TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0004a.6
         (418 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12710 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine cytidy...   122  3e-49
TC18690 similar to UP|P93470 (P93470) Cholinephosphate cytidylyl...   111  2e-25
AV427463                                                               27  8.2
TC15237 similar to UP|AAQ24632 (AAQ24632) GPRP, partial (64%)          27  8.2

>TC12710 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine
           cytidylyltransferase, partial (33%)
          Length = 515

 Score =  122 bits (305), Expect(2) = 3e-49
 Identities = 58/66 (87%), Positives = 62/66 (93%)
 Frame = +3

Query: 281 DFLLVGIHSDETVSEHRGNHYPIMHLHERSLSVLACRHVDEVIIGAPWEITKDMITTFNI 340
           DFLLVGIH+D TVSE RG H PIMHLHERSLSVLACR+VDEVIIGAPWE++KDMITTFNI
Sbjct: 6   DFLLVGIHTDHTVSETRGLHRPIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNI 185

Query: 341 SLVVHG 346
           SLVVHG
Sbjct: 186 SLVVHG 203



 Score = 90.5 bits (223), Expect(2) = 3e-49
 Identities = 42/78 (53%), Positives = 58/78 (73%), Gaps = 1/78 (1%)
 Frame = +1

Query: 342 LVVHGTVAEKSLHSER-DPYEVPKSMGMFRLLESPKDITTTTVAQRILANHEAYEKRNAK 400
           L +  T      H E+ +PY VP SMG+F++L+SP  ITTTT+ +RI++NHEAY+KR+ K
Sbjct: 193 LFMXTTAENNDFHKEQSNPYAVPISMGIFKILQSPLHITTTTIIRRIVSNHEAYQKRHEK 372

Query: 401 KSQSEKRYYEEKNYVSGD 418
           K +SEKRYYE K +V+GD
Sbjct: 373 KGESEKRYYESKTHVTGD 426



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 22/71 (30%), Positives = 39/71 (53%), Gaps = 2/71 (2%)
 Frame = +3

Query: 92  DELVVGLVNDEEILATKG--PPVLTMAERLALVSGLKWVDEVITDAPYAITEQFLHRLFH 149
           D L+VG+  D  +  T+G   P++ + ER   V   ++VDEVI  AP+ +++     +  
Sbjct: 6   DFLLVGIHTDHTVSETRGLHRPIMHLHERSLSVLACRYVDEVIIGAPWEVSKD----MIT 173

Query: 150 EYKIDYVIHGD 160
            + I  V+HG+
Sbjct: 174 TFNISLVVHGN 206


>TC18690 similar to UP|P93470 (P93470) Cholinephosphate cytidylyltransferase
           , partial (80%)
          Length = 845

 Score =  111 bits (278), Expect = 2e-25
 Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
 Frame = +2

Query: 63  RRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGLVNDEEILATKGPPVLTMAERLA 120
           R VRVY DG +DL H+GHA +L QAK       L+VG  NDE     KG  V+T AER  
Sbjct: 80  RPVRVYADGIYDLFHFGHAGSLEQAKKSFPNTYLLVGCCNDEVTHKYKGKTVMTEAERYE 259

Query: 121 LVSGLKWVDEVITDAPYAITEQFLHRLFHEYKIDYVIHGDDPCLLPDG--TDAYAAAKKA 178
            +   KWVDEVI DAP+ I ++FL +    ++IDYV H   P     G   D Y   K  
Sbjct: 260 SLRHCKWVDEVIPDAPWVINQEFLDK----HRIDYVAHDALPYADTSGAANDVYEFVKAV 427

Query: 179 GRYKQIKRTEGVSSTDIVGRIM 200
           G++K+ +RT+G+S++DI+ RI+
Sbjct: 428 GKFKETQRTDGISTSDIIMRIV 493



 Score = 85.5 bits (210), Expect = 1e-17
 Identities = 54/164 (32%), Positives = 85/164 (50%), Gaps = 7/164 (4%)
 Frame = +2

Query: 256 VYIDGAFDLFHAGHVEILKRAREL--GDFLLVGIHSDETVSEHRGNHYPIMHLHERSLSV 313
           VY DG +DLFH GH   L++A++     +LLVG  +DE   +++G    +M   ER  S+
Sbjct: 92  VYADGIYDLFHFGHAGSLEQAKKSFPNTYLLVGCCNDEVTHKYKGK--TVMTEAERYESL 265

Query: 314 LACRHVDEVIIGAPWEITKDMITTFNISLVVHGTVA-EKSLHSERDPYEVPKSMGMFRLL 372
             C+ VDEVI  APW I ++ +    I  V H  +    +  +  D YE  K++G F+  
Sbjct: 266 RHCKWVDEVIPDAPWVINQEFLDKHRIDYVAHDALPYADTSGAANDVYEFVKAVGKFKET 445

Query: 373 ESPKDITTTTVAQRILANHEAYEKRNAKKSQSEKR----YYEEK 412
           +    I+T+ +  RI+ ++  Y  RN  +  S K     Y +EK
Sbjct: 446 QRTDGISTSDIIMRIVKDYNQYVLRNLDRGYSRKELGVSYVKEK 577


>AV427463 
          Length = 417

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 326 APWEITKDMITTFNISLVVHGTVAEKSL 353
           +PW++T ++IT +N S        +KSL
Sbjct: 322 SPWKVTSELITVYNSS*ATRRASRKKSL 239


>TC15237 similar to UP|AAQ24632 (AAQ24632) GPRP, partial (64%)
          Length = 814

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 19/66 (28%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
 Frame = -3

Query: 56  HKKKSGKRRVRVYMDGCFDLM--HYGHANALRQAKALGDELVVGLVNDEEILATKGPPVL 113
           HK++  ++  +  +  C  ++  H+ H + + Q   LGD LVVG     + L   G  V+
Sbjct: 443 HKQQLQQQHPQQALHPCRHVLDAHHDHVHQMDQDNQLGDTLVVGDTQLGDTLVVGGTLVV 264

Query: 114 --TMAE 117
             T+AE
Sbjct: 263 GDTLAE 246


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,972,436
Number of Sequences: 28460
Number of extensions: 95462
Number of successful extensions: 452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of query: 418
length of database: 4,897,600
effective HSP length: 93
effective length of query: 325
effective length of database: 2,250,820
effective search space: 731516500
effective search space used: 731516500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)