BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0006.8
(1142 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV409033 285 2e-77
BP042557 274 5e-74
AV410062 209 2e-54
TC10194 similar to UP|Q8S979 (Q8S979) Auxin response factor 7a (... 201 5e-52
TC19318 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 194 5e-50
BP049491 136 2e-32
BP055405 114 1e-25
TC8527 similar to UP|O24411 (O24411) IAA21 (Fragment), partial (... 104 7e-23
TC13094 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 98 6e-21
BP043161 92 5e-19
TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 92 6e-19
TC14787 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response facto... 87 1e-17
AV779806 85 6e-17
TC12865 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response facto... 83 3e-16
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 76 3e-14
AV418552 75 4e-14
AV781081 70 1e-12
AV408212 70 2e-12
AI967501 66 3e-11
AV422734 66 3e-11
>AV409033
Length = 418
Score = 285 bits (730), Expect = 2e-77
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = +3
Query: 8 YLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSY 67
YLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSY
Sbjct: 6 YLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSY 185
Query: 68 PNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDMGLKQNRQPTEFFC 127
PNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDMGLKQNRQPTEFFC
Sbjct: 186 PNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDMGLKQNRQPTEFFC 365
Query: 128 KTLTASDTSTHGGFSVP 144
KTLTASDTSTHGGFSVP
Sbjct: 366 KTLTASDTSTHGGFSVP 416
>BP042557
Length = 545
Score = 274 bits (701), Expect = 5e-74
Identities = 133/161 (82%), Positives = 146/161 (90%)
Frame = +2
Query: 125 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRG 184
+FCKTLTASDTSTHGGFSVPRRAAEK+FPPLDYS QPPAQEL+A+DL+D W FRHI+RG
Sbjct: 62 YFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLNDNEWKFRHIFRG 241
Query: 185 QPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSM 244
QPKRHLLTTGWSVFVS KRL AGDSVLFI +EK QLLLGIRRANR Q + SSV+SSDSM
Sbjct: 242 QPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRSQTIMPSSVLSSDSM 421
Query: 245 HIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKFNKA 285
HIG+LAAAAHAA+ NS FTIFYNPRASPSEFVIPLA++ KA
Sbjct: 422 HIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAQYVKA 544
>AV410062
Length = 435
Score = 209 bits (532), Expect = 2e-54
Identities = 103/143 (72%), Positives = 121/143 (84%), Gaps = 2/143 (1%)
Frame = +3
Query: 32 LVSLPPVGSLVVYFPQGHSEQVAASMQKETD-FIPSYPNLPSKLICMLHNVALHADPETD 90
LVSLP +GS VVYFPQGHSEQVA S KE D IP+YP+LP +LIC LHNV +HAD ETD
Sbjct: 3 LVSLPALGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETD 182
Query: 91 EVYAQMTLQPVNKYD-KDAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAE 149
EVYAQMTLQP+N + K+A L +++G ++QPT +FCKTLTASDTSTHGGFSVPRRAAE
Sbjct: 183 EVYAQMTLQPLNPQEQKEAYLPAELGTP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAE 359
Query: 150 KIFPPLDYSMQPPAQELVAKDLH 172
K+FPPLD+S QPPAQEL+A+DLH
Sbjct: 360 KVFPPLDFSQQPPAQELIARDLH 428
>TC10194 similar to UP|Q8S979 (Q8S979) Auxin response factor 7a (Fragment),
partial (13%)
Length = 1293
Score = 201 bits (511), Expect = 5e-52
