BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0588b.3
(432 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chlor... 208 4e-54
TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-bindi... 168 4e-42
TC222410 similar to UP|Q84M99 (Q84M99) At2g03200, partial (58%) 163 1e-40
TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_4... 151 6e-37
TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast ... 150 1e-36
TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast... 145 4e-35
TC215510 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.1... 135 5e-32
TC233713 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A... 119 2e-27
TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A... 116 2e-26
TC204568 similar to UP|Q9FL43 (Q9FL43) Nucleoid DNA-binding-like... 115 5e-26
TC230136 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-bindi... 109 3e-24
TC217139 weakly similar to UP|Q6K6I0 (Q6K6I0) Nucellin-like aspa... 109 3e-24
TC215511 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.1... 105 4e-23
BM093602 99 7e-22
CK606426 89 3e-18
BI468893 77 1e-14
TC204572 similar to UP|Q8L934 (Q8L934) Nucleoid DNA-binding-like... 75 7e-14
TC210695 similar to GB|AAL91289.1|19699359|AY090445 At1g79720/F1... 75 7e-14
TC209245 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A... 74 2e-13
TC217140 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At... 72 4e-13
>TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
nucleoid DNA binding protein-like {Arabidopsis
thaliana;} , partial (67%)
Length = 2013
Score = 208 bits (529), Expect = 4e-54
Identities = 126/364 (34%), Positives = 184/364 (49%), Gaps = 7/364 (1%)
Frame = +2
Query: 73 PFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSS 132
P S+ +G+Y ++ +G P Y ++DTGSD+ W QC PC CY+Q P+F+P +S
Sbjct: 554 PVSSGTAQGSGEYFSRVGVGQPSKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPIFDPTAS 733
Query: 133 KTFNPIPCDSEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELV 192
++NP+ CD++QC L +C K C Y SY D S T G ET++F + +
Sbjct: 734 SSYNPLTCDAQQCQDLEMSACRNGK-CLYQVSYGDGSFTVGEYVTETVSFGAGS------ 892
Query: 193 VGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTS 252
V + GCGH N G F G++GLGGGPLSL SQ+ A FS CLV DS S
Sbjct: 893 VNRVAIGCGHDNEGLF-VGSAGLLGLGGGPLSLTSQIKA----TSFSYCLV--DRDSGKS 1051
Query: 253 GTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSFN----SSEKLSKGN 308
T+ F S G+ VV L +++ T Y V L G+SVG V+ + ++ G
Sbjct: 1052STLEFN--SPRPGDSVVAPLLKNQKVNTFYYVELTGVSVGGEIVTVPPETFAVDQSGAGG 1225
Query: 309 MMIDSGTPATYLPQEFYDRLVEELKVQ-SSLLPVDNDPDLGTQLCYRSETNLEGPILTAH 367
+++DSGT T L + Y+ + + K + S+L P + T S ++ P ++ H
Sbjct: 1226VIVDSGTAITRLRTQAYNSVRDAFKRKTSNLRPAEGVALFDTCYDLSSLQSVRVPTVSFH 1405
Query: 368 FEGADVQLMPIQTFIPPKD--GVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKTISFK 425
F G +P + ++ P D G +CFA A T I GN Q + FDL + F
Sbjct: 1406FSGDRAWALPAKNYLIPVDGAGTYCFAFAPTTSSMSIIGNVQQQGTRVSFDLANSLVGFS 1585
Query: 426 PTDC 429
P C
Sbjct: 1586PNKC 1597
>TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
cnd41-like protein, partial (54%)
Length = 985
Score = 168 bits (426), Expect = 4e-42
Identities = 101/265 (38%), Positives = 142/265 (53%), Gaps = 5/265 (1%)
Frame = +1
