TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0004a.8
         (1041 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065920                                                              129  3e-30
AV778226                                                               58  7e-09
TC15191 weakly similar to BAD04853 (BAD04853) Cockayne syndrome ...    34  0.10
AI967639                                                               32  0.51
AV771914                                                               30  2.0
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla...    30  2.0
AV766700                                                               29  3.3
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ...    29  4.4
BP053203                                                               28  5.7
AW720377                                                               28  7.4
AV765948                                                               28  9.7
BP061997                                                               28  9.7
CN825229                                                               28  9.7

>BP065920 
          Length = 509

 Score =  129 bits (323), Expect = 3e-30
 Identities = 62/64 (96%), Positives = 64/64 (99%)
 Frame = -1

Query: 978  LTDFVGAINESWLFQCKFPDGMVEEIIASFASMPHTSSALALWLVKLDTIIAPYLDRVYL 1037
            LTDFVGAI+ESWLFQC+FPDGMVEEIIASFASMPHTSSALALWLVKLDTIIAPYLDRVYL
Sbjct: 509  LTDFVGAIHESWLFQCQFPDGMVEEIIASFASMPHTSSALALWLVKLDTIIAPYLDRVYL 330

Query: 1038 QKKQ 1041
            QKKQ
Sbjct: 329  QKKQ 318


>AV778226 
          Length = 523

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 42/146 (28%), Positives = 66/146 (44%), Gaps = 36/146 (24%)
 Frame = +2

Query: 289 LVKYPPDTVKMKKPIHLQPWDSSPELVKKLFK---------------------------- 320
           +V +PP +VK+KKP  +Q W +S + V  L                              
Sbjct: 47  MVCFPPTSVKLKKPFAVQAWSNSEQNVGNLLMAWRFLITFADVLELWPFTLDEFVQAFHD 226

Query: 321 -DSMLLGKIHVALLTLLLSDIEVEL---SNGFAPHLDKSCNFLALLHSVESQEYSPDF-- 374
            DS  LG++HVALL +++ DIE      S G   + + + N       +    Y+  F  
Sbjct: 227 YDSRWLGEVHVALLKVIIKDIEDVARTPSTGLGTNQNGAANPGGGHPEIVEGAYAWGFDI 406

Query: 375 --WRRSLNSLTWIEILRQVLVASGFG 398
             W+++LN  TW EI RQ+ +++GFG
Sbjct: 407 RNWQKNLNQWTWPEIFRQLALSAGFG 484


>TC15191 weakly similar to BAD04853 (BAD04853) Cockayne syndrome group B,
           partial (6%)
          Length = 618

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -3

Query: 456 LNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVTKDDDECQSDMEDYGSVD 513
           LN AS+ EE  SL C T+ +++ L        +  R++T   D DE  + +ED  SVD
Sbjct: 199 LNRASSLEETRSLKCCTMLAELELPPCCCRKVHI*RINTSGCDPDEFSAALEDLTSVD 26


>AI967639 
          Length = 335

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 21/68 (30%), Positives = 34/68 (49%)
 Frame = +1

Query: 498 DDDECQSDMEDYGSVDDELDDSDTCSCGDDFESGSVDSNIRKLKRVKSHKTKSAKLTVFN 557
           ++DE +   ++Y   D+E DD D     DD  S S DS+  K ++VK    ++ + T   
Sbjct: 106 EEDEEEDQGDEYNLEDEEEDDDDD---DDDDLSISEDSDSDKPRKVKQLPGRTRRETKRR 276

Query: 558 EIDESHPG 565
            +DE   G
Sbjct: 277 SVDEIQSG 300


>AV771914 
          Length = 416

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 522 CSCGDDFESGSVDSNIRKLKRVKSH 546
           C  G+   SGS+D N R LKR+ SH
Sbjct: 389 CLSGEGNASGSLDPNPRSLKRISSH 315


>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (40%)
          Length = 620

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 497 KDDDECQSDMEDYGSVDDELDDSDTCSCGDDFESGSVDSNIRKLKRVKSHKTKSAKLT 554
           ++DD    D ED  S D+E+DD+D+ S   D +    ++ ++K  + K     SA  T
Sbjct: 6   EEDDSDDEDDEDDDS-DEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALKT 176


>AV766700 
          Length = 365

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 224 NQSLKEKCELSLDSEISEEGVDRISMLIDDEELELRELQERTNLLICSDHLAASGMLGCS 283
           NQ+ K  CEL +  +ISE G   +         +L+ L +    L+ S H   SG   C 
Sbjct: 217 NQTQKRFCELDIFPQISEAGPQ*MMQ-------QLKTLSKLI*RLLSSTHCMKSGFKFCM 59

Query: 284 LGKDVLVKYP 293
                 +KYP
Sbjct: 58  *TLATCIKYP 29


>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
          Length = 1127

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 18/55 (32%), Positives = 27/55 (48%)
 Frame = -2

Query: 714 PGHKRVYFESSEDGHWEVIDTEEALCTLLSVLDDRGKREALLIESLERRQTSLCR 768
           P   R    S E G+W VI T  +LC  L+     G R  L+I ++E ++   C+
Sbjct: 214 PSGVRSTLASLESGNWTVI*TLSSLCAHLT----SG*RLELMIGTIEEKRRGWCK 62


>BP053203 
          Length = 530

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
 Frame = +2

Query: 652 HLNSHPCPVDSSSLMSKF-------RSHEPSFEKGKGSTDSHPIQSVYLGSDRRY 699
           H++  P P+ +S    K        RSH P+F  G  +T    +    LG + +Y
Sbjct: 305 HVSPSPIPIRASGSSVKSSLSGHNGRSHRPNFSSGTSNTYEDEVADRSLGEEHKY 469


>AW720377 
          Length = 597

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 15/57 (26%), Positives = 24/57 (41%), Gaps = 3/57 (5%)
 Frame = -2

Query: 879 LYWRDERHCKIC---HMTFELDFDLEERYAIHIATCREKENSKTHPNHKVLSSQIQS 932
           ++WR E+HC+ C   H+  E  +D E           EK +   +P     S  + S
Sbjct: 209 IWWRIEKHCRECRQKHVEEEDTYDYERYKGGKFGVTEEKNSDWQNPTRSSKSLYLNS 39


>AV765948 
          Length = 327

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +2

Query: 188 NRMLKNKLQNKRNNLQDKRKLLMQRK 213
           N+  KNKL+NK+++L+ ++K+L  R+
Sbjct: 89  NKEKKNKLKNKKSSLRVRKKMLNTRE 166


>BP061997 
          Length = 501

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 15/43 (34%), Positives = 26/43 (59%)
 Frame = +3

Query: 168 ISNSKKSVRENNRSSKTATMNRMLKNKLQNKRNNLQDKRKLLM 210
           I +SKK+ +EN+   +T T N M+K +   K + ++ KR  L+
Sbjct: 63  IQSSKKNYKENS*YKRTITNNTMVKGE-NKKESKIKGKRGKLV 188


>CN825229 
          Length = 641

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = -3

Query: 210 MQRKAGESNQHVTRNQSLKEKCELSLDSEISE 241
           +Q    E+NQH ++++SL   CE  L+ E  E
Sbjct: 486 LQAHQPEANQHQSQHRSLSHPCESHLEIECGE 391


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,189,042
Number of Sequences: 28460
Number of extensions: 256013
Number of successful extensions: 1328
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of query: 1041
length of database: 4,897,600
effective HSP length: 100
effective length of query: 941
effective length of database: 2,051,600
effective search space: 1930555600
effective search space used: 1930555600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)