Identities = 107/168 (63%), Positives = 124/168 (73%), Gaps = 9/168 (5%)
Frame = +1
Query: 968 ELSTADISSQSFGVPNMTFNPGCSGDVGINDTGVLNNGLRANQT---------QRMRTYT 1018
ELS++ +S Q+FGVP+MTFN S D I+D+ LN Q QRMRTYT
Sbjct: 1 ELSSSMVS-QTFGVPDMTFN---SIDSTIDDSSFLNGDPWGPQPAPPPPPAQFQRMRTYT 168
Query: 1019 KVQKRGSVGRCIDVTRYKGYDELRNDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVG 1078
KV KRG+VGR ID+ RY GY+EL+ DLAR FGIEGQLED QR WKLVYVDHE D+LLVG
Sbjct: 169 KVYKRGAVGRSIDIARYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHEGDVLLVG 348
Query: 1079 DDPWEEFVSCVQSIKILSYTEVQQMSLDGDLGNVPIPNQACSGTDSGN 1126
DDPWEEFV+CV+ IKILS EVQQMSLDGD G+ +PNQACS +D GN
Sbjct: 349 DDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGSGGLPNQACSSSDGGN 492
>TC19318 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (23%)
Length = 585
Score = 194 bits (494), Expect = 5e-50
Identities = 95/147 (64%), Positives = 115/147 (77%)
Frame = +3
Query: 127 CKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRGQP 186
CKTLTASDTST GGFSV RR A++ PPLD S QPP Q LVAKDLH + W FRHI+ GQP
Sbjct: 36 CKTLTASDTSTDGGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRFRHIFLGQP 215
Query: 187 KRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHI 246
+RHLL +GWSVFVS+KRL AGD+ +F+R E +L +G+RRA RQQ +SSSVISS S+H+
Sbjct: 216 RRHLLLSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVSSSVISSPSLHL 395
Query: 247 GILAAAAHAAANNSPFTIFYNPRASPS 273
G+LA+A HA S FT++Y PR SPS
Sbjct: 396 GVLASAWHANLTGSMFTVYY*PRTSPS 476
>BP049491
Length = 516
Score = 136 bits (343), Expect = 2e-32
Identities = 67/127 (52%), Positives = 85/127 (66%)
Frame = -3
Query: 143 VPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRGQPKRHLLTTGWSVFVSTK 202
VPRRAAE PPLDY Q P+QELVAKDLH W F HIYRG P+ HLLTTGWS+FVS
Sbjct: 514 VPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIYRG*PRWHLLTTGWSIFVSQN 335
Query: 203 RLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPF 262
L +GD+V F+R E +L LGIRR+ + L S + + + + IL+ A+A + S F
Sbjct: 334 NLVSGDAVSFLRGENGELRLGIRRSVGPRNGLPESTVGNQNSYPHILSVVANAISTRSMF 155
Query: 263 TIFYNPR 269
+FY+PR
Sbjct: 154 YVFYSPR 134
>BP055405
Length = 512
Score = 114 bits (284), Expect = 1e-25
Identities = 56/81 (69%), Positives = 60/81 (73%)
Frame = -3
Query: 338 DESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAMPWL 397
DEST GE SRVSIW IEPVVTPFY PP F RPKFP PGMPDDE D+ENAFKRA+PWL
Sbjct: 405 DESTTGEHXSRVSIW*IEPVVTPFYGYPPLFLRPKFPWXPGMPDDEYDLENAFKRAVPWL 226
Query: 398 GDDFGMKDASGSIFPGLSLVQ 418
F MKD S+F SL+Q
Sbjct: 225 EGGFVMKDELSSVFDVFSLLQ 163
>TC8527 similar to UP|O24411 (O24411) IAA21 (Fragment), partial (13%)
Length = 709
Score = 104 bits (260), Expect = 7e-23
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 1095 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 1142
LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR
Sbjct: 3 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 146
>TC13094 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (18%)
Length = 685
Score = 98.2 bits (243), Expect = 6e-21
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +2
Query: 23 ELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETD-FIPSYPNLPSKLICMLHNV 81
ELWHACAGPLV++P G V YFPQGH EQV AS + D +P Y +LPSK++C + NV