Query: 69 APNGPFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFE 128
A GP + + +G+Y +++ +G PP Y ++DTGSD+ W QC+PC CY+Q P+F+
Sbjct: 187 ALQGPVVSGTSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWIQCAPCSECYQQSDPIFD 366
Query: 129 PLSSKTFNPIPCDSEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNG 188
P+SS +++PI CD+ QC SL C C Y SY D S T G A ET+T +
Sbjct: 367 PISSNSYSPIRCDAPQCKSLDLSECR-NGTCLYEVSYGDGSYTVGEFATETVTLGT---- 531
Query: 189 DELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHAD 248
V ++ GCGH+N G F G++GLGGG LS +Q+ A FS CLV
Sbjct: 532 --AAVENVAIGCGHNNEGLF-VGAAGLLGLGGGKLSFPAQVNA----TSFSYCLV----- 675
Query: 249 SRTSGTISFGDASDVSGEGVVTTPL-VSEEGQTPYLVTLEGISVGDTFVSFNSS----EK 303
+R S +S + + VVT PL + E T Y + L+GISVG + S +
Sbjct: 676 NRDSDAVSTLEFNSPLPRNVVTAPLRRNPELDTFYYLGLKGISVGGEALPIPESIFEVDA 855
Query: 304 LSKGNMMIDSGTPATYLPQEFYDRL 328
+ G ++IDSGT T L E YD L
Sbjct: 856 IGGGGIIIDSGTAVTRLRSEVYDAL 930
>TC222410 similar to UP|Q84M99 (Q84M99) At2g03200, partial (58%)
Length = 1087
Score = 163 bits (413), Expect = 1e-40
Identities = 123/342 (35%), Positives = 169/342 (48%), Gaps = 13/342 (3%)
Frame = +1
Query: 101 LVDTGSDLVWAQCSPCHGCYKQKSPMF---EPLSSKTFNPIPCDSEQCGSLFSHSCSPQK 157
++DTGSDL+ S + P PL F+ + + C L H+
Sbjct: 19 VLDTGSDLI*HSASLARSVINNQHPFLIPRSPLLFPRFHVVAACAVLC--LLQHAVMGVS 192
Query: 158 LCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIG 217
+ ++ + KGVLA ET TF N ++ V +I FGCG N G E G++G
Sbjct: 193 MFIHTVTIQ*H---KGVLATETFTFGKSKN--KVSVHNIGFGCGEDNEGDGFEQASGLVG 357
Query: 218 LGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDV-SGEGVVTTPLVSE 276
LG GPLSLVSQ+ RFS CL P D + G V + VVTTPL+
Sbjct: 358 LGRGPLSLVSQL----KEPRFSYCLTPM--DDTKESILLLGSLGKVKDAKEVVTTPLLKN 519
Query: 277 EGQTP-YLVTLEGISVGDTFVSFNSSE----KLSKGNMMIDSGTPATYLPQEFYDRLVEE 331
Q Y ++LEGISVGDT +S S G ++IDSGT TY+ Q+ ++ L +E
Sbjct: 520 PLQPSFYYLSLEGISVGDTRLSIEKSTFEVGDDGNGGVIIDSGTTITYIEQKAFEALKKE 699
Query: 332 LKVQSSLLPVDNDPDLGTQLCY---RSETNLEGPILTAHFEGADVQLMPIQTFIPPKD-G 387
+ + LP+D G LC+ T +E P + HF+G D++L I + G
Sbjct: 700 F-ISQTKLPLDKTSSTGLDLCFSLPSGSTQVEIPKIVFHFKGGDLELPAENYMIGDSNLG 876
Query: 388 VFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDC 429
V C AM G + G IFGN Q NIL+ DL+++TISF PT C
Sbjct: 877 VACLAM-GASSGMSIFGNVQQQNILVNHDLEKETISFVPTSC 999
>TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_40, partial
(76%)
Length = 1447
Score = 151 bits (381), Expect = 6e-37
Identities = 118/361 (32%), Positives = 167/361 (45%), Gaps = 13/361 (3%)
Frame = +3
Query: 82 NGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPC-HGCYKQKSPMFEPLSSKTFNPIPC 140
+G+Y + + LG+P D+ + DTGSDL W QC PC CYKQ+ +F+P S +++ I C
Sbjct: 99 SGNYFVVVGLGTPKRDLSLIFDTGSDLTWTQCEPCARSCYKQQDVIFDPSKSTSYSNITC 278
Query: 141 DSEQCGSLFSHS-----CSPQ-KLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVG 194
S C L + + CS K C Y Y DSS + G +RE +T ++ VV
Sbjct: 279 TSALCTQLSTATGNDPGCSASTKACIYGIQYGDSSFSVGYFSRERLTVTATD-----VVD 443
Query: 195 DIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGT 254
+ +FGCG +N G F G+IGLG P+S V Q A Y + FS CL + S ++G
Sbjct: 444 NFLFGCGQNNQGLFG-GSAGLIGLGRHPISFVQQTAAKY-RKIFSYCL---PSTSSSTGH 608
Query: 255 ISFGDASDVSGEGVVTTPLVS-EEGQTPYLVTLEGISVGDTFVSFNSSEKLSKGNMMIDS 313
