TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0004a.3
         (148 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11289 weakly similar to UP|Q9LUE5 (Q9LUE5) Emb|CAB86483.1, par...    62  5e-11
TC11175 weakly similar to GB|AAL06796.1|15809736|AY054135 AT3g60...    60  2e-10
AW719590                                                               55  4e-09
BP037843                                                               32  0.059
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr...    29  0.29
BP072991                                                               29  0.38
TC12423 similar to PIR|T01558|T01558 auxin-induced protein homol...    28  0.50
TC17207                                                                27  1.5
BP085090                                                               27  1.5
TC19254 weakly similar to UP|Q94C33 (Q94C33) AT3g51180/F24M12_22...    27  1.9
TC9149 similar to UP|Q8LSK7 (Q8LSK7) Auxin-regulated protein, pa...    25  4.2
CB827758                                                               25  5.5
BP055291                                                               25  7.2
BP066384                                                               24  9.4
TC14433 similar to UP|Q41057 (Q41057) Cysteine protease , complete     24  9.4

>TC11289 weakly similar to UP|Q9LUE5 (Q9LUE5) Emb|CAB86483.1, partial (32%)
          Length = 765

 Score = 61.6 bits (148), Expect = 5e-11
 Identities = 26/63 (41%), Positives = 38/63 (60%)
 Frame = +2

Query: 40  PSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIV 99
           P GC  VYVG + QRF I   ++N P+F  LL+E E E+G    G ++LPC+V  F  ++
Sbjct: 305 PEGCFSVYVGQQMQRFVIKTEYVNHPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVL 484

Query: 100 KRL 102
             +
Sbjct: 485 MEM 493


>TC11175 weakly similar to GB|AAL06796.1|15809736|AY054135
           AT3g60690/T4C21_100 {Arabidopsis thaliana;}, partial
           (42%)
          Length = 692

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 33/87 (37%), Positives = 45/87 (50%), Gaps = 11/87 (12%)
 Frame = +1

Query: 27  ISLRRHDSS--------DPRPPSGCLYVYVGHER---QRFAIPARFLNLPVFAGLLDETE 75
           +++R H S         DP+ P G L VYVG E     R  +P  + N P+F  LL ETE
Sbjct: 79  LTVRHHGSGYAQLGSNLDPKVPKGHLPVYVGEEDGELHRLLVPVIYFNHPLFGELLKETE 258

Query: 76  EEFGLRGSGGLILPCDVCFFTHIVKRL 102
           +EFG    GG+ +PC V  F  +  R+
Sbjct: 259 DEFGFHHPGGITIPCRVTEFERVKTRI 339


>AW719590 
          Length = 496

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +2

Query: 21  MMRWKQISLRRHDSSDPRPPSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEFGL 80
           ++R    S  +  S     P G L VYVG E +RF IP  +LN P F  LL + EEEFG 
Sbjct: 86  LIRRASFSTTQASSKGFEVPKGHLAVYVGDEMRRFVIPVSYLNQPSFQELLYQAEEEFGY 265

Query: 81  -RGSGGLILPCDVCFFTHIVKR 101
              +GGL +PC    F +++ +
Sbjct: 266 DHPTGGLKIPCREDDFLNLISQ 331


>BP037843 
          Length = 443

 Score = 31.6 bits (70), Expect = 0.059
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 70  LLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNENKY 109
           LL++  EEFG   SG L +PC++  F +++  +     ++
Sbjct: 436 LLEKAAEEFGFDHSGALTIPCEIETFKYLLNCMENTHQQH 317


>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
           complete
          Length = 880

 Score = 29.3 bits (64), Expect = 0.29
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = -3

Query: 19  QVMMRWKQISLRRHDSSDPRPPSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEF 78
           +V   ++ I    H SS P P       Y+ +  + +  P + L  PV+A  +   ++  
Sbjct: 350 EVFYHYRIIIYLLHQSSFPHPSHPSNRNYLAYRTRFYQTPHQLLFTPVYAH*ISVVQQ-- 177