Sbjct: 374 ELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVY-DLPSKILCRVINV 550
Query: 82 ALHADPETDEVYAQMTLQPVNKYDKDAI 109
L A+P+TDEV+AQ+TL P D++A+
Sbjct: 551 QLKAEPDTDEVFAQVTLLPEPNQDENAV 634
>BP043161
Length = 509
Score = 92.0 bits (227), Expect = 5e-19
Identities = 42/62 (67%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Frame = +2
Query: 15 GERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETD-FIPSYPNLPSK 73
GE+K +NSELWHACAGPLVSLP G+ VVYFPQGHSEQV+A+ +E D +P+YP+LP +
Sbjct: 323 GEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREVDGHMPNYPSLPPQ 502
Query: 74 LI 75
LI
Sbjct: 503 LI 508
>TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (13%)
Length = 588
Score = 91.7 bits (226), Expect = 6e-19
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = +3
Query: 23 ELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVA 82
ELWHACAGPLV++P G V YFPQGH EQV AS + + +LP K++C + NV
Sbjct: 354 ELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAELHMPVYDLPPKILCRVINVM 533
Query: 83 LHADPETDEVYAQMTLQP 100
L A+P+TDEV+AQ+TL P
Sbjct: 534 LKAEPDTDEVFAQVTLLP 587
>TC14787 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response factor 6), partial
(8%)
Length = 614
Score = 87.0 bits (214), Expect = 1e-17
Identities = 44/73 (60%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = +2
Query: 1045 LARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSYTEVQQMS 1104
LARMFG+EG+LEDP R+ W+LV+VD E+D+LL+GD PW EFV+ V IKILS E+QQM
Sbjct: 2 LARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMG 181
Query: 1105 LDG--DLGNVPIP 1115
G L +VP P
Sbjct: 182 NTGLELLNSVPNP 220
>AV779806
Length = 546
Score = 85.1 bits (209), Expect = 6e-17
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +2
Query: 14 EGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETD 62
EGE+K +NSEL HACAGPLVSLPP+GS VVYFPQGHSEQVAAS +E D
Sbjct: 383 EGEKKCLNSELGHACAGPLVSLPPIGSRVVYFPQGHSEQVAASTNREVD 529
>TC12865 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response factor 6), partial
(6%)
Length = 659
Score = 82.8 bits (203), Expect = 3e-16
Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Frame = +2
Query: 1044 DLARMFGIEGQLEDPQ--RTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSYTEVQ 1101
+LAR+FG EGQLEDP R+ W+LV+VD ENDILL+GDDPW+EFV+ V IKILS EV
Sbjct: 2 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSPLEVP 181
Query: 1102 QM 1103
+M
Sbjct: 182 EM 187
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 76.3 bits (186), Expect = 3e-14
Identities = 55/115 (47%), Positives = 67/115 (57%), Gaps = 1/115 (0%)
Frame = +2
Query: 493 QQQQQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQ-QQSQQQQLQ 551
QQ Q QQQQQ QQQ QL QQQQ QQQ Q QQQQL Q QQQQL Q QQ Q QLQ
Sbjct: 2 QQLPQLQQQQQLQQQPPQLTQLQQQQ--QQQLPQVQQQQLSQMQQQQLPQLQQQQLSQLQ 175
Query: 552 SLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQQSQKAIMSNGVVASNQIT 606
Q+P QLQQ + QQLP+ + QQ + +GQ + + +V+ Q++
Sbjct: 176 PQQQLP--QLQQLQHQQLPQQQ-----QQMVGAGMGQAYVQGPGRSQMVSQGQVS 319
Score = 69.7 bits (169), Expect = 2e-12
Identities = 50/98 (51%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Frame = +2
Query: 475 PNLPNQINQLHQSPVSWPQQQQQQQQQQQQ-QQQQLQLQHQQQQQQLQQQQQQQQQQQLQ 533