+SFG A+ +G + TP + G + Y + + I+VG + +SS S G +IDS
Sbjct: 609 LSFGPAA--TGRYLKYTPFSTISRGSSFYGLDITAIAVGGVKLPVSSS-TFSTGGAIIDS 779
Query: 314 GTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNLEGPILTAHFE---G 370
GT T LP Y L + S P + + CY I T F G
Sbjct: 780 GTVITRLPPTAYGALRSAFRQGMSKYPSAGELSI-LDTCYDLSGYKVFSIPTIEFSFAGG 956
Query: 371 ADVQLMPIQTFIPPKDGVFCFAMAGTADGD--YIFGNFAQSNILIGFDLDRKTISFKPTD 428
V+L P C A A D I+GN Q I + +D+ I F
Sbjct: 957 VTVKLPPQGILFVASTKQVCLAFAANGDDSDVTIYGNVQQRTIEVVYDVGGGRIGFGAGG 1136
Query: 429 C 429
C
Sbjct: 1137C 1139
>TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast nucleoid DNA
binding protein (CND41), partial (69%)
Length = 1808
Score = 150 bits (379), Expect = 1e-36
Identities = 120/365 (32%), Positives = 169/365 (45%), Gaps = 17/365 (4%)
Frame = +3
Query: 82 NGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPC-HGCYKQKSPMFEPLSSKTFNPIPC 140
+G+Y + + LG+P D+ + DTGSDL W QC PC CYKQ+ +F+P S +++ I C
Sbjct: 435 SGNYFVVVGLGTPKRDLSLIFDTGSDLTWTQCEPCARSCYKQQDAIFDPSKSTSYSNITC 614
Query: 141 DSEQCGSLFSHS-----CSPQ-KLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVG 194
S C L + + CS K C Y Y DSS + G +RE ++ ++ +V
Sbjct: 615 TSTLCTQLSTATGNEPGCSASTKACIYGIQYGDSSFSVGYFSRERLSVTATD-----IVD 779
Query: 195 DIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGT 254
+ +FGCG +N G F G+IGLG P+S V Q A+Y + FS CL A S ++G
Sbjct: 780 NFLFGCGQNNQGLFG-GSAGLIGLGRHPISFVQQTAAVY-RKIFSYCL---PATSSSTGR 944
Query: 255 ISFGDASDVSGEGVVTTPLVS-EEGQTPYLVTLEGISVGDTFVSFNSSEKLSKGNMMIDS 313
+SFG + V TP + G + Y + + GISVG + +SS S G +IDS
Sbjct: 945 LSFGTTTT---SYVKYTPFSTISRGSSFYGLDITGISVGGAKLPVSSS-TFSTGGAIIDS 1112
Query: 314 GTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNLEG------PILTAH 367
GT T LP Y L + S P + + CY +L G P +
Sbjct: 1113GTVITRLPPTAYTALRSAFRQGMSKYPSAGELSI-LDTCY----DLSGYEVFSIPKIDFS 1277
Query: 368 FE-GADVQLMPIQTFIPPKDGVFCFAMAGTADGD--YIFGNFAQSNILIGFDLDRKTISF 424
F G VQL P C A A D I+GN Q I + +D+ I F
Sbjct: 1278FAGGVTVQLPPQGILYVASAKQVCLAFAANGDDSDVTIYGNVQQKTIEVVYDVGGGRIGF 1457
Query: 425 KPTDC 429
C
Sbjct: 1458GAGGC 1472
>TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast nucleoid
DNA binding protein precursor, partial (52%)
Length = 1348
Score = 145 bits (365), Expect = 4e-35
Identities = 94/264 (35%), Positives = 136/264 (50%), Gaps = 6/264 (2%)
Frame = +1
Query: 71 NGPFSTRVTS--NNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHG-CYKQKSPMF 127
N P+S + + DY + + LG+P D+ DTGS L W QC PC G CYKQ+ P+F
Sbjct: 391 NYPYSAKSGRLIGSADYYVVVGLGTPKRDLSLTFDTGSYLTWTQCEPCAGSCYKQQDPIF 570
Query: 128 EPLSSKTFNPIPCDSEQCGSLFSHSC--SPQKLCAYSYSYADSSVTKGVLARETITFSSP 185
+P S ++ I C S C S C S C Y Y D+S+++G L++E +T ++
Sbjct: 571 DPSKSSSYTNIKCTSSLCTQFRSAGCSSSTDASCIYDVKYGDNSISRGFLSQERLTITAT 750
Query: 186 TNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPF 245
+V D +FGCG N G F G++GL P+S V Q ++Y ++ FS CL
Sbjct: 751 D-----IVHDFLFGCGQDNEGLF-RGTAGLMGLSRHPISFVQQTSSIY-NKIFSYCL--- 900
Query: 246 HADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQTP-YLVTLEGISVGDTFVSFNSSEKL 304
+ + G ++FG AS + + TP + G+ Y + + GISVG T + SS
Sbjct: 901 PSTPSSLGHLTFG-ASAATNANLKYTPFSTISGENSFYGLDIVGISVGGTKLPAVSSSTF 1077
Query: 305 SKGNMMIDSGTPATYLPQEFYDRL 328
S G +IDSGT T LP Y L