Query: 79  GLRGSGGLILPC 90
             +G   LI+PC
Sbjct: 176 --KGISSLIIPC 147


>BP072991 
          Length = 411

 Score = 28.9 bits (63), Expect = 0.38
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 3   GAMKKVDK---IRQIVRLKQVMMRWKQISLRRHDSSDPRPPSGCLYVYVGHERQRFAIPA 59
           GA+K       +  I++++++ +++ Q+S      +         YVY GH  QRF I  
Sbjct: 189 GALKYTSNQIIVEPILKIRRLFIKYTQLSKTLGSKTSQSAIFTLSYVYQGHRGQRFVIIF 368

Query: 60  RFL 62
            F+
Sbjct: 369 HFI 377


>TC12423 similar to PIR|T01558|T01558 auxin-induced protein homolog
           A_TM018A10.6 - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (43%)
          Length = 317

 Score = 28.5 bits (62), Expect = 0.50
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 61  FLNLPVFAGLLDETEEEFGL 80
           ++N P+F  LL E EEEFGL
Sbjct: 205 YINHPLFMHLLKEAEEEFGL 264


>TC17207 
          Length = 751

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 13/36 (36%), Positives = 18/36 (49%)
 Frame = +3

Query: 88  LPCDVCFFTHIVKRLHKNENKYGKLTLEQFVITFSD 123
           L C  C  T++ K LHKN    G   +   ++ FSD
Sbjct: 432 LKCPSCV-TNLFKPLHKNSRHLGTFEVR*IILNFSD 536


>BP085090 
          Length = 278

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (49%)
 Frame = -2

Query: 70  LLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNENKYGKLT 113
           LL++  +EFG     G ++ C V  F  +V  +  N   +G LT
Sbjct: 187 LLEKAYDEFGFEPRNGRVVLCSVSAFQEVVDAIECN---HGSLT 65


>TC19254 weakly similar to UP|Q94C33 (Q94C33) AT3g51180/F24M12_220, partial
           (4%)
          Length = 502

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 34  SSDPRPPSGCLYVYVGHERQRFAIP 58
           +SDPRPP+ C++V    E + F IP
Sbjct: 278 TSDPRPPAKCIFV---AELETFNIP 213


>TC9149 similar to UP|Q8LSK7 (Q8LSK7) Auxin-regulated protein, partial
           (35%)
          Length = 602

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 15/21 (70%)
 Frame = -1

Query: 57  IPARFLNLPVFAGLLDETEEE 77
           + A   +LP+F G ++ETEEE
Sbjct: 374 VVAAVFSLPLFGGRVEETEEE 312


>CB827758 
          Length = 485

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 83  SGGLILPCDVCFF 95
           +G L+L CDVCFF
Sbjct: 101 TGMLLLSCDVCFF 63


>BP055291 
          Length = 496

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 83  SGGLILPCDVCFFTHIVKRLHKNENKYGKL 112
           SGG  +   +CF   I+  + KN+ KY K+
Sbjct: 114 SGGPKVLLSLCFM*PILNTMLKNDKKYSKI 203


>BP066384 
          Length = 430

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 34 SSDPRPPSGCLYVYVGHERQR 54
          SS P PP  C+Y    H+RQR
Sbjct: 87 SSPPPPPPRCIYT---HKRQR 34


>TC14433 similar to UP|Q41057 (Q41057) Cysteine protease , complete
          Length = 1392

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 21/68 (30%), Positives = 30/68 (43%), Gaps = 5/68 (7%)
 Frame = +2

Query: 22  MRWKQISLRRHDSSDPRPPSGCLYVYVGHER-QRFAIPARFLNLPVFAGLLDETEEEFGL 80
           +RW  +SLRR D    R P   ++  +   R  R ++    L+ P  A L D   +   L
Sbjct: 101 LRWCSVSLRRQDRPASRTPIQFVWSQIWRSRFFR*SVKLAMLS-PSHASLPDTASDTIPL 277

Query: 81  R----GSG 84
           R    GSG
Sbjct: 278 RRFSIGSG 301


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,622,282
Number of Sequences: 28460
Number of extensions: 33959
Number of successful extensions: 233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of query: 148
length of database: 4,897,600
effective HSP length: 82
effective length of query: 66
effective length of database: 2,563,880
effective search space: 169216080
effective search space used: 169216080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)