BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590a.3
(270 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204008 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chloroph... 514 e-146
TC214059 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding... 360 e-100
TC203298 UP|CB23_SOYBN (P09756) Chlorophyll a-b binding protein ... 352 1e-97
TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 352 1e-97
TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, com... 350 5e-97
TC214292 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding... 348 2e-96
TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 317 4e-87
TC203621 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 315 2e-86
TC203746 UP|CB22_SOYBN (P09755) Chlorophyll a-b binding protein ... 270 1e-85
TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 308 2e-84
TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I c... 273 8e-74
TC204043 similar to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 258 2e-69
TC203280 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 254 3e-68
CD395422 221 3e-58
BE803860 similar to GP|506629|gb|A photosystem II type I chlorop... 220 6e-58
TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 219 8e-58
TC204034 similar to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 219 1e-57
TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 215 2e-56
BF068121 similar to GP|506629|gb|A photosystem II type I chlorop... 206 1e-53
TC205999 weakly similar to UP|CB21_LEMGI (P12328) Chlorophyll a-... 203 6e-53
>TC204008 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1220
Score = 514 bits (1325), Expect = e-146
Identities = 251/270 (92%), Positives = 261/270 (95%)
Frame = +1
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MAATLMAATT SSGT +K +PFLGQ KG+N+N LRDVVSMGTGKYTMGNDLWYGPDRVKY
Sbjct: 139 MAATLMAATT-SSGT-LKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKY 312
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV
Sbjct: 313 LGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 492
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
LEKW+RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RI
Sbjct: 493 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI 672
Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
NGL GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 673 NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 852
Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPGS 270
KGPLENLLDHLD+PVANNAWVYATKF PGS
Sbjct: 853 KGPLENLLDHLDNPVANNAWVYATKFSPGS 942
>TC214059 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II precursor, complete
Length = 1079
Score = 360 bits (924), Expect = e-100
Identities = 189/275 (68%), Positives = 210/275 (75%), Gaps = 9/275 (3%)
Frame = +2
Query: 4 TLMAATTASSGTVIKPSPFLGQTKGSNSNT-LRDVVSMGTGKYTMGN-------DLWYGP 55
T++ AT+A I+ S F GQT N +R G G+ M +WYGP
Sbjct: 98 TIIMATSA-----IQQSAFTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGP 262
Query: 56 DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGC 115
DR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC
Sbjct: 263 DRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGC 442
Query: 116 ITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLV 175
PE+LEK V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG V
Sbjct: 443 TFPEILEK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFV 619
Query: 176 EGFRINGLPGVGEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV 234
EG+R+ G P +GEG + +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFV
Sbjct: 620 EGYRVGGGP-LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV 793
Query: 235 QAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
QAIVTGKGP++NL DH+ DPVANNAW YAT FVPG
Sbjct: 794 QAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPG 898
>TC203298 UP|CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3,
chloroplast precursor (LHCII type I CAB-3) (LHCP),
complete
Length = 1518
Score = 352 bits (903), Expect = 1e-97
Identities = 185/270 (68%), Positives = 206/270 (75%), Gaps = 2/270 (0%)
Frame = +2
Query: 2 AATLMAATTAS-SGTVIKPSPFLGQT-KGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
AA+ MA ++ S +G +K P + + S T+ VS G+ WYGPDRVK
Sbjct: 527 AASSMALSSPSLAGKAVKLGPSAPEVGRVSMRKTVTKQVSSGSP--------WYGPDRVK 682
Query: 60 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 683 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 862
Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
+L + V F E VWFKAGSQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+R
Sbjct: 863 LLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR 1039
Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
I G P + +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 1040IAGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 1216
Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
GKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 1217GKGPLENLADHLADPVNNNAWAYATNFVPG 1306
>TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (92%)
Length = 916
Score = 352 bits (902), Expect = 1e-97
Identities = 180/250 (72%), Positives = 195/250 (78%)
Frame = +3
Query: 20 SPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGD 79
+P LG + S T VS G+ WYGPDRVKYLGPFS + PSYLTGEFPGD
Sbjct: 15 TPQLGVGRVSMRKTASKTVSSGSP--------WYGPDRVKYLGPFSGEPPSYLTGEFPGD 170
Query: 80 YGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGS 139
YGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGS
Sbjct: 171 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGS 347
Query: 140 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYF 199
QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P + +YPGG F
Sbjct: 348 QIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-F 524
Query: 200 DPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNA 259
DPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNA
Sbjct: 525 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 704
Query: 260 WVYATKFVPG 269
W YAT FVPG
Sbjct: 705 WAYATNFVPG 734
>TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, complete
Length = 1427
Score = 350 bits (897), Expect = 5e-97
Identities = 183/269 (68%), Positives = 204/269 (75%), Gaps = 1/269 (0%)
Frame = +1
Query: 2 AATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
AA+ MA ++ S +G +K P + ++R V+ K WYGPDRVKY
Sbjct: 436 AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVT----KQASSGSPWYGPDRVKY 594
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 595 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 774
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
L + V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 775 LSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 951
Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
G P + +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 952 AGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 1128
Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPG 269
KGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 1129KGPLENLADHLADPVNNNAWAYATNFVPG 1215
>TC214292 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II precursor, complete
Length = 1686
Score = 348 bits (892), Expect = 2e-96
Identities = 172/218 (78%), Positives = 187/218 (84%), Gaps = 1/218 (0%)
Frame = +2
Query: 53 YGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA 112
YGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA
Sbjct: 782 YGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 961
Query: 113 LGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLM 172
LGC PE+LEK V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LM
Sbjct: 962 LGCTFPEILEK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLM 1138
Query: 173 GLVEGFRINGLPGVGEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFG 231
G VEG+R+ G P +GEG + +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFG
Sbjct: 1139GFVEGYRVGGGP-LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 1312
Query: 232 FFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
FFVQAIVTGKGP++NL DH+ DPVANNAW YAT FVPG
Sbjct: 1313FFVQAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPG 1426
>TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (77%)
Length = 739
Score = 317 bits (812), Expect = 4e-87
Identities = 158/203 (77%), Positives = 170/203 (82%)
Frame = +3
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
+ PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 3 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NG 179
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P
Sbjct: 180 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLG 359
Query: 187 GEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 246
+ +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 360 EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 536
Query: 247 LLDHLDDPVANNAWVYATKFVPG 269
L DHL DPV NNAW YAT FVPG
Sbjct: 537 LADHLADPVNNNAWAYATNFVPG 605
>TC203621 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (89%)
Length = 780
Score = 315 bits (806), Expect = 2e-86
Identities = 172/273 (63%), Positives = 190/273 (69%), Gaps = 4/273 (1%)
Frame = +1
Query: 1 MAATLMAATTAS-SGTVIK---PSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPD 56
MAA+ MA +++S +G IK +P LG + S T VS G+ WYGPD
Sbjct: 73 MAASTMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTASKTVSSGSP--------WYGPD 228
Query: 57 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI 116
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+
Sbjct: 229 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 408
Query: 117 TPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVE 176
PE+L + V F E VWFKAGSQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VE
Sbjct: 409 FPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWANQVILMGAVE 585
Query: 177 GFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQA 236
G+RI AELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 586 GYRI-------------------------------AELKVKELKNGRLAMFSMFGFFVQA 672
Query: 237 IVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
IVTGKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 673 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 771
>TC203746 UP|CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2,
chloroplast precursor (LHCII type I CAB-2) (LHCP),
complete
Length = 887
Score = 270 bits (689), Expect(2) = 1e-85
Identities = 138/182 (75%), Positives = 149/182 (81%)
Frame = +2
Query: 86 GLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEG 145
GLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGSQIFSEG
Sbjct: 221 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEG 397
Query: 146 GLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLA 205
GLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P + +YPGG FDPLGLA
Sbjct: 398 GLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLA 574
Query: 206 DDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATK 265
DDP AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW YAT
Sbjct: 575 DDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 754
Query: 266 FV 267
FV
Sbjct: 755 FV 760
Score = 64.7 bits (156), Expect(2) = 1e-85
