BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0005.13
(396 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), part... 33 0.063
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 33 0.11
TC11521 similar to UP|O23144 (O23144) Proton pump interactor (AT... 32 0.14
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 32 0.18
TC16643 similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein k... 32 0.24
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 32 0.24
TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, par... 31 0.31
TC8179 weakly similar to GB|AAC96325.1|4028592|AF104902 ZIC2 pro... 31 0.31
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin... 31 0.31
AW720211 31 0.41
AV427009 31 0.41
AV409919 30 0.54
BI417928 30 0.54
BP031101 30 0.54
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 30 0.70
TC15714 weakly similar to UP|Q9LU96 (Q9LU96) Genomic DNA, chromo... 30 0.70
CN825698 30 0.70
TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete 30 0.92
TC9459 similar to AAQ23982 (AAQ23982) Transcription factor Rap21... 30 0.92
BP078507 30 0.92
>TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), partial (76%)
Length = 1121
Score = 33.5 bits (75), Expect = 0.063
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 2/56 (3%)
Frame = +1
Query: 188 PEETPKPNQPGEPSLATPVSSPRAQDDSVD--KPPLSAKGFANREPPYSLSPTPAQ 241
P + PN P PS +T V++P D PP S + PPY S TPA+
Sbjct: 160 PNPSSPPNSPPSPSSST-VATPNPSDSHPPPPSPPPSPSATNSLNPPYPTSTTPAR 324
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 32.7 bits (73), Expect = 0.11
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 23/100 (23%)
Frame = +2
Query: 163 SPHPVAATSSSDGDRAPVISAAFCGPEETPKPNQPG----------EPSLATPVSSPRAQ 212
SP P +++ +P ++ P ++PKP+ P PS AT SSP A
Sbjct: 161 SPSPAPSSTLRAPSSSPASASPASSPTKSPKPSSPSASAPPSSTPLTPSTATSESSPTAT 340
Query: 213 DDSVDKPPLSAKGF-------------ANREPPYSLSPTP 239
S P F ++ PP S P+P
Sbjct: 341 SSSSSASPAPPTSFSALSRALELKALASSPSPPSSPPPSP 460
Score = 32.0 bits (71), Expect = 0.18
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +2
Query: 161 NVSPHPVAATSSSDGDRAPVISAAFCGPEETP-KPNQPGEPSLATPVSS----PRAQDDS 215
+ +P P + + S RAP S A P +P K +P PS + P SS P
Sbjct: 143 STTPKPSPSPAPSSTLRAPSSSPASASPASSPTKSPKPSSPSASAPPSSTPLTPSTATSE 322
Query: 216 VDKPPLSAKGFANREPPYSLS 236
S+ A+ PP S S
Sbjct: 323 SSPTATSSSSSASPAPPTSFS 385
>TC11521 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (21%)
Length = 1005
Score = 32.3 bits (72), Expect = 0.14
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Frame = +2
Query: 267 HAFHHYKRSAQDAEVLRSEVARLRALNAGFVEERKAFLAQLKAKETSFAKELAEQSSRAE 326
H+F + D +++++ +L + + R LKAK + A+ +++ S +
Sbjct: 407 HSFDLVRCRPYDDPTIKTKIDQLDKEISKINQGRFQITEALKAKRSDRAELISQIKSLRD 586
Query: 327 VSLEFR---DRKISDLE---KALGKLRQEAQEESEAKVDLVASKDQTLSSMETKLEHLRA 380
S +F+ D KI ++E +ALGKLR + + S + +++H
Sbjct: 587 NSRQFQSMVDEKIKEIEPLQQALGKLRTATNAGRGGLCSSEEELNDVIYSFQYRIQHESI 766
Query: 381 ELAKKDEAL 389
LA++ + L
Sbjct: 767 SLAEEKQIL 793
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 32.0 bits (71), Expect = 0.18
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 188 PEETPKPNQPGEPSLATPVSSPRAQDDSVDKPPLSAKGFANREPPYSLSPTPA 240
P ET P P S + SP + + PP +A A+ EP + P PA
Sbjct: 120 PPETSSPRNPSSTSPSRAPPSPHSTSNLSQSPPPAAPAAAHSEPE*TPPPPPA 278
>TC16643 similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein kinase-like
protein, partial (28%)
Length = 585
Score = 31.6 bits (70), Expect = 0.24
