFGD +K++ + + P+V R I +F++LA+DG+W V++N+EA D + D
Sbjct: 95 LAMSRAFGDYCVKEYGLISVPEVTQRNITSKDQFVVLATDGVWDVISNEEAVDIVSSTAD 274
Query: 227 AKNAAKKLVK------EAKSQG-SYDDISCIVVKF 254
++AK+LVK + K +G + DDIS I + F
Sbjct: 275 RTDSAKRLVKCAMRAWKRKRRGIAMDDISAICLFF 379
>CN825589
Length = 544
Score = 66.2 bits (160), Expect = 5e-12
Identities = 35/88 (39%), Positives = 53/88 (59%), Gaps = 1/88 (1%)
Frame = +3
Query: 162 PRVDGILAMTRAFGDGNLKDHITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCI 221
PRV G+LAM+RA GD LK ++ +EP+V + ++ E +ILASDGLW V++N AC +
Sbjct: 39 PRVLGVLAMSRAIGDNYLKPYVISEPEVTVTDRTDEDECLILASDGLWDVVSNDTACGVV 218
Query: 222 KDIEDAKNAAKKLVKEAKSQGS-YDDIS 248
+ K K+ GS Y+D++
Sbjct: 219 R-------MCLKAQKQLSPPGSPYEDVA 281
>AV424435
Length = 280
Score = 62.4 bits (150), Expect = 7e-11
Identities = 32/92 (34%), Positives = 51/92 (54%)
Frame = +1
Query: 38 LGLYAIFDGHAGRDVAKYLQSHLFENILNEPDFWKNPVHAVKKACKATDEEILENIADSR 97
+ Y +FDGH G+ A++++ HL I+ + DF V K+ TD E + +
Sbjct: 1 ISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTKSFLETDAEFAKTCSSES 180
Query: 98 GGSTAVAAILINGVKLLVFNVGDSRAISCKNG 129
G+TA+ AI++ G LLV N GD RA+ ++G
Sbjct: 181 SGTTALTAIIL-GRSLLVANAGDCRAVLSRSG 273
>TC18443 similar to GB|AAM10409.1|20147399|AY093793 At2g20630/F23N11.5
{Arabidopsis thaliana;}, partial (18%)
Length = 515
Score = 61.6 bits (148), Expect = 1e-10
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = +1
Query: 206 DGLWKVMANQEACDCIKDIEDAKNAAKKLVKEAKSQGSYDDISCIVVKF 254
DG+WKVM+NQ+A D I+ I++A+ AA++L+ +A S+ S DDISCIVVKF
Sbjct: 1 DGIWKVMSNQKAVDFIRQIKNAQAAAERLI*KAVSKKSKDDISCIVVKF 147
>TC11286 homologue to GB|AAO63448.1|28951049|BT005384 At4g03415 {Arabidopsis
thaliana;}, partial (46%)
Length = 996
Score = 60.5 bits (145), Expect = 3e-10
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Frame = +3
Query: 130 VAKQLTEDHEPE--KERDLVESRGG--FVLNRPGSVPRV----DGI--LAMTRAFGDGNL 179
VA QLT D +P+ +E + ++ G F L VPRV D LAM RAFGD L
Sbjct: 18 VAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCL 197
Query: 180 KDH-ITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIEDAKNAAKKLVKEA 238
K++ + + P+ R++ + +FI++ASDG+W V++N+E + + +AA+ +V A
Sbjct: 198 KEYGVISIPEFSHRQLTDRDQFIVIASDGVWDVLSNEEVVEIVSSSPTRASAARTVVNSA 377
>BP068246
Length = 528
Score = 57.4 bits (137), Expect = 2e-09
Identities = 34/83 (40%), Positives = 49/83 (58%), Gaps = 6/83 (7%)
Frame = -1
Query: 172 RAFGDGNLKDHITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIEDAKN-- 229
R+ GD +L+ +TAEP+ + I+ + + +ILASDGLW ++NQEA D + + N
Sbjct: 528 RSIGDRHLQLWLTAEPET*VIYIEPEPDLLILASDGLWDKVSNQEAVDLARPLCVGNNQP 349
Query: 230 ----AAKKLVKEAKSQGSYDDIS 248
A KLV A S+GS DD S
Sbjct: 348 QSLLACPKLVDLACSRGSMDDTS 280
>TC14935 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-like protein,
partial (56%)
Length = 1089
Score = 54.3 bits (129), Expect = 2e-08
Identities = 51/176 (28%), Positives = 82/176 (45%), Gaps = 33/176 (18%)
Frame = +1
Query: 96 SRGGSTAVAAILINGVKLLVFNVGDSRAISCK-----NGVAK-QLTEDHEPEKE------ 143
+ GS + ++ L V N GDSR + K +GVA QL+ +H E
Sbjct: 85 ANAGSCCLVGVIFQQT-LFVANAGDSRVVLGKKVGNTDGVAAIQLSTEHNANLEAIREEL 261
Query: 144 RDLVESRGGFVLNRPGSVPRVDGILAMTRAFGDGNLKDH--------------------- 182
R+L + V+ + G V +V GI+ ++R+ GD +KD
Sbjct: 262 RELHPNDPQIVVLKYG-VWKVKGIIQVSRSIGDVYMKDARFNREPLAAKFRLPEPMNMPI 438
Query: 183 ITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIEDAKNAAKKLVKEA 238
+TA P ++ + + F+I ASDGLW+ ++N++A D + A +AK LVK A
Sbjct: 439 MTANPTILSHSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRA-GSAKILVKAA 603
>TC14934 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-like protein,
partial (57%)
Length = 932
Score = 53.1 bits (126), Expect = 4e-08
Identities = 47/164 (28%), Positives = 76/164 (45%), Gaps = 33/164 (20%)
Frame = +1
Query: 113 LLVFNVGDSRAISCKN-----GVAK-QLTEDHEPEKE------RDLVESRGGFVLNRPGS 160
L V N+GDSR + K GVA QL+ +H E ++L V+ + G
Sbjct: 49 LFVANLGDSRCVLGKKVGNTGGVAAIQLSTEHNANLEDIRQELKELHPDDPQIVVLKHG- 225
Query: 161 VPRVDGILAMTRAFGDGNLKDH---------------------ITAEPDVMIRKIDEDTE 199
V RV GI+ ++R+ GD +K ++A P ++ +
Sbjct: 226 VWRVKGIIQVSRSIGDSYMKHAQFNREPINPKFRLPEPMNMPIMSANPTILSHPLQPSDS 405
Query: 200 FIILASDGLWKVMANQEACDCIKDIEDAKNAAKKLVKEAKSQGS 243
F+I ASDGLW+ ++N++A D + A +AK+LVK A + +
Sbjct: 406 FLIFASDGLWEHLSNEQAVDIVHSNPRA-GSAKRLVKAALQEAA 534
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,055,289
Number of Sequences: 28460
Number of extensions: 45028
Number of successful extensions: 233
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of query: 254
length of database: 4,897,600
effective HSP length: 88
effective length of query: 166
effective length of database: 2,393,120
effective search space: 397257920
effective search space used: 397257920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0007.1