TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0005.1
         (346 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17704 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (7%)             31  0.35
AV769356                                                               28  2.3
TC12778                                                                27  3.9
TC8002 similar to GB|AAA28385.1|156990|DROBCD segmentation prote...    27  3.9
TC15012                                                                27  5.0
TC8001 similar to UP|Q8LC02 (Q8LC02) Lil3 protein, partial (56%)       27  6.6
TC13769 weakly similar to GB|AAM19768.1|20453045|AY094388 AT3g56...    27  6.6
AU240108                                                               26  8.6

>TC17704 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (7%)
          Length = 283

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = +2

Query: 153 VQRQTLCAQATEASGVSTNDMGFSSSALIKG-------SGNLNEVSHKPALISEKPSAAM 205
           +  Q   + A  A  ++    G S+S L+          GN    +   + +SE+P   +
Sbjct: 5   IGHQQTGSAAAAAQSLAIGTPGISASPLLAEFSGPDGVHGNTFPPTSGKSTVSEQP---L 175

Query: 206 QRLIGVFTSMSSEALGASIGKIREVVHLNDAI 237
           +RLI    S++  AL A++  +  VV +ND I
Sbjct: 176 ERLIKAAKSLTPNALSAAVSDMGSVVSMNDRI 271


>AV769356 
          Length = 574

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 10/30 (33%), Positives = 15/30 (49%)
 Frame = +1

Query: 13  YQQICSKLRQHESSPHEPKTFNVEKFRGHK 42
           +  +CS    HE   H PK  N+  + GH+
Sbjct: 469 FSHLCSSFPCHEFKKHSPKAINIPFWCGHQ 558


>TC12778 
          Length = 462

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 13/45 (28%), Positives = 24/45 (52%)
 Frame = +1

Query: 80  HQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCL 124
           +  L+    +H+  +Q    VLP +LG Q+   A+QT++  +  L
Sbjct: 319 NSGLTYDASQHTNPLQGSFDVLPSILGHQDFSSAQQTAENRDTTL 453


>TC8002 similar to GB|AAA28385.1|156990|DROBCD segmentation protein PRD 4
           {Drosophila melanogaster;} , partial (50%)
          Length = 640

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 22/71 (30%), Positives = 33/71 (45%)
 Frame = -1

Query: 75  NSIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYG 134
           +S+ QH+    ++  H +   S    L  +LG QN H    T Q     LQ+QQ  KQ  
Sbjct: 547 SSLPQHRYQHPNRCCHFSGTASSPMCLQPILGPQN-HRESSTPQ-----LQQQQQMKQTH 386

Query: 135 NSEQGVNQLSI 145
            S+Q  +  +I
Sbjct: 385 LSQQRFSPAAI 353


>TC15012 
          Length = 1089

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 20/62 (32%), Positives = 28/62 (44%), Gaps = 10/62 (16%)
 Frame = -1

Query: 195 ALISEKPSAAMQRLIGVFTSMSSEALG----------ASIGKIREVVHLNDAIPAAKFID 244
           ALI+E PSA M+ L+    S+  ++L           A  GK    V L DA     F+ 
Sbjct: 282 ALINEAPSAVMRSLLRATPSLDGKSLKTKYATSNLPVALFGKWSREVSLFDATSCKAFLV 103

Query: 245 EP 246
           +P
Sbjct: 102 DP 97


>TC8001 similar to UP|Q8LC02 (Q8LC02) Lil3 protein, partial (56%)
          Length = 1039

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 22/71 (30%), Positives = 33/71 (45%)
 Frame = -3

Query: 75  NSIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYG 134
           +S+ QH+    ++  H +   S    L  +LG QN H    T Q     LQ+QQ  KQ  
Sbjct: 347 SSLPQHR*QHPNRCCHFSGTASSPMCLQPILGPQN-HRESSTPQ-----LQQQQQMKQTH 186

Query: 135 NSEQGVNQLSI 145
            S+Q  +  +I
Sbjct: 185 LSQQRFSPAAI 153


>TC13769 weakly similar to GB|AAM19768.1|20453045|AY094388
           AT3g56200/F18O21_160 {Arabidopsis thaliana;}, partial
           (20%)
          Length = 438

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 15/52 (28%), Positives = 25/52 (47%)
 Frame = +2

Query: 192 HKPALISEKPSAAMQRLIGVFTSMSSEALGASIGKIREVVHLNDAIPAAKFI 243
           H P L   KP+A    + G   ++++  +GA I  I  ++ +   IPA   I
Sbjct: 62  HVPLLPGSKPAAPPASVSGAVFNVANSIVGAGIMSIPALLKVLGVIPAFAMI 217


>AU240108 
          Length = 300

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 243 IDEPLEMAGQQNQPSRIPQGRKMARNINAMAFDTSRSCAR 282
           ID PL       +P+R+PQG    R    +     R C R
Sbjct: 97  IDNPLPSLRPCREPARVPQGCTHRRG*GCLRLRRQRCCHR 216


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,930,837
Number of Sequences: 28460
Number of extensions: 57019
Number of successful extensions: 360
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of query: 346
length of database: 4,897,600
effective HSP length: 91
effective length of query: 255
effective length of database: 2,307,740
effective search space: 588473700
effective search space used: 588473700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)