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 163 SPHPVAATSSSDGDRAPVISAAFCGPEETPKP--NQPGEPSLA-TPVSSPRAQDDSVDKP 219
S P AA+SSS P S+A P+P EP+L+ TP +P + + P
Sbjct: 44 SSPPSAASSSSRSSSPPPSSSASTANPPNPEPAATTRSEPALSETPTPAPPSPSSTPAGP 223
Query: 220 PLSAKGFANREPPYSLSPTPAQVA 243
G N P+ SP P + +
Sbjct: 224 -----GIPNSRSPWKNSPAPQKTS 280
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 31.6 bits (70), Expect = 0.24
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Frame = +1
Query: 163 SPHPVAATSSSDGDRAPVISAAFCGPE---ETPKPNQPGEPSLATPVSSPRAQDDSVDKP 219
SP + TSSS P AA G + P E +L P SS A S P
Sbjct: 238 SP*KGSTTSSSGAPTPPTPHAASPGASACRSSQNQTSPPETTLTPPTSSAPATSASSSPP 417
Query: 220 PLSAKGFANREPPYSLSPTP 239
K + PP LSP P
Sbjct: 418 HTLPKSPSPPPPPSPLSPPP 477
>TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, partial (40%)
Length = 784
Score = 31.2 bits (69), Expect = 0.31
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Frame = +1
Query: 190 ETPKPNQPGEP---SLATPVSSPRAQDDSVDKPPLSAKGFANREPPYSLSPTPAQVARM 245
+TP + PG+P S +TP +SP S D P SA PP + SP P + R+
Sbjct: 178 KTPSISCPGDPTPTSRSTPSASPTPSAASPDPPRKSA------TPPTASSPPPPKAGRV 336
>TC8179 weakly similar to GB|AAC96325.1|4028592|AF104902 ZIC2 protein {Homo
sapiens;} , partial (4%)
Length = 587
Score = 31.2 bits (69), Expect = 0.31
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 6/71 (8%)
Frame = -3
Query: 168 AATSSSDGDRAPVISAAFCGPEETPKPNQPGEPSLATPVSSPRAQDDSVDKPP---LSAK 224
A+T S+ +A +S++ TP+P+ P PSL P PR S+ K P S +
Sbjct: 357 ASTPSATSSKA--LSSSHKPDPPTPEPDPPPPPSLKKP*PKPRKPSRSIRKTPRLTFSKR 184
Query: 225 GFA---NREPP 232
F+ + EPP
Sbjct: 183 WFSIYRDSEPP 151
>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
(At5g24020), partial (45%)
Length = 470
Score = 31.2 bits (69), Expect = 0.31
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 190 ETPKPNQPGEPSLATPVSSPRAQDDSVDKPPLSAKGFANREPPYSLSPTPAQVAR 244
E PKP+ G S +P + PRA S PP+ A + PP SP+PA +R
Sbjct: 12 EQPKPSFNGTASRNSP-AKPRAWWSS---PPVKAASERPQPPPTWASPSPASASR 164
>AW720211
Length = 465
Score = 30.8 bits (68), Expect = 0.41
Identities = 17/38 (44%), Positives = 23/38 (59%)
Frame = +3
Query: 171 SSSDGDRAPVISAAFCGPEETPKPNQPGEPSLATPVSS 208
SSS+G+R S++ P TP P Q G P+ +TP SS
Sbjct: 249 SSSNGNRETWPSSSTSAP--TPSPTQSGAPAASTPPSS 356
>AV427009
Length = 404
Score = 30.8 bits (68), Expect = 0.41
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
Frame = +2
Query: 196 QPGEPSLA-TPVSSPRAQDDSVDKPPLSAKGFANREPPYSLSPTPAQVARMDEV 248
QP P+L TP SP +Q PP S + + P ++SPTP + D V
Sbjct: 98 QPLSPTLNFTPFLSPLSQPSIPPSPP*STLPTSTKAPALTVSPTPHLASAADAV 259
>AV409919
Length = 423
Score = 30.4 bits (67), Expect = 0.54
Identities = 22/71 (30%), Positives = 28/71 (38%), Gaps = 6/71 (8%)
Frame = +3
Query: 175 GDRAPVISAAFCGPEETPKPNQPGEPSLATPVSSPRAQDDSV------DKPPLSAKGFAN 228
GD +P +A+ + P P P +P SSP + S PPLS
Sbjct: 96 GDPSPPANASKPRTSKLPPPPLPSPTLYFSPSSSPSSTSSSTAGARRFGTPPLSTSSPPP 275
Query: 229 REPPYSLSPTP 239
R PP S S P
Sbjct: 276 RPPPSSPSSPP 308
Score = 26.6 bits (57), Expect = 7.8
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 1/42 (2%)
Frame = +3
Query: 198 GEPSLATPVSSPRAQDDSVDKPPLS-AKGFANREPPYSLSPT 238
G P L+T PR S PP S + ++ PP + SPT
Sbjct: 240 GTPPLSTSSPPPRPPPSSPSSPPPSTSSASSSAPPPTTTSPT 365
>BI417928
Length = 509
Score = 30.4 bits (67), Expect = 0.54
Identities = 22/76 (28%), Positives = 30/76 (38%)
Frame = +2
Query: 163 SPHPVAATSSSDGDRAPVISAAFCGPEETPKPNQPGEPSLATPVSSPRAQDDSVDKPPLS 222
+P P+ +SSS FC PKP P + AT V+SP + PP +