Sbjct: 1078SAGGSIIDSGTVITRLPPTAYAAL 1149
>TC215510 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.13
{Arabidopsis thaliana;} , partial (68%)
Length = 1381
Score = 135 bits (339), Expect = 5e-32
Identities = 110/356 (30%), Positives = 171/356 (47%), Gaps = 12/356 (3%)
Frame = +3
Query: 73 PFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSS 132
P ++ T N G+Y++++ LG+P ++ ++DT +D + CS C GC F P +S
Sbjct: 21 PIASGQTFNIGNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGC---SDTTFSPKAS 191
Query: 133 KTFNPIPCDSEQCGSLFSHSC--SPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDE 190
++ P+ C QCG + SC + C+++ SYA SS + L ++++ ++
Sbjct: 192 TSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQSYAGSSFS-ATLVQDSLRLATD----- 353
Query: 191 LVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSR 250
V+ + FGC ++ +GA + G++GLG GPLSL+SQ G+ Y S FS CL P
Sbjct: 354 -VIPNYSFGCVNAITGA-SVPAQGLLGLGRGPLSLLSQSGSNY-SGIFSYCL-PSFKSYY 521
Query: 251 TSGTISFGDASDVSGEGVVTTPLV-SEEGQTPYLVTLEGISVGDTFVSFNSS----EKLS 305
SG++ G + + TTPL+ S + Y V GISVG V F S +
Sbjct: 522 FSGSLKLGPVG--QPKSIRTTPLLRSPHRPSLYYVNFTGISVGRVLVPFPSEYLGFNPNT 695
Query: 306 KGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNLEGPILT 365
+IDSGT T + Y+ + EE + Q + T C+ P +T
Sbjct: 696 GSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTTFTSIGAFDT--CFVKTYETLAPPIT 869
Query: 366 AHFEGADVQLMPIQTFIPPKDG-VFCFAMAGTADGD----YIFGNFAQSNILIGFD 416
HFEG D++L + I G + C AMA D + NF Q N+ I FD
Sbjct: 870 LHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFD 1037
>TC233713 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;} , partial (33%)
Length = 516
Score = 119 bits (299), Expect = 2e-27
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Frame = +1
Query: 78 VTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNP 137
+ +G+Y ++ +G+P +Y ++DTGSD+VW QC+PC CY Q P+F+P S+T+
Sbjct: 64 LAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYTQADPVFDPTKSRTYAG 243
Query: 138 IPCDSEQCGSLFSHSC-SPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDI 196
IPC + C L S C + K+C Y SY D S T G + ET+TF V +
Sbjct: 244 IPCGAPLCRRLDSPGCNNKNKVCQYQVSYGDGSFTFGDFSTETLTFRRTR------VTRV 405
Query: 197 IFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFS 239
GCGH N G F G++GLG G LS Q G RRF+
Sbjct: 406 ALGCGHDNEGLF-IGAAGLLGLGRGRLSFPVQTG-----RRFN 516
>TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;} , partial (38%)
Length = 840
Score = 116 bits (290), Expect = 2e-26
Identities = 65/155 (41%), Positives = 84/155 (53%), Gaps = 5/155 (3%)
Frame = +3
Query: 74 FSTRVTSN----NGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEP 129
FS+ V S +G+Y +L +G+PP +Y ++DTGSD+VW QC PC CY Q +F+P
Sbjct: 396 FSSSVVSGLSQGSGEYFTRLGVGTPPKYLYIVLDTGSDVVWLQCKPCTKCYSQTDQIFDP 575
Query: 130 LSSKTFNPIPCDSEQCGSLFSHSCSPQ-KLCAYSYSYADSSVTKGVLARETITFSSPTNG 188
SKTF IPC S C L S C+ + LC Y SY D S T + ET+TF
Sbjct: 576 SKSKTFAGIPCSSPLCRRLDSPGCNTKNNLCQYQVSYGDGSFTVREFSIETLTFR----- 740
Query: 189 DELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPL 223
V + GCGH N G F G++GLG G L
Sbjct: 741 -RAEVPRVALGCGHDNEGLF-VGAAGLLGLGRGGL 839
>TC204568 similar to UP|Q9FL43 (Q9FL43) Nucleoid DNA-binding-like protein,
partial (88%)
Length = 1307
Score = 115 bits (287), Expect = 5e-26