P L Q QL Q P Q QQQQQQQ Q QQQQL QQQ QLQQQQ Q Q Q Q
Sbjct: 11 PQLQQQ-QQLQQQPPQLTQLQQQQQQQLPQVQQQQLSQMQQQQLPQLQQQQLSQLQPQQQ 187
Query: 534 QQQQQQLQQQQSQQQQLQSLLQIPMNQ--LQQPRQQQL 569
Q QQLQ QQ QQQ Q ++ M Q +Q P + Q+
Sbjct: 188 LPQLQQLQHQQLPQQQ-QQMVGAGMGQAYVQGPGRSQM 298
Score = 58.2 bits (139), Expect = 7e-09
Identities = 39/86 (45%), Positives = 42/86 (48%)
Frame = +2
Query: 461 QAPALSAPSLQFNKPNLPNQINQLHQSPVSWPQQQQQQQQQQQQQQQQLQLQHQQQQQQL 520
Q P L +P Q+ Q Q + QQQQ Q QQQQ Q QQQQL
Sbjct: 5 QLPQLQQQQQLQQQPPQLTQLQQQQQQQLPQVQQQQLSQMQQQQLP-------QLQQQQL 163
Query: 521 QQQQQQQQQQQLQQQQQQQLQQQQSQ 546
Q Q QQQ QLQQ Q QQL QQQ Q
Sbjct: 164 SQLQPQQQLPQLQQLQHQQLPQQQQQ 241
Score = 55.1 bits (131), Expect = 6e-08
Identities = 41/99 (41%), Positives = 50/99 (50%)
Frame = +2
Query: 521 QQQQQQQQQQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQ 580
QQ Q QQQQQLQQQ Q Q QQ QQQQL Q +QQQL + + QQ
Sbjct: 2 QQLPQLQQQQQLQQQPPQLTQLQQQQQQQLP-----------QVQQQQLSQ-----MQQQ 133
Query: 581 QLPQQLGQQSQKAIMSNGVVASNQITNQLVLQQQQLLSG 619
QLPQ QQ + + Q+ +Q + QQQQ + G
Sbjct: 134 QLPQLQQQQLSQLQPQQQLPQLQQLQHQQLPQQQQQMVG 250
Score = 45.1 bits (105), Expect = 7e-05
Identities = 41/109 (37%), Positives = 47/109 (42%), Gaps = 7/109 (6%)
Frame = +2
Query: 660 QQLPQQTQLQQSSLHLLQQNQPQRAPQQPPVATM----SQQTPSEQQLHLQLLQKLQQHQ 715
QQLPQ Q QQ LQQ PQ + + QQ P QQ L +Q+ Q Q
Sbjct: 2 QQLPQLQQQQQ-----LQQQPPQ-------LTQLQQQQQQQLPQVQQQQLSQMQQQQLPQ 145
Query: 716 QHQQLLSTSSP---LLQPQLLQQQSTPQQNQQLTQLPASQHQTQQLGNN 761
QQ LS P L Q Q LQ Q PQQ QQ+ Q Q G +
Sbjct: 146 LQQQQLSQLQPQQQLPQLQQLQHQQLPQQQQQMVGAGMGQAYVQGPGRS 292
Score = 44.3 bits (103), Expect = 1e-04
Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +2
Query: 468 PSLQFNKPNLPNQINQLHQSPVSWPQQQQQ---QQQQQQQQQQQLQLQHQQQQQQLQQQQ 524
P L + Q+ Q+ Q +S QQQQ QQQQ Q Q Q QL Q QQLQ QQ
Sbjct: 50 PQLTQLQQQQQQQLPQVQQQQLSQMQQQQLPQLQQQQLSQLQPQQQL---PQLQQLQHQQ 220
Query: 525 QQQQQQQLQQQQQQQLQQQQSQQQQLQSLLQI 556
QQQQQ+ Q Q + Q+ S Q+
Sbjct: 221 LPQQQQQMVGAGMGQAYVQGPGRSQMVSQGQV 316
Score = 42.0 bits (97), Expect = 6e-04
Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 480 QINQLHQSPVSWPQQQQQQQQQQQQQQQQLQ-LQHQQQQQQLQQQQQQQQQQQLQQQQQQ 538
Q++Q+ Q + QQQQ Q Q QQQ QLQ LQHQQ QQ QQ Q Q +
Sbjct: 110 QLSQMQQQQLPQLQQQQLSQLQPQQQLPQLQQLQHQQLPQQQQQMVGAGMGQAYVQGPGR 289
Query: 539 QLQQQQSQQQQ 549
Q Q Q
Sbjct: 290 SQMVSQGQVSQ 322
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/133 (35%), Positives = 53/133 (39%)
Frame = +2
Query: 535 QQQQQLQQQQSQQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQQSQKAI 594
QQ QLQQQQ QQQ P+ QL + + LPQ Q QQL Q Q+ +
Sbjct: 2 QQLPQLQQQQQLQQQ-------------PPQLTQLQQQQQQQLPQVQ-QQQLSQMQQQQL 139
Query: 595 MSNGVVASNQITNQLVLQQQQLLSGGISPQQSIHSASKTTFPLTSLPQESQFLQQIDQQA 654
LQQQQL + PQQ LPQ LQQ
Sbjct: 140 PQ--------------LQQQQL--SQLQPQQ-------------QLPQ----LQQ----- 205
Query: 655 SLLQRQQLPQQTQ 667
LQ QQLPQQ Q
Sbjct: 206 --LQHQQLPQQQQ 238
Score = 37.4 bits (85), Expect = 0.014
Identities = 54/151 (35%), Positives = 58/151 (37%), Gaps = 1/151 (0%)
Frame = +2
Query: 529 QQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQ 588
QQ Q QQQQQLQQQ Q + QLQQ +QQQ LPQ Q QQL Q
Sbjct: 2 QQLPQLQQQQQLQQQPPQ-----------LTQLQQQQQQQ--------LPQVQ-QQQLSQ 121