Sbjct: 233 TPPPLRLSSSSPWP-------PFCPTSPPPKPTTPPTTAKATTVASPLPTPPTTPSPPSA 391
Query: 223 AKGFANREPPYSLSPT 238
+ P LS T
Sbjct: 392 PSPPSTYGPSKPLSVT 439
>BP031101
Length = 472
Score = 30.4 bits (67), Expect = 0.54
Identities = 30/102 (29%), Positives = 46/102 (44%), Gaps = 1/102 (0%)
Frame = -2
Query: 108 VRQVIDPPEDSLTPEDKTVISFLARLPVLDCARVIEKIPQVSEGLLTVFEKKGNVSPHPV 167
+ QV D P +T +T++ L V +E++P + +V E VSP +
Sbjct: 441 LEQVTDSPFPVMTSISRTLVI*GPYLNVWPLMPALERVPPTVKYK*SVQET--GVSPCSM 268
Query: 168 AATSSSDGDRAPVISAAFCGPEETPKP-NQPGEPSLATPVSS 208
AA S+S +P SA +C P P P PSL +S+
Sbjct: 267 AARSTSIQSCSPPTSA*YCFPPPPPTVIPTPFPPSLNLAMST 142
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 30.0 bits (66), Expect = 0.70
Identities = 21/80 (26%), Positives = 29/80 (36%)
Frame = +2
Query: 163 SPHPVAATSSSDGDRAPVISAAFCGPEETPKPNQPGEPSLATPVSSPRAQDDSVDKPPLS 222
SP P + S R S+ P P P + S P S PP S
Sbjct: 389 SPSPKTTSRDSPPTRPSTTSSPAWSSASAPAPPPPSSSPSSASFSPPANSPTSSASPPPS 568
Query: 223 AKGFANREPPYSLSPTPAQV 242
A+ + R+P S SP+ +
Sbjct: 569 ARR-SRRDPSASRSPSSTTI 625
>TC15714 weakly similar to UP|Q9LU96 (Q9LU96) Genomic DNA, chromosome 3, P1
clone: MPE11, partial (26%)
Length = 1157
Score = 30.0 bits (66), Expect = 0.70
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +2
Query: 163 SPHPVAATSSSDGDRAPVIS---AAFCGPEET-PKPNQPGEPSLATPVS---SPRAQDDS 215
SP +ATSS AP AA P T P P+ P TPVS +PR++ S
Sbjct: 233 SPSTSSATSSFSATGAPRFDPNHAAASSPSSTAPPPSSSASPPSQTPVSPPPTPRSRTPS 412
Query: 216 -VDKPPLSA 223
+ PP S+
Sbjct: 413 LISAPPTSS 439
>CN825698
Length = 704
Score = 30.0 bits (66), Expect = 0.70
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +3
Query: 170 TSSSDGDRAPVISAAFCGPEET-PKPNQPGEPSLATPVSSPRAQDDSVDKPPLSAKGFAN 228
+SSS S F P T P+ Q G P + PR PP G
Sbjct: 141 SSSSSSSAVATSSLRFRSPSTTCPQEGQAGRPGFRSST*PPRLLRPQQQLPPAQRPGQGL 320
Query: 229 REPPYSLSPTPAQ 241
+ PP L+ P +
Sbjct: 321 QAPPQPLTSFPTR 359
>TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete
Length = 1950
Score = 29.6 bits (65), Expect = 0.92
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +3
Query: 168 AATSSSDGD--RAPVISAAFC--GPEETPKPNQPGEPSLATPVSSPRAQDDSVDKPPLSA 223
AATSS+ R P +A+ GP +P P P PS SSP + P LS
Sbjct: 402 AATSSASNTTLRPPTTTASSSTSGPSPSPLPESPAAPSPRGHNSSP-TSSTPLS*PALST 578
Query: 224 KGFANREPPYSLSPTP 239
+ P + P P
Sbjct: 579 RSSRTGSGPRTAGPAP 626
>TC9459 similar to AAQ23982 (AAQ23982) Transcription factor Rap212, partial
(12%)
Length = 434
Score = 29.6 bits (65), Expect = 0.92
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 196 QPGEPSLATPVSSPRAQDDSVDKPPLSAKGFANREPP 232
QP PS +P SSP + S PP S F +PP
Sbjct: 51 QPSPPSKNSPSSSPPSPTSSPAPPPPSPPPFQTTKPP 161
>BP078507
Length = 414
Score = 29.6 bits (65), Expect = 0.92
Identities = 22/74 (29%), Positives = 30/74 (39%)
Frame = -1
Query: 165 HPVAATSSSDGDRAPVISAAFCGPEETPKPNQPGEPSLATPVSSPRAQDDSVDKPPLSAK 224
HP T SS +P + PE P P +PS P S A + PP +
Sbjct: 363 HPTQDTPSSHT*SSPTDKQS--SPESYPTPLHSPQPSPNAPTSPYPAPSSQLRPPPST-- 196
Query: 225 GFANREPPYSLSPT 238
+++ PP L PT
Sbjct: 195 --SHQPPPTLLQPT 160
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,636,796
Number of Sequences: 28460
Number of extensions: 107628
Number of successful extensions: 802
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of query: 396
length of database: 4,897,600
effective HSP length: 92
effective length of query: 304
effective length of database: 2,279,280
effective search space: 692901120
effective search space used: 692901120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0005.13