Identities = 123/439 (28%), Positives = 187/439 (42%), Gaps = 33/439 (7%)
Frame = +2
Query: 12 FLVVLY-LLSCQTP-IEAQDAGFSVQLTRQNSPHSPFYKP---------------DNLHR 54
FL +L+ L+ TP + QD G ++++ SP SPF P D
Sbjct: 53 FLFLLFSLVEGLTPKCDTQDHGSTLEVFHVFSPCSPFRPPKPLSWAESVLQLQAKDQARL 232
Query: 55 HKLPSFHQVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCS 114
L S V ++ P S R + Y+++ +GSPP + +DT +D W C+
Sbjct: 233 QFLASM--VAGRSVVPIA--SGRQIIQSPTYIVRAKIGSPPQTLLLAMDTSNDAAWIPCT 400
Query: 115 PCHGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGV 174
C GC S +F P S TF + C S QC + + SC C ++ +Y SS+ V
Sbjct: 401 ACDGC---TSTLFAPEKSTTFKNVSCGSPQCNQVPNPSCG-TSACTFNLTYGSSSIAANV 568
Query: 175 LARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYG 234
+ ++T+T ++ + D FGC +GA + G++GLG GPLSL+SQ LY
Sbjct: 569 V-QDTVTLATDP------IPDYTFGCVAKTTGA-SAPPQGLLGLGRGPLSLLSQTQNLYQ 724
Query: 235 SRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQTP-YLVTLEGISVGD 293
S FS CL P SG++ G + + TPL+ ++ Y V L I VG
Sbjct: 725 S-TFSYCL-PSFKSLNFSGSLRLGPVAQPI--RIKYTPLLKNPRRSSLYYVNLVAIRVGR 892
Query: 294 TFV-------SFNSSEKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPD 346
V +FN++ + + DSGT T L Y + +E + + ++ N
Sbjct: 893 KVVDIPPEALAFNAA---TGAGTVFDSGTVFTRLVAPAYTAVRDEFQRRVAIAAKANLTV 1063
Query: 347 L---GTQLCYRSETNLEGPILTAHFEGADVQLMPIQTFIPPKDG-VFCFAMAGTADGD-- 400
G CY + P +T F G +V L I G C AMA D
Sbjct: 1064TSLGGFDTCY--TVPIVAPTITFMFSGMNVTLPEDNILIHSTAGSTTCLAMASAPDNVNS 1237
Query: 401 --YIFGNFAQSNILIGFDL 417
+ N Q N + +D+
Sbjct: 1238VLNVIANMQQQNHRVLYDV 1294
>TC230136 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
cnd41-like protein, partial (47%)
Length = 1077
Score = 109 bits (272), Expect = 3e-24
Identities = 90/271 (33%), Positives = 125/271 (45%), Gaps = 10/271 (3%)
Frame = +2
Query: 169 SVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQ 228
S T G A ET+T S V ++ GCGH+N G F G++GLGGG LS +Q
Sbjct: 2 SYTVGEFATETVTLGSAA------VENVAIGCGHNNEGLF-VGAAGLLGLGGGKLSFPAQ 160
Query: 229 MGALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTTPLV-SEEGQTPYLVTLE 287
+ A FS CLV +R S +S + + T PL+ + E T Y + L+
Sbjct: 161 VNAT----SFSYCLV-----NRDSDAVSTLEFNSPLPRNAATAPLMRNPELDTFYYLGLK 313
Query: 288 GISVGDTFVSFNSS----EKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDN 343
GISVG + S + + G ++IDSGT T L E YD L + + +P N
Sbjct: 314 GISVGGEALPIPESSFEVDAIGGGGIIIDSGTAVTRLRSEVYDALRDAFVXGAKGIPKAN 493
Query: 344 DPDLGTQLCY--RSETNLEGPILTAHF-EGADVQLMPIQTFIPPKD--GVFCFAMAGTAD 398
L CY S ++E P ++ F EG ++ L P ++ P D G FCFA A T
Sbjct: 494 GVSL-FDTCYDLSSRESVEIPTVSFRFPEGRELPL-PASNYLIPVDSVGTFCFAFAPTTS 667
Query: 399 GDYIFGNFAQSNILIGFDLDRKTISFKPTDC 429
I GN Q +GFD+ + F C
Sbjct: 668 SLSIIGNVQQQGTRVGFDIANSLVGFSVDSC 760
>TC217139 weakly similar to UP|Q6K6I0 (Q6K6I0) Nucellin-like aspartic
protease-like, partial (61%)
Length = 967
Score = 109 bits (272), Expect = 3e-24
Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 20/316 (6%)
Frame = +1
Query: 91 LGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKS-----PMFEPLSSKTFNPIPCDSEQC 145
+G+PP + Y VDTGSD++W C C C + + +++ S + +PCD E C
Sbjct: 1 IGTPPKNYYLQVDTGSDIMWVNCIQCKECPTRSNLGMDLTLYDIKESSSGKFVPCDQEFC 180
Query: 146 ----GSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGD---ELVVGDIIF 198