Query: 589 QSQKAIMSNGVVASNQITNQLVLQQQQLLSGGISPQQSIHSASKTTFPLTSLPQESQFLQ 648
+QQQQL PQ LQ
Sbjct: 122 ----------------------MQQQQL------------------------PQ----LQ 151
Query: 649 QIDQQASLLQ-RQQLPQQTQLQQSSLHLLQQ 678
Q QQ S LQ +QQLPQ QLQ L QQ
Sbjct: 152 Q--QQLSQLQPQQQLPQLQQLQHQQLPQQQQ 238
Score = 36.6 bits (83), Expect = 0.023
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +2
Query: 642 QESQFLQQIDQQASLLQRQQLPQQTQLQ------QSSLHLLQQNQPQRAPQQ 687
Q+ Q Q QQ S +Q+QQLPQ Q Q Q L LQQ Q Q+ PQQ
Sbjct: 77 QQQQLPQVQQQQLSQMQQQQLPQLQQQQLSQLQPQQQLPQLQQLQHQQLPQQ 232
>AV418552
Length = 386
Score = 75.5 bits (184), Expect = 4e-14
Identities = 52/104 (50%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Frame = +2
Query: 492 PQQQQQQQQQQQQQQ------QQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQS 545
P Q+QQ QQ QQ QQ L H Q QQQLQQQQ Q QQQL Q Q LQQQQ
Sbjct: 44 PSSQEQQLMQQHQQMLSYFQPQQQLLPHLQLQQQLQQQQLAQLQQQLSQLQLTLLQQQQL 223
Query: 546 QQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQQ 589
Q Q Q L Q+ QQ Q QL + ++ L QQ LPQQ QQ
Sbjct: 224 TQLQQQQLAQLQ----QQLAQLQLTQHQHTQLQQQLLPQQQFQQ 343
Score = 69.3 bits (168), Expect = 3e-12
Identities = 53/118 (44%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 472 FNKPNLPNQINQLHQSPVSWPQQQQQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQ 531
F + Q+ Q HQ +S+ Q QQQ Q QQQ LQ QQ QLQQQ Q Q
Sbjct: 38 FEPSSQEQQLMQQHQQMLSYFQPQQQLLPHLQLQQQ---LQQ-QQLAQLQQQLSQLQLTL 205
Query: 532 LQQQQQQQLQQQQ-SQQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQ 588
LQQQQ QLQQQQ +Q QQ + LQ+ +Q Q +QQ LP+ + LPQ Q Q +G+
Sbjct: 206 LQQQQLTQLQQQQLAQLQQQLAQLQLTQHQHTQLQQQLLPQQQFQQLPQHQ--QMVGE 373
Score = 57.4 bits (137), Expect = 1e-08
Identities = 46/121 (38%), Positives = 59/121 (48%)
Frame = +2
Query: 501 QQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQ 560
+ Q+QQL QHQQ Q QQQ QLQQQ QQ QQ +Q QQ S LQ+ + Q
Sbjct: 41 EPSSQEQQLMQQHQQMLSYFQPQQQLLPHLQLQQQLQQ---QQLAQLQQQLSQLQLTLLQ 211
Query: 561 LQQPRQQQLPEPKNLPLPQQQLPQQLGQQSQKAIMSNGVVASNQITNQLVLQQQQLLSGG 620
QQ Q Q + L QQQL Q Q Q + ++ Q Q + Q QQ++ G
Sbjct: 212 QQQLTQLQQQQLAQL---QQQLAQLQLTQHQHTQLQQQLLPQQQF--QQLPQHQQMVGEG 376
Query: 621 I 621
+
Sbjct: 377 M 379
Score = 55.8 bits (133), Expect = 4e-08
Identities = 44/105 (41%), Positives = 48/105 (44%), Gaps = 2/105 (1%)
Frame = +2
Query: 442 PNTLHSNLGTDDPSKLLSFQAPALSAPSLQFNKPNLPNQINQLHQSPVSWPQQQQQQQQQ 501
P++ L L FQ P LQ + Q+ QL Q QQQQ
Sbjct: 44 PSSQEQQLMQQHQQMLSYFQPQQQLLPHLQLQQQLQQQQLAQLQQQLSQLQLTLLQQQQL 223
Query: 502 QQQQQQQL-QLQHQQQQQQLQQQQQQQQQQQLQQQQQ-QQLQQQQ 544
Q QQQQL QLQ Q Q QL Q Q Q QQQL QQQ QQL Q Q
Sbjct: 224 TQLQQQQLAQLQQQLAQLQLTQHQHTQLQQQLLPQQQFQQLPQHQ 358
Score = 49.3 bits (116), Expect = 3e-06
Identities = 48/118 (40%), Positives = 57/118 (47%), Gaps = 4/118 (3%)
Frame = +2
Query: 608 QLVLQQQQLLSGGISPQQSIHSASKTTFPLTSLPQE--SQFLQQIDQQASLLQRQQLPQQ 665
QL+ Q QQ+LS PQQ + P L Q+ Q L Q+ QQ S LQ L QQ
Sbjct: 62 QLMQQHQQMLSY-FQPQQQL-------LPHLQLQQQLQQQQLAQLQQQLSQLQLTLLQQQ 217
Query: 666 --TQLQQSSLHLLQQNQPQRAPQQPPVATMSQQTPSEQQLHLQLLQKLQQHQQHQQLL 721
TQLQQ L LQQ Q T Q T +QQL Q Q+ QQ QHQQ++
Sbjct: 218 QLTQLQQQQLAQLQQQLAQLQ------LTQHQHTQLQQQLLPQ--QQFQQLPQHQQMV 367
Score = 48.1 bits (113), Expect = 8e-06