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 MAATLMAATTAS-SGTVIK---PSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPD 56
MAA+ MA +++S +G +K +P LG + S T VS G+ WYGPD
Sbjct: 1 MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSP--------WYGPD 156
Query: 57 RVKYLGPFSAQTPSYLTGEFP 77
RVKYLGPFS + PSYLTGEFP
Sbjct: 157RVKYLGPFSGEAPSYLTGEFP 219
>TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (74%)
Length = 777
Score = 308 bits (789), Expect = 2e-84
Identities = 154/197 (78%), Positives = 165/197 (83%)
Frame = +3
Query: 73 TGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEP 132
TGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 3 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEA 179
Query: 133 VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNL 192
VWFKAGSQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P + +
Sbjct: 180 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 359
Query: 193 YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD 252
YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL
Sbjct: 360 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 536
Query: 253 DPVANNAWVYATKFVPG 269
DPV NNAW YAT FVPG
Sbjct: 537 DPVNNNAWAYATNFVPG 587
>TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I chlorophyll
a/b-binding protein precursor, partial (69%)
Length = 908
Score = 273 bits (697), Expect = 8e-74
Identities = 139/182 (76%), Positives = 150/182 (82%)
Frame = +2
Query: 88 SADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGL 147
SADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGSQIFSEGGL
Sbjct: 230 SADPETFARNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGL 406
Query: 148 DYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADD 207
DYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P + +YPGG FDPLGLADD
Sbjct: 407 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLADD 583
Query: 208 PATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFV 267
P FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW YAT FV
Sbjct: 584 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV 763
Query: 268 PG 269
PG
Sbjct: 764 PG 769
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = +2
Query: 62 GPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
GP T P Y G F D GL+ DPEAFA+ + E+ +GR AM G
Sbjct: 512 GPLGEVTDPIYPGGSF------DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 655
>TC204043 similar to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, partial (62%)
Length = 707
Score = 258 bits (660), Expect = 2e-69
Identities = 132/173 (76%), Positives = 144/173 (82%)
Frame = +3
Query: 83 DTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIF 142
D+ +ADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW+RVDFKEPVWFKAG+QIF
Sbjct: 189 DSNRSAADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 368
Query: 143 SEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPL 202
SEGGLDY GNPNL HA SIL VLGFQV+LMGLVEG+RINGL GVGEGN+L+P GQYF L
Sbjct: 369 SEGGLDYSGNPNLDHAHSILTVLGFQVILMGLVEGYRINGLDGVGEGNDLFPEGQYFYSL 548
Query: 203 GLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 255
LA DP T A +V EIK G LAM M GFFV+AIVT KG L NLL L++ V
Sbjct: 549 SLAYDPFTLAGHQV*EIKTGWLAMLYMSGFFVRAIVTEKGTLANLLHRLNNRV 707
>TC203280 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (64%)
Length = 1094
Score = 254 bits (649), Expect = 3e-68
Identities = 132/190 (69%), Positives = 148/190 (77%), Gaps = 1/190 (0%)
Frame = +2
Query: 81 GWDTAGLSADPEAFAKNRA-LEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGS 139
G D +S +P ++ LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGS
Sbjct: 383 GLDCTPVSENPSCRIRHEGELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGS 559
Query: 140 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYF 199
QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P + +YPGG F
Sbjct: 560 QIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-F 736
Query: 200 DPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNA 259
+PLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNA
Sbjct: 737 NPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 916
Query: 260 WVYATKFVPG 269
W YAT FVPG
Sbjct: 917 WAYATNFVPG 946
>CD395422
Length = 658
Score = 221 bits (563), Expect = 3e-58
Identities = 112/143 (78%), Positives = 119/143 (82%)
Frame = -1
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P
Sbjct: 571 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 392
Query: 187 GEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 246
+ +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 391 EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 215
Query: 247 LLDHLDDPVANNAWVYATKFVPG 269
L DHL DPV NNAW YAT FVPG
Sbjct: 214 LADHLADPVNNNAWAYATNFVPG 146
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = -1
Query: 62 GPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
GP T P Y G F D GL+ DPEAFA+ + E+ +GR AM G
Sbjct: 403 GPLGEVTDPIYPGGSF------DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 260
>BE803860 similar to GP|506629|gb|A photosystem II type I chlorophyll
a/b-binding protein {Glycine max}, partial (67%)
Length = 544
Score = 220 bits (560), Expect = 6e-58
Identities = 115/179 (64%), Positives = 133/179 (74%)
Frame = +2
Query: 77 PGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFK 136
P DY WDTAGLSADPE FA NR LEVIH RWAMLG+LGC+ PE+L + V F++ WFK
Sbjct: 2 PCDYRWDTAGLSADPETFA*NRELEVIHSRWAMLGSLGCVFPELLSR-NGVKFRKTRWFK 178
Query: 137 AGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGG 196
AGS IFSEGGLDYLGNP+L+HAQSILA+ Q++L G VEG+RI G P + + +YPGG
Sbjct: 179 AGSHIFSEGGLDYLGNPSLIHAQSILAIWATQIILKGAVEGYRIAGGPLCEDTDPIYPGG 358