G L + C+ C Y Y D S T G ++ + + +GD + G I+F
Sbjct: 181 KEINGGLLT-GCTANISCPYLEIYGDGSSTAGYFVKDIVLYDQ-VSGDLKTDSANGSIVF 354
Query: 199 GCGHSNSGAFNENDM----GVIGLGGGPLSLVSQMGALYGSRR-FSQCLVPFHADSRTSG 253
GCG SG + ++ G++G G S++SQ+ + ++ F+ CL + G
Sbjct: 355 GCGARQSGDLSSSNEEALGGILGFGKANSSMISQLASSGKVKKMFAHCLNGVNG----GG 522
Query: 254 TISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSF--NSSEKLSKGNMMI 311
+ G V V TPL+ + Q Y V + + VG F+S ++S + + +I
Sbjct: 523 IFAIG---HVVQPKVNMTPLLPD--QPHYSVNMTAVQVGHAFLSLSTDTSTQGDRKGTII 687
Query: 312 DSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNLEGPILTAHFE-G 370
DSGT YLP+ Y+ LV ++ Q L V D T Y + P +T +FE G
Sbjct: 688 DSGTTLAYLPEGIYEPLVYKIISQHPDLKVQTLHDEYTCFQYSESVDDGFPAVTFYFENG 867
Query: 371 ADVQLMPIQTFIPPKD 386
+++ P P D
Sbjct: 868 LSLKVYPHDYLFPSGD 915
>TC215511 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.13
{Arabidopsis thaliana;} , partial (58%)
Length = 1220
Score = 105 bits (262), Expect = 4e-23
Identities = 95/315 (30%), Positives = 142/315 (44%), Gaps = 12/315 (3%)
Frame = +2
Query: 127 FEPLSSKTFNPIPCDSEQCGSLFSHSC--SPQKLCAYSYSYADSSVTKGVLARETITFSS 184
F P +S ++ P+ C QCG + SC + C+++ SYA SS + L ++ + ++
Sbjct: 11 FSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQSYAGSSFS-ATLVQDALRLAT 187
Query: 185 PTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVP 244
V+ FGC ++ +GA + G++GLG GPLSL+SQ G+ Y S FS CL P
Sbjct: 188 D------VIPYYSFGCVNAITGA-SVPAQGLLGLGRGPLSLLSQSGSNY-SGIFSYCL-P 340
Query: 245 FHADSRTSGTISFGDASDVSGEGVVTTPLV-SEEGQTPYLVTLEGISVGDTFVSFNSS-- 301
SG++ G + + TTPL+ S + Y V GISVG V F S
Sbjct: 341 SFKSYYFSGSLKLGPVG--QPKSIRTTPLLRSPHRPSLYYVNFTGISVGRVLVPFPSEYL 514
Query: 302 --EKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNL 359
+ +IDSGT T + Y+ + EE + Q + T C+
Sbjct: 515 GFNPNTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTTFTSIGAFDT--CFVKTYET 688
Query: 360 EGPILTAHFEGADVQLMPIQTFIPPKDG-VFCFAMAGTADGD----YIFGNFAQSNILIG 414
P +T HFEG D++L + I G + C AMA D + NF Q N+ I
Sbjct: 689 LAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRIL 868
Query: 415 FDLDRKTISFKPTDC 429
FD+ + C
Sbjct: 869 FDIVNNKVGIAREVC 913
>BM093602
Length = 416
Score = 99.0 bits (245), Expect(2) = 7e-22
Identities = 45/110 (40%), Positives = 62/110 (55%)
Frame = +1
Query: 99 YGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSHSCSPQKL 158
Y ++D+GSD++W QC PC CY Q P+F P S +F+ + C S C + + +C +
Sbjct: 100 YVVMDSGSDIIWVQCEPCTQCYHQSDPVFNPADSSSFSGVSCASTVCSHVDNAACHEGR- 276
Query: 159 CAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAF 208
C Y SY D S TKG LA ETITF ++ ++ GCGH N G F
Sbjct: 277 CRYEVSYGDGSYTKGTLALETITFG------RTLIRNVAIGCGHHNQGMF 408
Score = 23.1 bits (48), Expect(2) = 7e-22
Identities = 7/19 (36%), Positives = 14/19 (72%)
Frame = +3
Query: 82 NGDYLMKLTLGSPPVDIYG 100
+G+Y +++ +GSPP + G
Sbjct: 51 SGEYFVRIGVGSPPKPVRG 107
>CK606426
Length = 829
Score = 89.4 bits (220), Expect = 3e-18
Identities = 84/255 (32%), Positives = 121/255 (46%), Gaps = 18/255 (7%)
Frame = +1
Query: 159 CAYSYSYADSSVTKGVLARETIT--FSSPTNGDELV-VGDIIFGCGHSNSGAFNENDMGV 215
C Y Y Y D S T G A ET T ++P EL V +++FGCGH N G F+ G+
Sbjct: 22 CPYFYWYGDGSNTTGDFALETFTVNLTTPNGKSELKHVENVMFGCGHWNRGLFH-GAAGL 198