Identities = 49/121 (40%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = +2
Query: 642 QESQFLQQIDQQASLLQRQQLPQQTQLQQSSLHLLQQNQPQRAPQQPPVATMSQQTPSEQ 701
QE Q +QQ Q S Q QQ LL Q Q+ QQ +A + QQ
Sbjct: 53 QEQQLMQQHQQMLSYFQPQQ------------QLLPHLQLQQQLQQQQLAQLQQQL---S 187
Query: 702 QLHLQLLQKLQQHQ-QHQQLLSTSSPLLQPQL-------LQQQSTPQQNQQLTQLPASQH 753
QL L LLQ+ Q Q Q QQL L Q QL LQQQ PQ QQ QLP QH
Sbjct: 188 QLQLTLLQQQQLTQLQQQQLAQLQQQLAQLQLTQHQHTQLQQQLLPQ--QQFQQLP--QH 355
Query: 754 Q 754
Q
Sbjct: 356 Q 358
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/101 (40%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Frame = +2
Query: 664 QQTQLQQSSLHLLQQNQPQRAPQQPPVATMSQQTPSEQQLHLQLLQKLQQH---QQHQQL 720
Q+ QL Q +L QPQ+ Q P HLQL Q+LQQ Q QQL
Sbjct: 53 QEQQLMQQHQQMLSYFQPQQ-----------QLLP-----HLQLQQQLQQQQLAQLQQQL 184
Query: 721 LSTSSPLLQPQ---LLQQQSTPQQNQQLTQLPASQHQTQQL 758
LLQ Q LQQQ Q QQL QL +QHQ QL
Sbjct: 185 SQLQLTLLQQQQLTQLQQQQLAQLQQQLAQLQLTQHQHTQL 307
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/100 (37%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +2
Query: 695 QQTPSEQQLHLQLLQKLQQHQQHQQLLSTSSPLLQ-PQLLQQQSTPQQNQQLTQLPASQH 753
+ + EQQL Q Q L Q QQLL P LQ Q LQQQ Q QQL+QL +
Sbjct: 41 EPSSQEQQLMQQHQQMLSYFQPQQQLL----PHLQLQQQLQQQQLAQLQQQLSQLQLTLL 208
Query: 754 QTQQLGNNAFSTEKVLNSNSFSSSLMQPHQLPVNHPQNTQ 793
Q QQL L + Q QL + Q+TQ
Sbjct: 209 QQQQLTQ--------LQQQQLAQLQQQLAQLQLTQHQHTQ 304
>AV781081
Length = 528
Score = 70.5 bits (171), Expect = 1e-12
Identities = 35/54 (64%), Positives = 37/54 (67%)
Frame = +2
Query: 3 APSNCYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAAS 56
A N + G K IN ELWHACAGPLVSLP +GSL YFPQGH EQVAAS
Sbjct: 356 AEMNLLKEHCGSRFPKGINPELWHACAGPLVSLPQLGSLAYYFPQGHIEQVAAS 517
>AV408212
Length = 362
Score = 70.1 bits (170), Expect = 2e-12
Identities = 38/61 (62%), Positives = 40/61 (65%)
Frame = +3
Query: 488 PVSWPQQQQQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQ 547
P P QQQQQQQ Q QQ LQ QQQQ QQQQQQQQQQQ Q QQQQ QQQS+
Sbjct: 6 PQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQSRD 185
Query: 548 Q 548
+
Sbjct: 186 R 188
Score = 69.7 bits (169), Expect = 2e-12
Identities = 41/72 (56%), Positives = 43/72 (58%), Gaps = 2/72 (2%)
Frame = +3
Query: 492 PQQQ--QQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQQQ 549
PQQ QQQQQQQ Q QQ+ LQ QQ QQQQQQQQQQQ QQQ QQQ Q Q Q +
Sbjct: 6 PQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQSRD 185
Query: 550 LQSLLQIPMNQL 561
LL N L
Sbjct: 186 RAHLLNGSANGL 221
Score = 67.8 bits (164), Expect = 9e-12
Identities = 36/59 (61%), Positives = 39/59 (66%)
Frame = +3
Query: 494 QQQQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQQQLQS 552
Q QQ QQQQQQQ +Q+Q Q+ QQQQQQQQQ QQQQQQQ QQQ Q Q QS
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQS 179
Score = 58.2 bits (139), Expect = 7e-09
Identities = 33/58 (56%), Positives = 36/58 (61%)
Frame = +3
Query: 505 QQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQLQ 562
Q QQ Q QQQQQ +Q QQ Q+ QQQQQQ QQQQ QQQQ QS Q P +Q Q
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQ 176
Score = 56.6 bits (135), Expect = 2e-08
Identities = 35/65 (53%), Positives = 38/65 (57%), Gaps = 3/65 (4%)
Frame = +3