Query: 197 QYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 255
PLGLADDP AE KV E++ GRLAMFSM GFFV A+VTGKG L L L DPV
Sbjct: 359 S-LHPLGLADDPDAIAEQKVNELQTGRLAMFSMSGFFVHALVTGKGTL*ILC*SLADPV 532
>TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (53%)
Length = 1569
Score = 219 bits (559), Expect = 8e-58
Identities = 110/141 (78%), Positives = 118/141 (83%)
Frame = +3
Query: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGE 188
F E VWFKAGSQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P
Sbjct: 543 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 722
Query: 189 GNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 248
+ +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 723 TDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 899
Query: 249 DHLDDPVANNAWVYATKFVPG 269
DHL DPV NNAW YAT FVPG
Sbjct: 900 DHLADPVNNNAWAYATNFVPG 962
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = +3
Query: 62 GPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
GP T P Y G F D GL+ DPEAFA+ + E+ +GR AM G
Sbjct: 705 GPLGEVTDPIYPGGSF------DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 848
>TC204034 similar to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, partial (47%)
Length = 934
Score = 219 bits (558), Expect = 1e-57
Identities = 109/144 (75%), Positives = 123/144 (84%)
Frame = +2
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MAATLMAAT SSGT +K +PFLGQ KG+N+N LRDVVSMGTGKYTMGNDLW GPD++KY
Sbjct: 440 MAATLMAAT--SSGT-LKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWNGPDKMKY 610
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPF+AQTP+YL G+FP DYGWDTAG SADPEAFAKNRA+EVIHG WAMLGALGCI PE
Sbjct: 611 LGPFAAQTPTYLKGKFP*DYGWDTAG*SADPEAFAKNRAVEVIHGTWAMLGALGCIIPEG 790
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSE 144
L+KW+RVDF PV + +QI E
Sbjct: 791 LDKWLRVDFVRPVKIRYITQIIVE 862
Score = 44.7 bits (104), Expect = 5e-05
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Frame = -2
Query: 189 GNNLYPGGQYFDPLGLA---------DDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
G YPGG++FDPL LA D LK+ EIK+ R+AM +M F+ +A
Sbjct: 360 GEQGYPGGKFFDPLSLAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA-GQ 184
Query: 240 GKGPL 244
GK PL
Sbjct: 183 GKTPL 169
>TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (52%)
Length = 1448
Score = 215 bits (547), Expect = 2e-56
Identities = 107/136 (78%), Positives = 115/136 (83%)
Frame = +2
Query: 134 WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLY 193
WFKAGSQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P + +Y
Sbjct: 905 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIY 1084
Query: 194 PGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDD 253
PGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL D
Sbjct: 1085 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 1261
Query: 254 PVANNAWVYATKFVPG 269
PV NNAW YAT FVPG
Sbjct: 1262 PVNNNAWAYATNFVPG 1309
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = +2
Query: 62 GPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
GP T P Y G F D GL+ DPEAFA+ + E+ +GR AM G
Sbjct: 1052 GPLGEVTDPIYPGGSF------DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 1195
>BF068121 similar to GP|506629|gb|A photosystem II type I chlorophyll
a/b-binding protein {Glycine max}, partial (64%)
Length = 541
Score = 206 bits (523), Expect = 1e-53
Identities = 107/177 (60%), Positives = 127/177 (71%), Gaps = 3/177 (1%)
Frame = +2
Query: 52 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 111
W GP+RVKYLGPFS SYLTGEFPGDYGWDT GL+ D + FA+NR L+VIH RWAMLG
Sbjct: 17 WCGPNRVKYLGPFSGDPASYLTGEFPGDYGWDTGGLTVDQQTFARNRELKVIHSRWAMLG 196
Query: 112 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLL 171
ALGC+ PE+L + V E VWFKAGS IFSEGGLDYL NP+LVHAQSIL++ QV+L
Sbjct: 197 ALGCVLPELLSR-NGVKLGEAVWFKAGSHIFSEGGLDYLSNPSLVHAQSILSIWATQVML 373
Query: 172 MGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKV---KEIKNGRLA 225
MG V+G+RI G V E +DP GLADDP FAE V KE+++G ++
Sbjct: 374 MGAVDGYRIAG-GRVWEVTVAIYHCCSYDPFGLADDPRAFAES*VK*TKELESGHVS 541
>TC205999 weakly similar to UP|CB21_LEMGI (P12328) Chlorophyll a-b binding
protein of LHCII type I, chloroplast precursor (CAB)
(LHCP), partial (49%)
Length = 1265
Score = 203 bits (517), Expect = 6e-53
Identities = 106/215 (49%), Positives = 134/215 (62%), Gaps = 8/215 (3%)
Frame = +3
Query: 52 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 111
WYG DR ++LGP S + PSYLTGE PGDYG+D AGL DP A K E++H RWAML
Sbjct: 351 WYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLA 530
Query: 112 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA--QSILAVLGFQV 169
++G + PE+L+ F EPVW++ G LDYLG L A Q ++ + Q
Sbjct: 531 SVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQA 710
Query: 170 LLMGLVEGFRINGLPGVG------EGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGR 223
LLM E R G+ + G+ YPGG FDPL L++DP F ELKVKEIKNGR
Sbjct: 711 LLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGR 890
Query: 224 LAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
LAM + GF+VQA +TGKGP++NL+DH+ DP NN
Sbjct: 891 LAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNN 995
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,598,183
Number of Sequences: 63676
Number of extensions: 133100
Number of successful extensions: 1018
Number of sequences better than 10.0: 244
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of query: 270
length of database: 12,639,632
effective HSP length: 96
effective length of query: 174
effective length of database: 6,526,736
effective search space: 1135652064
effective search space used: 1135652064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0590a.3