Query: 216 IGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVV--TTPL 273
+GLG GPLS SQM +LYG + FS CLV ++++ S + FG+ ++ + T+
Sbjct: 199 LGLGKGPLSFASQMQSLYG-QSFSYCLVDRNSNASVSSKLIFGEDKELLSHPNLNFTSFG 375
Query: 274 VSEEGQ--TPYLVTLEGISVGDTFVSFN------SSEKLSKGNMMIDSGTPATYLPQEFY 325
++G T Y V + + V D + SSE G +IDSGT TY + Y
Sbjct: 376 GGKDGSVGTFYYVQINSVMVDDEVLKIPEETWHLSSE--GAGGTIIDSGTTLTYFAEPAY 549
Query: 326 DRLVEEL--KVQSSLLPVDNDPDLGTQLCYRSE--TNLEGPILTAHFEGADVQLMPIQT- 380
+ + E K++ L V+ P L + CY +E P F V P++
Sbjct: 550 EIIKEAFVRKIKGYEL-VEGLPPL--KPCYNVSGIEKMELPDFGILFADGAVWNFPVENY 720
Query: 381 FIPPKDGVFCFAMAG 395
FI V C A+ G
Sbjct: 721 FIQIDPDVVCLAILG 765
>BI468893
Length = 422
Score = 77.4 bits (189), Expect = 1e-14
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Frame = +1
Query: 119 CYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSHS-----CS-PQKLCAYSYSYADSSVTK 172
C+ Q P+F P SKT+ + C S QC SL S + CS C Y SY D+S +
Sbjct: 10 CHVQVDPIFTPSVSKTYKALSCSSSQCSSLKSSTLNAPGCSNATGACVYKASYGDTSFSI 189
Query: 173 GVLARETITF---SSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQM 229
G L+++ +T ++P++G ++GCG N G F + G+IGL LS++ Q+
Sbjct: 190 GYLSQDVLTLTPSAAPSSG-------FVYGCGQDNQGLFGRS-AGIIGLANDKLSMLGQL 345
Query: 230 GALYGSRRFSQCL 242
YG+ FS CL
Sbjct: 346 SNKYGN-AFSYCL 381
>TC204572 similar to UP|Q8L934 (Q8L934) Nucleoid DNA-binding-like protein,
partial (61%)
Length = 1118
Score = 74.7 bits (182), Expect = 7e-14
Identities = 84/303 (27%), Positives = 132/303 (42%), Gaps = 14/303 (4%)
Frame = +3
Query: 142 SEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCG 201
+ QC + + +C CA++++Y SSV L ++T+T ++ V FGC
Sbjct: 6 ASQCKQVRNPTCDGSA-CAFNFTYGTSSVAAS-LVQDTVTLATDP------VPAYAFGCI 161
Query: 202 HSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDAS 261
+G+ + G++GLG GPLSL++Q LY S FS CL P SG++ G +
Sbjct: 162 QKVTGS-SVPPQGLLGLGRGPLSLLAQTQKLYQS-TFSYCL-PSFKTLNFSGSLRLGPVA 332
Query: 262 DVSGEGVVTTPLVSEEGQTP-YLVTLEGISVGDTFV-------SFNSSEKLSKGNMMIDS 313
+ + TPL+ ++ Y V L I VG V +FN++ + + DS
Sbjct: 333 --QPKRIKFTPLLKNPRRSSLYYVNLVAIRVGRRIVDIPPEALAFNAN---TGAGTVFDS 497
Query: 314 GTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDL-GTQLCYRSETNLEGPILTAHFEGAD 372
GT T L + Y+ + E + + ++ L G CY + + P +T F G +
Sbjct: 498 GTVFTRLVEPAYNAVRNEFRRRIAVHKKLTVTSLGGFDTCYTAP--IVAPTITFMFSGMN 671
Query: 373 VQLMPIQTFIPPKDG-VFCFAMAGTADGD----YIFGNFAQSNILIGFDLDRKTISFKPT 427
V L P I G V C AMA D + N Q N + FD+ +
Sbjct: 672 VTLPPDNILIHSTAGSVTCLAMAPAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVARE 851
Query: 428 DCT 430
CT
Sbjct: 852 LCT 860
>TC210695 similar to GB|AAL91289.1|19699359|AY090445 At1g79720/F19K16_30
{Arabidopsis thaliana;} , partial (37%)
Length = 1041
Score = 74.7 bits (182), Expect = 7e-14
Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 10/248 (4%)
Frame = +3
Query: 193 VGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTS 252
V + +FGCG +N G F G++GLG LS++SQ A +G FS CL P + S
Sbjct: 39 VSNFVFGCGRNNKGLFG-GASGLMGLGRSELSMISQTNATFGG-VFSYCL-PSTDQAGAS 209
Query: 253 GTISFGDASDVSGEG---VVTTPLVSEEGQTPYLVTLEGISVGDTFVSFNSSEKLSKGNM 309
G++ G+ S V T L + + Y++ L GI VG + +S G +
Sbjct: 210 GSLVMGNQSGVFKNVTPIAYTRMLPNLQLSNFYILNLTGIDVGGVSLHVQAS-SFGNGGV 386