Query: 507 QQLQLQHQQQQQQLQQQQQQ---QQQQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQLQQ 563
Q Q HQQQQQQ Q QQ Q+ LQQQQQQQ QQQQ QQQQ +Q QQ
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQ--------QSQQQQ 158
Query: 564 PRQQQ 568
P+ QQ
Sbjct: 159 PQSQQ 173
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/58 (56%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Frame = +3
Query: 483 QLHQSPVSWPQQQQQQQQQQ---------QQQQQQLQLQHQQQQQQLQQQQQQQQQQQ 531
Q QSP QQQQ Q QQ QQQQQQ Q Q QQQQQQ QQQQ Q QQQ
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQ 176
Score = 46.6 bits (109), Expect = 2e-05
Identities = 33/95 (34%), Positives = 46/95 (47%), Gaps = 4/95 (4%)
Frame = +3
Query: 525 QQQQQQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQ 584
Q QQ QQQQQQ +Q QQ Q+ +L Q Q QQ +QQQ + QQQ PQ
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQ------SQQQQPQ 164
Query: 585 QLGQQSQKAIM----SNGVVASNQITNQLVLQQQQ 615
Q +A + +NG+V ++ N L + +
Sbjct: 165 SQQQSRDRAHLLNGSANGLVGNSGTANALATKMYE 269
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 695 QQTPSEQQLHLQLLQKLQQHQQHQQLLSTSSPLLQPQLLQQQSTPQQNQQ---LTQLPAS 751
QQ+P +QQ + QQH Q QQ+L LQ Q QQQ QQ QQ Q P S
Sbjct: 9 QQSPHQQQ-------QQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQS 167
Query: 752 QHQTQQLGNNAFSTEKVLNSNSFSSSLM 779
Q Q++ + + L NS +++ +
Sbjct: 168 QQQSRDRAHLLNGSANGLVGNSGTANAL 251
Score = 34.7 bits (78), Expect = 0.088
Identities = 20/35 (57%), Positives = 21/35 (59%)
Frame = +3
Query: 484 LHQSPVSWPQQQQQQQQQQQQQQQQLQLQHQQQQQ 518
L Q QQQQQQQQQQ QQQQ Q QQQ +
Sbjct: 87 LQQQQQQQQQQQQQQQQQQSQQQQP---QSQQQSR 182
Score = 33.1 bits (74), Expect = 0.26
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 641 PQESQFLQQIDQQASLLQRQQLPQQTQLQQSSLHLLQQNQPQRAPQQPPVATMSQQTPSE 700
PQ+S QQ QQ +Q+ L + LQQ QQ Q Q+ Q SQQ S
Sbjct: 6 PQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQ-QSR 182
Query: 701 QQLHL 705
+ HL
Sbjct: 183 DRAHL 197
Score = 32.0 bits (71), Expect = 0.57
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 481 INQLHQSPVSWPQQQQQQQQQQQQQQQQLQ 510
+ Q Q QQQQQQQ QQQQ Q Q Q
Sbjct: 87 LQQQQQQQQQQQQQQQQQQSQQQQPQSQQQ 176
Score = 30.8 bits (68), Expect = 1.3
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 480 QINQLHQSPVSWPQQQQQQQQQQQQQQQQ 508
Q Q Q QQQQQ QQQQ Q QQQ
Sbjct: 90 QQQQQQQQQQQQQQQQQQSQQQQPQSQQQ 176
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +3
Query: 480 QINQLHQSPVSWPQQQQQQQQQQQQQQQQLQLQH 513
Q Q Q QQQQ QQQQ Q QQQ H
Sbjct: 93 QQQQQQQQQQQQQQQQQSQQQQPQSQQQSRDRAH 194
Score = 28.5 bits (62), Expect = 6.3
Identities = 15/32 (46%), Positives = 16/32 (49%)
Frame = +3
Query: 477 LPNQINQLHQSPVSWPQQQQQQQQQQQQQQQQ 508
L Q Q Q QQQ QQQQ Q QQQ +
Sbjct: 87 LQQQQQQQQQQQQQQQQQQSQQQQPQSQQQSR 182
>AI967501
Length = 393
Score = 66.2 bits (160), Expect = 3e-11
Identities = 31/68 (45%), Positives = 49/68 (71%), Gaps = 1/68 (1%)
Frame = +1
Query: 1015 RTYTKVQKRG-SVGRCIDVTRYKGYDELRNDLARMFGIEGQLEDPQRTDWKLVYVDHEND 1073
R+ TKVQ +G +VGR +D+ GYD+L ++L ++F ++GQL+ R W++V+ D E D
Sbjct: 190 RSRTKVQMQGVAVGRAVDLNTLDGYDQLIDELEQLFDLKGQLQ--HRNKWEIVFTDDEGD 363
Query: 1074 ILLVGDDP 1081
++LVGDDP
Sbjct: 364 MMLVGDDP 387
>AV422734
Length = 448
Score = 66.2 bits (160), Expect = 3e-11
Identities = 48/127 (37%), Positives = 60/127 (46%), Gaps = 21/127 (16%)
Frame = +1
Query: 489 VSWPQQQQQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQQ 548
+SW + ++ + QQ Q Q Q QHQQ QQQL QQQQQQQQ QQLQ+QQ QQQ
Sbjct: 52 ISWHTKMEEAKALHQQHQHQQQ-QHQQHQQQLMLQQQQQQQQHF--LLLQQLQKQQQQQQ 222
Query: 549 QLQSLLQI------------PMNQLQQPRQ---------QQLPEPKNLPLPQQQLPQQLG 587
Q ++ + P+N Q P Q P +L QQQ Q
Sbjct: 223 QAAAISRFPSSIDAHLRPIRPINLQQNPNPNPNNPILNLHQNPNSNHLQQQQQQQQPQQQ 402
Query: 588 QQSQKAI 594
QQ QK +
Sbjct: 403 QQQQKMV 423
Score = 60.8 bits (146), Expect = 1e-09
Identities = 45/110 (40%), Positives = 53/110 (47%), Gaps = 7/110 (6%)
Frame = +1
Query: 493 QQQQQQQQQQQQQQQQLQLQHQQQQQQ-------LQQQQQQQQQQQLQQQQQQQLQQQQS 545
QQ Q QQQQ QQ QQQL LQ QQQQQQ LQ+QQQQQQQ + +
Sbjct: 94 QQHQHQQQQHQQHQQQLMLQQQQQQQQHFLLLQQLQKQQQQQQQAAAISRFPSSIDAHLR 273
Query: 546 QQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQQSQKAIM 595
+ + +L Q P P P + L QQQ QQ QQ Q+ M
Sbjct: 274 PIRPI-NLQQNPNPNPNNPILNLHQNPNSNHLQQQQQQQQPQQQQQQQKM 420
Score = 53.1 bits (126), Expect = 2e-07
Identities = 41/111 (36%), Positives = 46/111 (40%), Gaps = 41/111 (36%)
Frame = +1
Query: 481 INQLHQSPVSWPQQQQQQ---QQQQQQQQQQLQLQHQQQQQQLQQQ-------------- 523
++Q HQ QQ QQQ QQQQQQQQ L LQ Q+QQQ QQQ
Sbjct: 88 LHQQHQHQQQQHQQHQQQLMLQQQQQQQQHFLLLQQLQKQQQQQQQAAAISRFPSSIDAH 267
Query: 524 ------------------------QQQQQQQQLQQQQQQQLQQQQSQQQQL 550
Q LQQQQQQQ QQQ QQQ++
Sbjct: 268 LRPIRPINLQQNPNPNPNNPILNLHQNPNSNHLQQQQQQQQPQQQQQQQKM 420
Score = 46.2 bits (108), Expect = 3e-05
Identities = 35/96 (36%), Positives = 45/96 (46%)
Frame = +1
Query: 416 LVQWMSMQQNNQFSAAQSGCFPPMLSPNTLHSNLGTDDPSKLLSFQAPALSAPSLQFNKP 475
L+Q + QQ Q AA FP + + P + ++ Q Q P
Sbjct: 184 LLQQLQKQQQQQQQAAAISRFPSSIDAHLR--------PIRPINLQ---------QNPNP 312
Query: 476 NLPNQINQLHQSPVSWPQQQQQQQQQQQQQQQQLQL 511
N N I LHQ+P S QQQQQQQQ QQQQQQ ++
Sbjct: 313 NPNNPILNLHQNPNSNHLQQQQQQQQPQQQQQQQKM 420
Score = 36.2 bits (82), Expect = 0.030
Identities = 24/55 (43%), Positives = 27/55 (48%)
Frame = +1
Query: 703 LHLQLLQKLQQHQQHQQLLSTSSPLLQPQLLQQQSTPQQNQQLTQLPASQHQTQQ 757
LH Q + QQHQQHQQ L +LQQQ QQ+ L Q Q Q QQ
Sbjct: 88 LHQQHQHQQQQHQQHQQQL----------MLQQQQQQQQHFLLLQQLQKQQQQQQ 222
Score = 31.2 bits (69), Expect = 0.97
Identities = 31/121 (25%), Positives = 46/121 (37%), Gaps = 12/121 (9%)
Frame = +1
Query: 692 TMSQQTPSEQQLHLQLLQKLQQHQQ----HQQLLSTSSPLLQPQLLQQQSTPQQNQQLTQ 747
T ++ + Q H Q+ QQHQQ QQ LL QL +QQ QQ +++
Sbjct: 64 TKMEEAKALHQQHQHQQQQHQQHQQQLMLQQQQQQQQHFLLLQQLQKQQQQQQQAAAISR 243
Query: 748 LPAS--------QHQTQQLGNNAFSTEKVLNSNSFSSSLMQPHQLPVNHPQNTQKSLAIT 799
P+S + Q N +LN + +S Q PQ Q+ +
Sbjct: 244 FPSSIDAHLRPIRPINLQQNPNPNPNNPILNLHQNPNSNHLQQQQQQQQPQQQQQQQKMV 423
Query: 800 R 800
R
Sbjct: 424 R 426
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,161,903
Number of Sequences: 28460
Number of extensions: 289408
Number of successful extensions: 5537
Number of sequences better than 10.0: 220
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3333
length of query: 1142
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1042
effective length of database: 2,051,600
effective search space: 2137767200
effective search space used: 2137767200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0006.8