Query: 310 MIDSGTPATYLPQEFYDRLVEELKVQSSLLP-VDNDPDLGTQLCYRSETNLEGPILTAHF 368
++DSGT + L Y L + Q S P L T + P ++ +F
Sbjct: 387 ILDSGTVISRLAPSVYKALKAKFLEQFSGFPSAPGFSILDTCFNLTGYDQVNIPTISMYF 566
Query: 369 EG-ADVQLMPIQTFIPPKDGV--FCFAMAGTADGDY---IFGNFAQSNILIGFDLDRKTI 422
EG A++ + F K+ C A+A +D +Y I GN+ Q N + +D +
Sbjct: 567 EGNAELNVDATGIFYLVKEDASRVCLALASLSD-EYEMGIIGNYQQRNQRVLYDAKLSQV 743
Query: 423 SFKPTDCT 430
F CT
Sbjct: 744 GFAKEPCT 767
>TC209245 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;} , partial (32%)
Length = 856
Score = 73.6 bits (179), Expect = 2e-13
Identities = 55/156 (35%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Frame = +2
Query: 282 YLVTLEGISVGDTFVSFNSS-----EKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQS 336
Y V L G SVG V S+ + G ++IDSGT T L + Y L + +V +
Sbjct: 53 YYVELLGFSVGGAPVRGISASLFRLDSTGNGGVIIDSGTSVTRLTRPGYVALRDAFRVGA 232
Query: 337 SLLPVDNDPDLGTQLCYRSE--TNLEGPILTAHFEGADVQLMPIQTFIP-PKDGVFCFAM 393
S L ++ L CY + ++ P + HF GADV L IP DG FCFA
Sbjct: 233 SHLKRASEFSL-FDTCYDLSGLSEVKVPTVVLHFRGADVSLPASNYLIPVDNDGTFCFAF 409
Query: 394 AGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDC 429
AGT G I GN Q + FDL + F P C
Sbjct: 410 AGTMSGLSIVGNIQQQGFRVVFDLAGSRVGFAPRGC 517
>TC217140 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At2g17760
{Arabidopsis thaliana;} , partial (47%)
Length = 1383
Score = 72.4 bits (176), Expect = 4e-13
Identities = 91/356 (25%), Positives = 145/356 (40%), Gaps = 21/356 (5%)
Frame = +2
Query: 95 PVDIYGLVDTGSDLVWAQCSPCHGCY---------KQKSPMFEPLSSKTFNPIPCDSEQC 145
P+ +DTGSDL W C+ C C K +++ S T P+ C+S C
Sbjct: 2 PLSFLVALDTGSDLFWLPCN-CTKCVHGIGLSNGEKIAFNIYDLKGSSTSQPVLCNSSLC 178
Query: 146 GSLFSHSCSPQKLCAYSYSY-ADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSN 204
L S +C Y +Y ++ + T G L + + + + + I FGCG
Sbjct: 179 -ELQRQCPSSDTICPYEVNYLSNGTSTTGFLVEDVLHLITDDDKTKDADTRITFGCGQVQ 355
Query: 205 SGAFNEN--DMGVIGLGGGPLSLVSQMGAL-YGSRRFSQCLVPFHADSRTSGTISFGDAS 261
+GAF + G+ GLG S+ S + S FS C F +D G I+FGD S
Sbjct: 356 TGAFLDGAAPNGLFGLGMSNESVPSILAKEGLTSNSFSMC---FGSDG--LGRITFGDNS 520
Query: 262 D-VSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSFNSSEKLSKGNMMIDSGTPATYL 320
V G+ TP Y +T+ I VG+ + + + DSGT TYL
Sbjct: 521 SLVQGK----TPFNLRALHPTYNITVTQIIVGEKVDDL-------EFHAIFDSGTSFTYL 667
Query: 321 PQEFYDRLV----EELKVQSSLLPVDNDPDLGTQLCYRSETNLEGPI-LTAHFEGADVQL 375
Y ++ E+K+Q N +L + CY N + + +G D L
Sbjct: 668 NDPAYKQITNSFNSEIKLQRHSTSSSN--ELPFEYCYELSPNQTVELSINLTMKGGDNYL 841
Query: 376 M--PIQTFIPPKDGVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDC 429
+ PI T + C + + + + I NF + I FD + + ++ ++C
Sbjct: 842 VTDPIVTVSGEGINLLCLGVLKSNNVNIIGQNF-MTGYRIVFDRENMILGWRESNC 1006
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,918,842
Number of Sequences: 63676
Number of extensions: 348141
Number of successful extensions: 2170
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 2103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2114
length of query: 432
length of database: 12,639,632
effective HSP length: 100
effective length of query: 332
effective length of database: 6,272,032
effective search space: 2082314624
effective search space used: 2082314624
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0588b.3